Wall clock time and date at job start Tue Mar 31 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47288 * 2 1 4 4 C 1.35628 * 125.67441 * 261.43520 * 3 2 1 5 5 C 1.35525 * 108.84873 * 180.26498 * 4 3 2 6 6 Cl 1.73590 * 126.07359 * 179.74764 * 5 4 3 7 7 C 1.39882 * 107.84712 * 359.77341 * 5 4 3 8 8 C 1.37629 * 125.67391 * 81.31055 * 3 2 1 9 9 C 1.46674 * 126.22463 * 359.97438 * 8 3 2 10 10 O 1.21697 * 120.00022 * 5.17395 * 9 8 3 11 11 N 1.34777 * 119.99794 * 185.16795 * 9 8 3 12 12 C 1.46502 * 119.99438 * 185.08509 * 11 9 8 13 13 H 1.08992 * 110.55992 * 39.26474 * 12 11 9 14 14 C 1.54226 * 110.63834 * 162.18340 * 12 11 9 15 15 C 1.55842 * 103.56531 * 118.56568 * 14 12 11 16 16 H 1.09004 * 116.12818 * 159.05743 * 15 14 12 17 17 C 1.55844 * 105.06379 * 288.08337 * 15 14 12 18 18 C 1.54858 * 103.44382 * 71.82594 * 17 15 14 19 19 C 1.55847 * 110.62761 * 276.35865 * 12 11 9 20 20 H 1.08997 * 116.12284 * 82.36857 * 19 12 11 21 21 N 1.50235 * 101.05012 * 208.57813 * 19 12 11 22 22 C 1.36940 * 130.83444 * 234.00561 * 21 19 12 23 23 H 1.07996 * 120.00416 * 342.77167 * 22 21 19 24 24 C 1.38816 * 119.99642 * 162.77797 * 22 21 19 25 25 N 1.31618 * 120.00146 * 334.40595 * 24 22 21 26 26 Si 1.86805 * 119.99572 * 154.41394 * 24 22 21 27 27 H 1.48504 * 109.46846 * 179.97438 * 26 24 22 28 28 H 1.48495 * 109.47189 * 60.00024 * 26 24 22 29 29 H 1.48499 * 109.46976 * 299.99385 * 26 24 22 30 30 H 1.09004 * 109.47176 * 59.99813 * 1 2 3 31 31 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47093 * 300.00330 * 1 2 3 33 33 H 1.09008 * 109.47109 * 240.00042 * 2 1 3 34 34 H 1.09004 * 109.47176 * 120.00187 * 2 1 3 35 35 H 1.07995 * 125.57448 * 0.04220 * 4 3 2 36 36 H 1.08007 * 126.44898 * 180.02562 * 7 5 4 37 37 H 0.96998 * 120.00612 * 5.08847 * 11 9 8 38 38 H 1.08999 * 110.64636 * 359.97438 * 14 12 11 39 39 H 1.09007 * 110.49186 * 237.05331 * 14 12 11 40 40 H 1.09000 * 110.63001 * 190.30917 * 17 15 14 41 41 H 1.08994 * 110.62815 * 313.18073 * 17 15 14 42 42 H 1.08999 * 110.62875 * 118.49162 * 18 17 15 43 43 H 1.08998 * 110.62407 * 241.51378 * 18 17 15 44 44 H 0.96999 * 119.99787 * 359.42918 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4367 2.0723 -1.0895 5 6 2.8196 3.3128 -0.7007 6 17 3.4362 4.5633 -1.7349 7 6 2.6303 3.4062 0.6821 8 6 2.1267 2.1943 1.1052 9 6 1.7757 1.8350 2.4833 10 8 1.4323 0.6977 2.7469 11 7 1.8337 2.7645 3.4575 12 6 1.5917 2.3812 4.8507 13 1 2.0440 1.4131 5.0654 14 6 2.1320 3.4589 5.8126 15 6 0.8599 3.9413 6.5727 16 1 1.0306 4.4339 7.5300 17 6 0.0515 4.7664 5.5266 18 6 -0.4944 3.6865 4.5602 19 6 0.0635 2.3529 5.1548 20 1 -0.4671 1.4465 4.8632 21 7 0.0560 2.6731 6.6226 22 6 -0.5056 2.0098 7.6809 23 1 -1.2712 1.2680 7.5086 24 6 -0.0906 2.2911 8.9754 25 7 1.1160 2.7709 9.1901 26 14 -1.2449 1.9885 10.4127 27 1 -0.5679 2.3663 11.6793 28 1 -1.6122 0.5504 10.4582 29 1 -2.4718 2.8078 10.2432 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 2.4640 1.6944 -2.1008 36 1 2.8388 4.2660 1.3017 37 1 2.0355 3.6871 3.2364 38 1 2.5816 4.2808 5.2555 39 1 2.8522 3.0248 6.5062 40 1 -0.7679 5.2998 6.0084 41 1 0.7039 5.4624 4.9994 42 1 -1.5844 3.6844 4.5628 43 1 -0.1120 3.8450 3.5519 44 1 1.7183 2.9202 8.4446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096556669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:35 Heat of formation + Delta-G solvation = 34.435127 kcal Electronic energy + Delta-G solvation = -27608.447211 eV Core-core repulsion = 23781.051288 eV Total energy + Delta-G solvation = -3827.395923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59966 -41.43185 -39.52824 -37.35996 -35.85141 -34.98831 -34.28931 -31.36430 -30.88970 -30.49875 -30.18052 -28.86498 -26.02327 -24.71045 -23.91842 -22.90829 -21.84751 -21.47443 -20.71989 -20.22008 -19.54885 -18.85633 -17.36504 -16.91812 -16.73307 -16.41043 -16.08779 -15.74884 -15.58249 -15.28007 -15.16341 -15.01993 -14.73623 -14.14426 -14.05235 -13.73493 -13.62904 -13.54351 -13.43297 -13.02242 -12.92360 -12.62365 -12.54933 -12.40091 -12.36391 -12.20318 -11.93880 -11.85678 -11.79857 -11.65054 -11.43036 -11.05875 -11.02522 -10.58371 -10.13800 -9.73063 -9.25324 -8.96270 -8.38645 -5.28735 0.35250 1.14132 1.45150 1.56023 1.63769 1.71171 1.82905 2.26400 2.36251 2.62967 3.18871 3.35022 3.63437 3.75585 3.82510 3.91957 3.96566 3.99469 4.07320 4.20699 4.25167 4.30451 4.35768 4.44595 4.47375 4.54977 4.63087 4.71574 4.82899 4.83363 4.89651 4.94692 4.98574 5.05271 5.15365 5.22982 5.28749 5.40601 5.45241 5.57215 5.63861 5.74391 6.06519 6.28662 6.52732 6.83230 7.17372 7.65647 8.42480 9.05671 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002905 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.020148 B = 9637.837606 C =10461.883437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.403 5.403 4 C 0.049 3.951 5 C -0.140 4.140 6 Cl -0.046 7.046 7 C -0.122 4.122 8 C -0.058 4.058 9 C 0.582 3.418 10 O -0.579 6.579 11 N -0.686 5.686 12 C 0.154 3.846 13 H 0.049 0.951 14 C -0.123 4.123 15 C 0.131 3.869 16 H 0.076 0.924 17 C -0.120 4.120 18 C -0.113 4.113 19 C 0.121 3.879 20 H 0.062 0.938 21 N -0.623 5.623 22 C -0.333 4.333 23 H 0.051 0.949 24 C -0.078 4.078 25 N -0.949 5.949 26 Si 1.119 2.881 27 H -0.288 1.288 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.210 0.790 36 H 0.168 0.832 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 2.529 -24.888 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.075 5.075 4 C -0.089 4.089 5 C -0.172 4.172 6 Cl -0.017 7.017 7 C -0.149 4.149 8 C -0.171 4.171 9 C 0.371 3.629 10 O -0.460 6.460 11 N -0.338 5.338 12 C 0.047 3.953 13 H 0.067 0.933 14 C -0.162 4.162 15 C 0.025 3.975 16 H 0.094 0.906 17 C -0.159 4.159 18 C -0.152 4.152 19 C 0.014 3.986 20 H 0.080 0.920 21 N -0.347 5.347 22 C -0.461 4.461 23 H 0.069 0.931 24 C -0.274 4.274 25 N -0.592 5.592 26 Si 0.944 3.056 27 H -0.214 1.214 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.227 0.773 36 H 0.186 0.814 37 H 0.253 0.747 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.249 1.433 -22.908 23.182 hybrid contribution 0.284 -0.033 -1.302 1.333 sum 3.533 1.400 -24.211 24.507 Atomic orbital electron populations 1.22021 0.93770 1.03853 1.01902 1.22217 0.96169 0.78221 1.05776 1.44222 1.45696 1.12218 1.05408 1.22267 1.02113 0.91214 0.93304 1.19987 1.13112 0.92320 0.91827 1.98328 1.86292 1.51090 1.66027 1.21454 1.02636 0.96649 0.94146 1.19837 1.15885 0.93179 0.88199 1.17241 0.76935 0.84679 0.84024 1.90799 1.49651 1.21667 1.83889 1.45626 1.70707 1.11909 1.05597 1.21912 0.96662 0.97218 0.79528 0.93311 1.22980 0.97770 0.98134 0.97350 1.23065 0.90748 0.87588 0.96117 0.90590 1.22886 0.99546 0.96784 0.96664 1.22860 0.99253 0.94632 0.98492 1.23393 0.94236 0.96215 0.84786 0.92000 1.46802 1.63023 1.23230 1.01663 1.19903 1.16644 1.22342 0.87259 0.93143 1.27059 0.98947 1.00694 1.00654 1.70891 1.05012 1.48971 1.34325 0.82770 0.73407 0.76546 0.72892 1.21430 1.20674 1.20783 0.90906 0.89254 0.94700 0.85283 0.89814 0.77328 0.81431 0.74750 0.87470 0.93310 0.93418 0.88535 0.93594 0.89637 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.17 71.98 0.73 -2.04 16 2 C 0.10 1.63 6.11 86.38 0.53 2.16 16 3 N -0.40 -7.83 2.76 -510.85 -1.41 -9.24 16 4 C 0.05 0.74 11.34 83.48 0.95 1.69 16 5 C -0.14 -2.47 6.66 22.04 0.15 -2.32 16 6 Cl -0.05 -0.74 29.30 -2.72 -0.08 -0.82 16 7 C -0.12 -2.37 10.34 22.59 0.23 -2.13 16 8 C -0.06 -1.35 6.88 40.36 0.28 -1.08 16 9 C 0.58 17.37 7.75 86.45 0.67 18.04 16 10 O -0.58 -21.50 14.09 -4.34 -0.06 -21.56 16 11 N -0.69 -18.98 3.59 -439.88 -1.58 -20.55 16 12 C 0.15 5.68 2.98 46.39 0.14 5.82 16 13 H 0.05 2.14 7.84 -2.39 -0.02 2.12 16 14 C -0.12 -4.41 6.04 31.99 0.19 -4.22 16 15 C 0.13 5.65 3.80 46.23 0.18 5.82 16 16 H 0.08 3.77 6.67 -2.38 -0.02 3.75 16 17 C -0.12 -4.06 6.44 32.21 0.21 -3.85 16 18 C -0.11 -3.88 6.35 32.38 0.21 -3.67 16 19 C 0.12 5.17 5.35 46.40 0.25 5.42 16 20 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 21 N -0.62 -31.76 2.83 -614.39 -1.74 -33.50 16 22 C -0.33 -19.42 10.39 84.03 0.87 -18.55 16 23 H 0.05 3.00 7.95 -2.91 -0.02 2.98 16 24 C -0.08 -4.51 5.30 84.86 0.45 -4.06 16 25 N -0.95 -57.85 12.82 21.65 0.28 -57.58 16 26 Si 1.12 52.36 29.99 68.60 2.06 54.42 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 0.87 7.61 -2.39 -0.02 0.85 16 33 H 0.13 1.16 8.11 -2.38 -0.02 1.14 16 34 H 0.08 1.90 6.72 -2.38 -0.02 1.88 16 35 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.17 2.53 7.49 -2.91 -0.02 2.51 16 37 H 0.41 8.56 7.01 -92.71 -0.65 7.91 16 38 H 0.11 2.82 7.31 -2.39 -0.02 2.81 16 39 H 0.05 1.98 7.72 -2.38 -0.02 1.96 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 2.43 7.82 -2.39 -0.02 2.41 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 2.40 6.55 -2.39 -0.02 2.38 16 44 H 0.26 15.78 5.66 -92.71 -0.53 15.25 16 Total: -1.00 -74.19 365.84 4.11 -70.08 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.62 Total: 21.74 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.03 Total: -2.98 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -4.45 Total: -120.87 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.06 Total: 54.42 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -74.19 4.11 -70.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096556669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.510 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds