Wall clock time and date at job start Tue Mar 31 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47090 * 2 1 4 4 C 1.35632 * 125.67507 * 266.72413 * 3 2 1 5 5 C 1.35524 * 108.85269 * 180.29151 * 4 3 2 6 6 Cl 1.73599 * 126.07769 * 179.70990 * 5 4 3 7 7 C 1.39887 * 107.84867 * 359.73216 * 5 4 3 8 8 C 1.37635 * 125.67735 * 86.55275 * 3 2 1 9 9 C 1.46665 * 126.22563 * 359.97438 * 8 3 2 10 10 O 1.21702 * 119.99677 * 5.35710 * 9 8 3 11 11 N 1.34772 * 120.00472 * 185.35203 * 9 8 3 12 12 C 1.47816 * 135.01003 * 5.14920 * 11 9 8 13 13 C 1.54654 * 85.79133 * 153.83791 * 12 11 9 14 14 H 1.09003 * 115.01131 * 139.90917 * 13 12 11 15 15 C 1.53007 * 110.83837 * 270.22568 * 13 12 11 16 16 C 1.53110 * 109.44538 * 143.89674 * 15 13 12 17 17 N 1.46618 * 108.00531 * 301.01614 * 16 15 13 18 18 C 1.36937 * 119.89259 * 237.35232 * 17 16 15 19 19 H 1.07996 * 119.99723 * 28.37328 * 18 17 16 20 20 C 1.38807 * 119.99914 * 208.37933 * 18 17 16 21 21 N 1.31620 * 120.00369 * 16.37238 * 20 18 17 22 22 Si 1.86799 * 119.99795 * 196.38328 * 20 18 17 23 23 H 1.48498 * 109.47555 * 59.99633 * 22 20 18 24 24 H 1.48506 * 109.47265 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.47096 * 299.99161 * 22 20 18 26 26 C 1.45063 * 120.50221 * 56.72224 * 17 16 15 27 27 C 1.46823 * 135.01654 * 185.18571 * 11 9 8 28 28 H 1.09001 * 111.55480 * 94.45175 * 27 11 9 29 29 H 1.09000 * 109.46514 * 65.19633 * 1 2 3 30 30 H 1.08998 * 109.47075 * 185.18843 * 1 2 3 31 31 H 1.08995 * 109.47192 * 305.19302 * 1 2 3 32 32 H 1.08999 * 109.46952 * 239.99336 * 2 1 3 33 33 H 1.09000 * 109.46690 * 120.00009 * 2 1 3 34 34 H 1.08002 * 125.57555 * 0.05680 * 4 3 2 35 35 H 1.08002 * 126.45223 * 180.02562 * 7 5 4 36 36 H 1.09002 * 113.81963 * 39.61937 * 12 11 9 37 37 H 1.08997 * 113.81562 * 268.05742 * 12 11 9 38 38 H 1.09004 * 109.48007 * 263.88667 * 15 13 12 39 39 H 1.08999 * 109.47672 * 23.90160 * 15 13 12 40 40 H 1.09001 * 109.75370 * 60.64900 * 16 15 13 41 41 H 1.09000 * 109.75180 * 181.39322 * 16 15 13 42 42 H 0.96999 * 119.99958 * 180.02562 * 21 20 18 43 43 H 1.08996 * 108.75979 * 200.68175 * 26 17 16 44 44 H 1.09003 * 108.30385 * 82.86769 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3414 2.1059 -1.1000 5 6 2.7588 3.3343 -0.7081 6 17 3.2859 4.6164 -1.7530 7 6 2.6899 3.3852 0.6882 8 6 2.2225 2.1604 1.1160 9 6 1.9911 1.7590 2.5076 10 8 1.6735 0.6128 2.7654 11 7 2.1304 2.6593 3.5007 12 6 2.3996 4.1112 3.5654 13 6 1.6608 4.0722 4.9234 14 1 2.1030 4.6882 5.7065 15 6 0.1615 4.3123 4.7345 16 6 -0.6217 3.4541 5.7318 17 7 -0.2785 2.0496 5.4886 18 6 -1.2654 1.1467 5.1955 19 1 -2.1687 1.4751 4.7031 20 6 -1.1049 -0.1904 5.5315 21 7 -0.1812 -0.5446 6.3998 22 14 -2.1995 -1.4875 4.7512 23 1 -2.0212 -1.4640 3.2771 24 1 -1.8285 -2.8275 5.2729 25 1 -3.6187 -1.2022 5.0829 26 6 1.1027 1.6092 5.5424 27 6 2.0782 2.6044 4.9670 28 1 3.0715 2.4817 5.3988 29 1 -0.3632 0.4311 -0.9329 30 1 -0.3633 -1.0234 0.0929 31 1 -0.3633 0.5922 0.8398 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2799 1.7594 -2.1211 35 1 2.9529 4.2257 1.3134 36 1 1.8827 4.6893 2.7994 37 1 3.4578 4.3595 3.6468 38 1 -0.0626 5.3650 4.9066 39 1 -0.1247 4.0411 3.7184 40 1 -0.3472 3.7296 6.7500 41 1 -1.6915 3.6027 5.5849 42 1 -0.0688 -1.4791 6.6343 43 1 1.1935 0.6724 4.9926 44 1 1.3634 1.4266 6.5849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084835627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:54 Heat of formation + Delta-G solvation = 75.966100 kcal Electronic energy + Delta-G solvation = -28534.601830 eV Core-core repulsion = 24709.006825 eV Total energy + Delta-G solvation = -3825.595005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.49548 -40.20866 -37.38090 -36.42630 -35.26019 -34.00825 -32.13857 -30.30246 -30.14351 -29.17213 -28.07177 -26.96241 -23.98904 -23.56202 -23.25090 -21.95189 -20.90281 -20.57151 -19.24840 -18.01686 -17.37040 -16.40739 -15.82896 -15.62662 -15.28508 -15.11763 -14.52932 -14.28272 -14.13727 -13.77461 -13.46681 -13.36496 -13.21503 -12.99590 -12.91271 -12.66807 -12.55565 -12.25368 -11.99853 -11.87315 -11.52915 -11.38234 -11.18039 -11.07547 -10.88993 -10.67184 -10.64554 -10.47186 -10.20206 -9.94181 -9.84259 -9.65871 -8.97931 -8.67661 -8.32366 -8.30796 -8.05836 -6.54461 -5.67138 -3.11513 1.58059 2.09594 2.47373 2.78242 3.42463 3.44713 3.49992 3.52255 3.72388 4.58349 4.61840 4.70171 4.72306 4.84540 5.09262 5.18027 5.21271 5.34916 5.41482 5.46981 5.53454 5.57003 5.61732 5.71291 5.74245 5.81436 5.89748 5.94829 6.11536 6.14051 6.28007 6.29211 6.40501 6.47138 6.54591 6.61343 6.80356 6.84509 7.02088 7.08471 7.48694 7.73068 7.92188 8.21567 8.57917 8.67042 9.35572 9.99388 10.48725 11.40512 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.004675 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.779368 B = 5987.573219 C = 7512.406092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.398 5.398 4 C 0.023 3.977 5 C -0.123 4.123 6 Cl -0.059 7.059 7 C -0.143 4.143 8 C -0.013 4.013 9 C 0.604 3.396 10 O -0.520 6.520 11 N -0.618 5.618 12 C 0.092 3.908 13 C -0.109 4.109 14 H 0.089 0.911 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.581 5.581 18 C -0.255 4.255 19 H 0.059 0.941 20 C 0.016 3.984 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.167 3.833 27 C 0.129 3.871 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.252 0.748 43 H 0.096 0.904 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 9.266 -12.462 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.071 5.071 4 C -0.114 4.114 5 C -0.156 4.156 6 Cl -0.031 7.031 7 C -0.169 4.169 8 C -0.128 4.128 9 C 0.393 3.607 10 O -0.397 6.397 11 N -0.353 5.353 12 C -0.031 4.031 13 C -0.128 4.128 14 H 0.107 0.893 15 C -0.157 4.157 16 C 0.021 3.979 17 N -0.304 5.304 18 C -0.385 4.385 19 H 0.076 0.924 20 C -0.183 4.183 21 N -0.543 5.543 22 Si 0.728 3.272 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.041 3.959 27 C 0.026 3.974 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.190 0.810 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.439 8.008 -12.457 16.572 hybrid contribution -0.287 -0.528 -0.782 0.986 sum 7.153 7.480 -13.238 16.804 Atomic orbital electron populations 1.22073 0.93525 1.03730 1.02793 1.22179 0.96416 0.78635 1.05259 1.44078 1.46432 1.12008 1.04574 1.21609 1.06125 0.91484 0.92194 1.19855 1.13266 0.91146 0.91321 1.98303 1.89529 1.49247 1.65979 1.21348 1.05635 0.96932 0.92951 1.20301 1.11864 0.92024 0.88564 1.16337 0.78057 0.84292 0.82000 1.90870 1.47121 1.18280 1.83427 1.49463 1.70035 1.08756 1.07080 1.23722 0.99788 0.81754 0.97862 1.22855 0.97230 0.96666 0.96070 0.89287 1.21871 0.93085 0.99031 1.01748 1.20758 0.96978 0.85629 0.94525 1.43254 1.02006 1.03424 1.81683 1.18967 0.98658 0.88717 1.32112 0.92373 1.24950 0.98272 0.98155 0.96919 1.70014 1.35855 1.16163 1.32311 0.86448 0.79990 0.81262 0.79479 1.21079 1.21731 1.21132 1.19969 0.82249 0.95361 0.98358 1.22780 1.00029 0.96382 0.78256 0.90616 0.92593 0.90495 0.90854 0.89389 0.86790 0.80978 0.83032 0.90113 0.90153 0.92622 0.92066 0.96136 0.92559 0.93785 0.88553 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.10 1.28 6.24 -4.04 -0.03 1.25 16 3 N -0.40 -5.75 2.76 -112.83 -0.31 -6.06 16 4 C 0.02 0.28 11.36 -16.84 -0.19 0.09 16 5 C -0.12 -1.59 6.66 -39.93 -0.27 -1.86 16 6 Cl -0.06 -0.67 29.30 -51.86 -1.52 -2.19 16 7 C -0.14 -2.01 9.88 -39.09 -0.39 -2.40 16 8 C -0.01 -0.21 6.88 -81.98 -0.56 -0.77 16 9 C 0.60 11.85 7.95 -12.86 -0.10 11.75 16 10 O -0.52 -12.19 13.68 5.19 0.07 -12.12 16 11 N -0.62 -10.97 3.33 -175.51 -0.58 -11.55 16 12 C 0.09 1.20 6.14 -2.99 -0.02 1.18 16 13 C -0.11 -1.61 4.39 -89.97 -0.40 -2.01 16 14 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 15 C -0.12 -1.93 5.66 -26.67 -0.15 -2.08 16 16 C 0.15 3.01 6.48 -3.92 -0.03 2.99 16 17 N -0.58 -14.60 2.99 -175.56 -0.53 -15.12 16 18 C -0.26 -7.19 9.46 -15.06 -0.14 -7.33 16 19 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 20 C 0.02 0.47 4.86 -17.43 -0.08 0.39 16 21 N -0.90 -26.85 11.29 55.49 0.63 -26.22 16 22 Si 0.90 22.79 29.58 -169.99 -5.03 17.76 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 26 C 0.17 4.05 4.55 -5.93 -0.03 4.02 16 27 C 0.13 2.39 4.28 -69.59 -0.30 2.09 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.11 1.82 6.41 -51.93 -0.33 1.49 16 34 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.15 1.88 5.54 -52.49 -0.29 1.59 16 36 H 0.08 0.98 6.76 -51.93 -0.35 0.63 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.10 2.74 5.04 -51.93 -0.26 2.47 16 44 H 0.03 0.85 7.88 -51.93 -0.41 0.44 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -32.93 364.01 -10.31 -43.24 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.23 Total: 1.40 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.30 Total: 5.38 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.80 Total: -58.96 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.52 Total: -2.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.93 -10.31 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084835627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.208 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds