Wall clock time and date at job start Tue Mar 31 2020 21:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47288 * 2 1 4 4 C 1.35628 * 125.67441 * 261.43520 * 3 2 1 5 5 C 1.35525 * 108.84873 * 180.26498 * 4 3 2 6 6 Cl 1.73590 * 126.07359 * 179.74764 * 5 4 3 7 7 C 1.39882 * 107.84712 * 359.77341 * 5 4 3 8 8 C 1.37629 * 125.67391 * 81.31055 * 3 2 1 9 9 C 1.46674 * 126.22463 * 359.97438 * 8 3 2 10 10 O 1.21697 * 120.00022 * 5.17395 * 9 8 3 11 11 N 1.34777 * 119.99794 * 185.16795 * 9 8 3 12 12 C 1.46502 * 119.99438 * 185.08509 * 11 9 8 13 13 H 1.08992 * 110.55992 * 39.26474 * 12 11 9 14 14 C 1.54226 * 110.63834 * 162.18340 * 12 11 9 15 15 C 1.55842 * 103.56531 * 118.56568 * 14 12 11 16 16 H 1.09004 * 116.12818 * 159.05743 * 15 14 12 17 17 C 1.55844 * 105.06379 * 288.08337 * 15 14 12 18 18 C 1.54858 * 103.44382 * 71.82594 * 17 15 14 19 19 C 1.55847 * 110.62761 * 276.35865 * 12 11 9 20 20 H 1.08997 * 116.12284 * 82.36857 * 19 12 11 21 21 N 1.50235 * 101.05012 * 208.57813 * 19 12 11 22 22 C 1.36940 * 130.83444 * 234.00561 * 21 19 12 23 23 H 1.07996 * 120.00416 * 342.77167 * 22 21 19 24 24 C 1.38816 * 119.99642 * 162.77797 * 22 21 19 25 25 N 1.31618 * 120.00146 * 334.40595 * 24 22 21 26 26 Si 1.86805 * 119.99572 * 154.41394 * 24 22 21 27 27 H 1.48504 * 109.46846 * 179.97438 * 26 24 22 28 28 H 1.48495 * 109.47189 * 60.00024 * 26 24 22 29 29 H 1.48499 * 109.46976 * 299.99385 * 26 24 22 30 30 H 1.09004 * 109.47176 * 59.99813 * 1 2 3 31 31 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47093 * 300.00330 * 1 2 3 33 33 H 1.09008 * 109.47109 * 240.00042 * 2 1 3 34 34 H 1.09004 * 109.47176 * 120.00187 * 2 1 3 35 35 H 1.07995 * 125.57448 * 0.04220 * 4 3 2 36 36 H 1.08007 * 126.44898 * 180.02562 * 7 5 4 37 37 H 0.96998 * 120.00612 * 5.08847 * 11 9 8 38 38 H 1.08999 * 110.64636 * 359.97438 * 14 12 11 39 39 H 1.09007 * 110.49186 * 237.05331 * 14 12 11 40 40 H 1.09000 * 110.63001 * 190.30917 * 17 15 14 41 41 H 1.08994 * 110.62815 * 313.18073 * 17 15 14 42 42 H 1.08999 * 110.62875 * 118.49162 * 18 17 15 43 43 H 1.08998 * 110.62407 * 241.51378 * 18 17 15 44 44 H 0.96999 * 119.99787 * 359.42918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4367 2.0723 -1.0895 5 6 2.8196 3.3128 -0.7007 6 17 3.4362 4.5633 -1.7349 7 6 2.6303 3.4062 0.6821 8 6 2.1267 2.1943 1.1052 9 6 1.7757 1.8350 2.4833 10 8 1.4323 0.6977 2.7469 11 7 1.8337 2.7645 3.4575 12 6 1.5917 2.3812 4.8507 13 1 2.0440 1.4131 5.0654 14 6 2.1320 3.4589 5.8126 15 6 0.8599 3.9413 6.5727 16 1 1.0306 4.4339 7.5300 17 6 0.0515 4.7664 5.5266 18 6 -0.4944 3.6865 4.5602 19 6 0.0635 2.3529 5.1548 20 1 -0.4671 1.4465 4.8632 21 7 0.0560 2.6731 6.6226 22 6 -0.5056 2.0098 7.6809 23 1 -1.2712 1.2680 7.5086 24 6 -0.0906 2.2911 8.9754 25 7 1.1160 2.7709 9.1901 26 14 -1.2449 1.9885 10.4127 27 1 -0.5679 2.3663 11.6793 28 1 -1.6122 0.5504 10.4582 29 1 -2.4718 2.8078 10.2432 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 2.4640 1.6944 -2.1008 36 1 2.8388 4.2660 1.3017 37 1 2.0355 3.6871 3.2364 38 1 2.5816 4.2808 5.2555 39 1 2.8522 3.0248 6.5062 40 1 -0.7679 5.2998 6.0084 41 1 0.7039 5.4624 4.9994 42 1 -1.5844 3.6844 4.5628 43 1 -0.1120 3.8450 3.5519 44 1 1.7183 2.9202 8.4446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096556669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:36 Heat of formation + Delta-G solvation = 52.232911 kcal Electronic energy + Delta-G solvation = -27607.675441 eV Core-core repulsion = 23781.051288 eV Total energy + Delta-G solvation = -3826.624153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 6.25 seconds Orbital eigenvalues (eV) -41.72175 -39.96342 -38.18697 -36.61258 -34.65430 -33.78716 -32.53762 -30.15693 -29.43267 -29.12101 -29.04826 -27.38842 -24.18534 -23.82879 -22.77689 -21.51527 -20.84829 -19.94207 -19.48364 -18.75022 -18.03050 -17.48274 -16.17062 -15.71027 -15.54247 -15.04573 -14.81297 -14.59262 -14.33822 -14.03644 -13.83306 -13.68890 -13.32833 -13.05180 -12.91136 -12.86907 -12.39433 -12.27022 -11.96592 -11.76351 -11.59962 -11.43666 -11.32060 -11.08098 -11.04219 -10.76937 -10.57287 -10.25135 -10.10638 -9.97795 -9.79963 -9.59327 -9.42142 -8.92227 -8.76744 -8.51768 -8.37358 -6.99999 -6.18417 -3.14542 1.28139 1.90469 2.24375 2.62482 3.35903 3.44099 3.48953 3.53107 3.70156 4.44387 4.51360 4.61851 4.71928 4.80030 4.96331 5.00595 5.06533 5.28481 5.29394 5.35502 5.45047 5.56932 5.58536 5.69677 5.73494 5.76976 5.87963 5.92857 5.94790 6.07557 6.12157 6.21922 6.34184 6.44512 6.52429 6.57169 6.65201 6.71882 6.79665 6.83081 7.01442 7.12680 7.56257 7.68485 8.32022 8.39599 8.92675 9.75445 10.43969 11.23036 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002905 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.020148 B = 9637.837606 C =10461.883437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.399 5.399 4 C 0.027 3.973 5 C -0.122 4.122 6 Cl -0.054 7.054 7 C -0.135 4.135 8 C -0.025 4.025 9 C 0.582 3.418 10 O -0.542 6.542 11 N -0.698 5.698 12 C 0.132 3.868 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.142 3.858 16 H 0.108 0.892 17 C -0.133 4.133 18 C -0.128 4.128 19 C 0.132 3.868 20 H 0.089 0.911 21 N -0.592 5.592 22 C -0.322 4.322 23 H 0.067 0.933 24 C -0.028 4.028 25 N -0.922 5.922 26 Si 1.072 2.928 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.397 0.603 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 1.128 -21.726 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.072 5.072 4 C -0.110 4.110 5 C -0.155 4.155 6 Cl -0.025 7.025 7 C -0.161 4.161 8 C -0.140 4.140 9 C 0.369 3.631 10 O -0.421 6.421 11 N -0.349 5.349 12 C 0.027 3.973 13 H 0.101 0.899 14 C -0.177 4.177 15 C 0.035 3.965 16 H 0.126 0.874 17 C -0.172 4.172 18 C -0.168 4.168 19 C 0.023 3.977 20 H 0.107 0.893 21 N -0.314 5.314 22 C -0.450 4.450 23 H 0.085 0.915 24 C -0.229 4.229 25 N -0.563 5.563 26 Si 0.901 3.099 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.192 0.808 36 H 0.169 0.831 37 H 0.232 0.768 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.835 -0.001 -19.692 19.895 hybrid contribution 0.384 0.447 -2.117 2.197 sum 3.220 0.446 -21.809 22.050 Atomic orbital electron populations 1.22081 0.93611 1.03361 1.03119 1.22130 0.96340 0.78654 1.05143 1.44048 1.45805 1.11849 1.05481 1.21669 1.04926 0.91855 0.92511 1.19867 1.12228 0.91518 0.91859 1.98321 1.86368 1.51404 1.66444 1.21198 1.04444 0.96992 0.93457 1.20222 1.12884 0.91797 0.89051 1.16872 0.77990 0.85346 0.82931 1.90809 1.48097 1.20078 1.83138 1.45969 1.70542 1.10968 1.07377 1.22537 0.98953 0.98533 0.77286 0.89884 1.23121 0.99560 0.97137 0.97875 1.22991 0.89276 0.88211 0.96055 0.87446 1.22951 0.99684 0.96826 0.97763 1.22978 0.99733 0.96872 0.97217 1.23312 0.92526 0.95543 0.86334 0.89344 1.46576 1.62231 1.21686 1.00952 1.19733 1.17075 1.22511 0.85658 0.91533 1.25795 0.98321 1.00635 0.98198 1.70812 1.04170 1.46820 1.34520 0.83395 0.74798 0.75825 0.75833 1.21053 1.22042 1.22133 0.92400 0.90476 0.91031 0.89162 0.87229 0.80765 0.83058 0.76791 0.92071 0.91032 0.92497 0.93026 0.92802 0.92749 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.17 37.16 0.38 -1.15 16 2 C 0.10 0.91 6.11 -4.04 -0.02 0.89 16 3 N -0.40 -4.34 2.76 -112.82 -0.31 -4.66 16 4 C 0.03 0.26 11.34 -16.84 -0.19 0.07 16 5 C -0.12 -1.28 6.66 -39.94 -0.27 -1.55 16 6 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 7 C -0.13 -1.51 10.34 -39.09 -0.40 -1.91 16 8 C -0.03 -0.32 6.88 -81.98 -0.56 -0.88 16 9 C 0.58 8.79 7.75 -12.86 -0.10 8.69 16 10 O -0.54 -9.72 14.09 5.19 0.07 -9.64 16 11 N -0.70 -10.10 3.59 -53.02 -0.19 -10.29 16 12 C 0.13 2.42 2.98 -65.77 -0.20 2.22 16 13 H 0.08 1.73 7.84 -51.93 -0.41 1.32 16 14 C -0.14 -2.49 6.04 -24.57 -0.15 -2.64 16 15 C 0.14 3.03 3.80 -62.80 -0.24 2.79 16 16 H 0.11 2.58 6.67 -51.93 -0.35 2.23 16 17 C -0.13 -2.38 6.44 -24.23 -0.16 -2.54 16 18 C -0.13 -2.29 6.35 -23.98 -0.15 -2.44 16 19 C 0.13 2.72 5.35 -62.55 -0.33 2.39 16 20 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 21 N -0.59 -14.55 2.83 -145.55 -0.41 -14.96 16 22 C -0.32 -9.00 10.39 -15.06 -0.16 -9.16 16 23 H 0.07 1.88 7.95 -52.49 -0.42 1.46 16 24 C -0.03 -0.80 5.30 -17.43 -0.09 -0.89 16 25 N -0.92 -27.13 12.82 55.49 0.71 -26.42 16 26 Si 1.07 25.28 29.99 -169.99 -5.10 20.18 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.88 7.61 -51.93 -0.40 0.49 16 33 H 0.09 0.56 8.11 -51.92 -0.42 0.14 16 34 H 0.11 1.24 6.72 -51.93 -0.35 0.89 16 35 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.15 1.43 7.49 -52.48 -0.39 1.04 16 37 H 0.40 4.76 7.01 -40.82 -0.29 4.47 16 38 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 39 H 0.07 1.42 7.72 -51.93 -0.40 1.02 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 44 H 0.27 7.75 5.66 -40.82 -0.23 7.52 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -31.78 365.84 -9.99 -41.77 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.11 Total: 6.66 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.65 Total: -6.11 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.20 Total: -56.32 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.18 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.78 -9.99 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096556669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.999 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.25 seconds