Wall clock time and date at job start Tue Mar 31 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47090 * 2 1 4 4 C 1.35632 * 125.67507 * 266.72413 * 3 2 1 5 5 C 1.35524 * 108.85269 * 180.29151 * 4 3 2 6 6 Cl 1.73599 * 126.07769 * 179.70990 * 5 4 3 7 7 C 1.39887 * 107.84867 * 359.73216 * 5 4 3 8 8 C 1.37635 * 125.67735 * 86.55275 * 3 2 1 9 9 C 1.46665 * 126.22563 * 359.97438 * 8 3 2 10 10 O 1.21702 * 119.99677 * 5.35710 * 9 8 3 11 11 N 1.34772 * 120.00472 * 185.35203 * 9 8 3 12 12 C 1.47816 * 135.01003 * 5.14920 * 11 9 8 13 13 C 1.54654 * 85.79133 * 153.83791 * 12 11 9 14 14 H 1.09003 * 115.01131 * 139.90917 * 13 12 11 15 15 C 1.53007 * 110.83837 * 270.22568 * 13 12 11 16 16 C 1.53110 * 109.44538 * 143.89674 * 15 13 12 17 17 N 1.46618 * 108.00531 * 301.01614 * 16 15 13 18 18 C 1.36937 * 119.89259 * 237.35232 * 17 16 15 19 19 H 1.07996 * 119.99723 * 28.37328 * 18 17 16 20 20 C 1.38807 * 119.99914 * 208.37933 * 18 17 16 21 21 N 1.31620 * 120.00369 * 16.37238 * 20 18 17 22 22 Si 1.86799 * 119.99795 * 196.38328 * 20 18 17 23 23 H 1.48498 * 109.47555 * 59.99633 * 22 20 18 24 24 H 1.48506 * 109.47265 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.47096 * 299.99161 * 22 20 18 26 26 C 1.45063 * 120.50221 * 56.72224 * 17 16 15 27 27 C 1.46823 * 135.01654 * 185.18571 * 11 9 8 28 28 H 1.09001 * 111.55480 * 94.45175 * 27 11 9 29 29 H 1.09000 * 109.46514 * 65.19633 * 1 2 3 30 30 H 1.08998 * 109.47075 * 185.18843 * 1 2 3 31 31 H 1.08995 * 109.47192 * 305.19302 * 1 2 3 32 32 H 1.08999 * 109.46952 * 239.99336 * 2 1 3 33 33 H 1.09000 * 109.46690 * 120.00009 * 2 1 3 34 34 H 1.08002 * 125.57555 * 0.05680 * 4 3 2 35 35 H 1.08002 * 126.45223 * 180.02562 * 7 5 4 36 36 H 1.09002 * 113.81963 * 39.61937 * 12 11 9 37 37 H 1.08997 * 113.81562 * 268.05742 * 12 11 9 38 38 H 1.09004 * 109.48007 * 263.88667 * 15 13 12 39 39 H 1.08999 * 109.47672 * 23.90160 * 15 13 12 40 40 H 1.09001 * 109.75370 * 60.64900 * 16 15 13 41 41 H 1.09000 * 109.75180 * 181.39322 * 16 15 13 42 42 H 0.96999 * 119.99958 * 180.02562 * 21 20 18 43 43 H 1.08996 * 108.75979 * 200.68175 * 26 17 16 44 44 H 1.09003 * 108.30385 * 82.86769 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3414 2.1059 -1.1000 5 6 2.7588 3.3343 -0.7081 6 17 3.2859 4.6164 -1.7530 7 6 2.6899 3.3852 0.6882 8 6 2.2225 2.1604 1.1160 9 6 1.9911 1.7590 2.5076 10 8 1.6735 0.6128 2.7654 11 7 2.1304 2.6593 3.5007 12 6 2.3996 4.1112 3.5654 13 6 1.6608 4.0722 4.9234 14 1 2.1030 4.6882 5.7065 15 6 0.1615 4.3123 4.7345 16 6 -0.6217 3.4541 5.7318 17 7 -0.2785 2.0496 5.4886 18 6 -1.2654 1.1467 5.1955 19 1 -2.1687 1.4751 4.7031 20 6 -1.1049 -0.1904 5.5315 21 7 -0.1812 -0.5446 6.3998 22 14 -2.1995 -1.4875 4.7512 23 1 -2.0212 -1.4640 3.2771 24 1 -1.8285 -2.8275 5.2729 25 1 -3.6187 -1.2022 5.0829 26 6 1.1027 1.6092 5.5424 27 6 2.0782 2.6044 4.9670 28 1 3.0715 2.4817 5.3988 29 1 -0.3632 0.4311 -0.9329 30 1 -0.3633 -1.0234 0.0929 31 1 -0.3633 0.5922 0.8398 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2799 1.7594 -2.1211 35 1 2.9529 4.2257 1.3134 36 1 1.8827 4.6893 2.7994 37 1 3.4578 4.3595 3.6468 38 1 -0.0626 5.3650 4.9066 39 1 -0.1247 4.0411 3.7184 40 1 -0.3472 3.7296 6.7500 41 1 -1.6915 3.6027 5.5849 42 1 -0.0688 -1.4791 6.6343 43 1 1.1935 0.6724 4.9926 44 1 1.3634 1.4266 6.5849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084835627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:51 Heat of formation + Delta-G solvation = 55.791054 kcal Electronic energy + Delta-G solvation = -28535.476686 eV Core-core repulsion = 24709.006825 eV Total energy + Delta-G solvation = -3826.469861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.61180 -41.53615 -38.85769 -37.36570 -37.05815 -35.10714 -33.96177 -32.01486 -31.56506 -30.26205 -29.43802 -28.55605 -25.76540 -24.86153 -24.58813 -23.27238 -22.45670 -21.64133 -20.49442 -19.58131 -18.81479 -17.91144 -17.34845 -17.13209 -16.64825 -16.33568 -16.06699 -15.69589 -15.52433 -15.25658 -14.99033 -14.79127 -14.52698 -14.36792 -14.25608 -13.91812 -13.76518 -13.67003 -13.45799 -13.17655 -13.11366 -12.75495 -12.67475 -12.41321 -12.36379 -12.26650 -12.21780 -11.99163 -11.82493 -11.73113 -11.50239 -11.17879 -10.66305 -10.36969 -9.74577 -9.60888 -9.18233 -8.62448 -7.85411 -5.32120 0.42657 1.11780 1.33990 1.40177 1.44287 1.46910 1.64587 2.25226 2.39160 2.47611 3.28097 3.44127 3.46651 3.71844 3.74944 3.94154 3.97587 4.00252 4.14206 4.22417 4.27969 4.44440 4.47255 4.52561 4.56282 4.63672 4.69723 4.72885 4.77443 4.83757 4.93025 4.93900 5.07360 5.07747 5.13417 5.31827 5.39829 5.50615 5.56704 5.70732 5.75123 5.80102 6.07752 6.40155 6.87473 7.20344 7.27050 7.97116 8.36579 9.17909 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.004675 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.779368 B = 5987.573219 C = 7512.406092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.406 5.406 4 C 0.043 3.957 5 C -0.136 4.136 6 Cl -0.041 7.041 7 C -0.125 4.125 8 C -0.053 4.053 9 C 0.591 3.409 10 O -0.580 6.580 11 N -0.626 5.626 12 C 0.106 3.894 13 C -0.098 4.098 14 H 0.131 0.869 15 C -0.106 4.106 16 C 0.139 3.861 17 N -0.599 5.599 18 C -0.260 4.260 19 H 0.052 0.948 20 C -0.036 4.036 21 N -0.928 5.928 22 Si 0.951 3.049 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.269 1.269 26 C 0.183 3.817 27 C 0.116 3.884 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.210 0.790 35 H 0.170 0.830 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.049 0.951 42 H 0.245 0.755 43 H 0.046 0.954 44 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 12.417 -15.022 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.079 5.079 4 C -0.094 4.094 5 C -0.169 4.169 6 Cl -0.012 7.012 7 C -0.151 4.151 8 C -0.167 4.167 9 C 0.383 3.617 10 O -0.461 6.461 11 N -0.360 5.360 12 C -0.015 4.015 13 C -0.116 4.116 14 H 0.148 0.852 15 C -0.145 4.145 16 C 0.014 3.986 17 N -0.322 5.322 18 C -0.391 4.391 19 H 0.070 0.930 20 C -0.232 4.232 21 N -0.574 5.574 22 Si 0.780 3.220 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.195 1.195 26 C 0.057 3.943 27 C 0.012 3.988 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.187 0.813 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 8.541 11.248 -15.010 20.610 hybrid contribution -0.640 -1.426 -0.024 1.563 sum 7.902 9.822 -15.034 19.620 Atomic orbital electron populations 1.21991 0.94319 1.03142 1.01868 1.22155 0.95686 0.78726 1.05691 1.44203 1.46632 1.12239 1.04793 1.22265 1.03331 0.90872 0.92940 1.19941 1.13727 0.92021 0.91180 1.98313 1.89346 1.48370 1.65195 1.21563 1.03589 0.96124 0.93863 1.20006 1.15365 0.93705 0.87584 1.16930 0.77265 0.83841 0.83693 1.90838 1.49958 1.20784 1.84548 1.49629 1.69384 1.10801 1.06202 1.23958 1.02064 0.78654 0.96827 1.22875 0.96482 0.93747 0.98536 0.85158 1.21737 0.93577 1.00401 0.98786 1.20987 0.97566 0.83744 0.96302 1.43492 1.01841 1.04965 1.81869 1.19224 0.99096 0.89744 1.31021 0.92983 1.25611 0.99911 0.99936 0.97756 1.70167 1.37612 1.15701 1.33906 0.85592 0.79275 0.79008 0.78140 1.21633 1.21819 1.19493 1.19552 0.83341 0.95527 0.95898 1.22729 0.99313 0.97566 0.79224 0.88709 0.89882 0.90235 0.95850 0.84895 0.90309 0.77285 0.81317 0.88479 0.86186 0.88168 0.94325 0.95283 0.93254 0.94604 0.93604 0.98654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 10.24 71.98 0.74 -3.73 16 2 C 0.10 2.62 6.24 86.38 0.54 3.16 16 3 N -0.41 -11.29 2.76 -510.88 -1.41 -12.70 16 4 C 0.04 0.91 11.36 83.48 0.95 1.86 16 5 C -0.14 -3.07 6.66 22.04 0.15 -2.92 16 6 Cl -0.04 -0.77 29.30 -2.72 -0.08 -0.85 16 7 C -0.13 -3.20 9.88 22.59 0.22 -2.98 16 8 C -0.05 -1.72 6.88 40.35 0.28 -1.44 16 9 C 0.59 24.07 7.95 86.44 0.69 24.76 16 10 O -0.58 -29.51 13.68 -4.35 -0.06 -29.57 16 11 N -0.63 -22.02 3.33 -827.41 -2.76 -24.78 16 12 C 0.11 2.37 6.14 86.34 0.53 2.90 16 13 C -0.10 -2.57 4.39 -10.32 -0.05 -2.62 16 14 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -3.22 5.66 30.63 0.17 -3.04 16 16 C 0.14 5.66 6.48 86.39 0.56 6.22 16 17 N -0.60 -31.36 2.99 -709.34 -2.12 -33.49 16 18 C -0.26 -15.44 9.46 84.03 0.79 -14.65 16 19 H 0.05 3.07 7.88 -2.91 -0.02 3.05 16 20 C -0.04 -2.19 4.86 84.86 0.41 -1.77 16 21 N -0.93 -59.02 11.29 21.65 0.24 -58.78 16 22 Si 0.95 49.27 29.58 68.60 2.03 51.30 16 23 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 25 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 26 C 0.18 9.41 4.55 85.92 0.39 9.80 16 27 C 0.12 4.27 4.28 43.74 0.19 4.46 16 28 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.08 2.71 6.41 -2.39 -0.02 2.70 16 34 H 0.21 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.17 3.53 5.54 -2.91 -0.02 3.51 16 36 H 0.10 1.91 6.76 -2.39 -0.02 1.90 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 2.03 7.90 -2.39 -0.02 2.01 16 42 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.05 2.82 5.04 -2.39 -0.01 2.80 16 44 H 0.00 -0.24 7.88 -2.39 -0.02 -0.26 16 Total: -1.00 -81.31 364.01 3.42 -77.90 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.01 Total: 10.96 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.56 Total: 20.00 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -6.05 Total: -129.75 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -81.31 3.42 -77.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084835627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.687 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds