Wall clock time and date at job start Tue Mar 31 2020 21:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47198 * 2 1 4 4 C 1.35623 * 125.67968 * 263.07595 * 3 2 1 5 5 C 1.35509 * 108.85315 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 126.07603 * 180.02562 * 5 4 3 7 7 C 1.39888 * 107.85283 * 359.74234 * 5 4 3 8 8 C 1.37639 * 125.67203 * 83.10085 * 3 2 1 9 9 C 1.46669 * 126.22514 * 359.97438 * 8 3 2 10 10 O 1.21694 * 120.00114 * 5.38946 * 9 8 3 11 11 N 1.34774 * 120.00369 * 185.38922 * 9 8 3 12 12 C 1.46495 * 120.00426 * 174.99600 * 11 9 8 13 13 H 1.08997 * 110.68640 * 32.00845 * 12 11 9 14 14 C 1.54861 * 110.62269 * 269.02489 * 12 11 9 15 15 C 1.55840 * 103.44558 * 241.50749 * 14 12 11 16 16 H 1.08995 * 115.56438 * 158.81191 * 15 14 12 17 17 C 1.55846 * 105.06642 * 288.18117 * 15 14 12 18 18 C 1.55875 * 103.53307 * 72.42603 * 17 15 14 19 19 C 1.55841 * 110.62932 * 155.00143 * 12 11 9 20 20 H 1.08997 * 115.56220 * 319.67863 * 19 12 11 21 21 N 1.50241 * 101.05399 * 85.54850 * 19 12 11 22 22 C 1.36933 * 130.84086 * 233.98929 * 21 19 12 23 23 H 1.08000 * 120.00059 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00012 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00287 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47344 * 60.00394 * 26 24 22 28 28 H 1.48498 * 109.46979 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47085 * 300.00184 * 26 24 22 30 30 H 1.08997 * 109.47408 * 60.00061 * 1 2 3 31 31 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47198 * 299.99951 * 1 2 3 33 33 H 1.09005 * 109.46910 * 240.00286 * 2 1 3 34 34 H 1.09002 * 109.47415 * 120.00410 * 2 1 3 35 35 H 1.08008 * 125.57350 * 0.04170 * 4 3 2 36 36 H 1.08003 * 126.45566 * 180.25773 * 7 5 4 37 37 H 0.97007 * 119.99630 * 354.99843 * 11 9 8 38 38 H 1.08998 * 110.62418 * 123.02315 * 14 12 11 39 39 H 1.08991 * 110.62781 * 359.97438 * 14 12 11 40 40 H 1.09001 * 110.62599 * 190.31564 * 17 15 14 41 41 H 1.09000 * 110.62184 * 313.17096 * 17 15 14 42 42 H 1.08997 * 110.09624 * 241.13919 * 18 17 15 43 43 H 1.08995 * 111.59932 * 117.81071 * 18 17 15 44 44 H 0.96996 * 120.00851 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4072 2.0828 -1.0936 5 6 2.7956 3.3212 -0.7041 6 17 3.3758 4.5847 -1.7437 7 6 2.6397 3.4029 0.6836 8 6 2.1593 2.1827 1.1100 9 6 1.8490 1.8091 2.4940 10 8 1.5171 0.6680 2.7563 11 7 1.9314 2.7293 3.4752 12 6 1.5168 2.3865 4.8378 13 1 1.7081 1.3337 5.0451 14 6 0.0203 2.7216 5.0531 15 6 0.0472 3.7836 6.1933 16 1 -0.8362 4.4180 6.2662 17 6 0.4293 2.9889 7.4783 18 6 1.9396 2.6642 7.2707 19 6 2.2440 3.2918 5.8771 20 1 3.2953 3.4930 5.6714 21 7 1.3393 4.4910 5.8975 22 6 1.6091 5.8197 5.7052 23 1 2.6192 6.1412 5.4987 24 6 0.5841 6.7532 5.7748 25 7 -0.6470 6.3614 6.0260 26 14 0.9520 8.5656 5.5117 27 1 1.5253 8.7628 4.1561 28 1 -0.3033 9.3489 5.6374 29 1 1.9267 9.0262 6.5332 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.4072 1.7146 -2.1090 36 1 2.8572 4.2594 1.3045 37 1 2.2652 3.6188 3.2791 38 1 -0.5304 1.8349 5.3673 39 1 -0.4132 3.1432 4.1463 40 1 0.2982 3.6079 8.3658 41 1 -0.1635 2.0774 7.5564 42 1 2.0909 1.5850 7.2472 43 1 2.5583 3.1229 8.0419 44 1 -1.3633 7.0137 6.0750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098417297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:48 Heat of formation + Delta-G solvation = 33.531182 kcal Electronic energy + Delta-G solvation = -27616.290677 eV Core-core repulsion = 23788.855556 eV Total energy + Delta-G solvation = -3827.435121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.56329 -41.05794 -39.48389 -37.38440 -35.62716 -34.80051 -34.30852 -31.12966 -30.92888 -30.25588 -30.14520 -28.86978 -26.10939 -24.74569 -24.03281 -22.43164 -21.68445 -21.39339 -20.69438 -20.13270 -18.90602 -18.78805 -17.31430 -16.96161 -16.73308 -16.43084 -15.83454 -15.74985 -15.46994 -15.22308 -15.13542 -14.84323 -14.48063 -14.14041 -13.83150 -13.68857 -13.63937 -13.61936 -12.99000 -12.90503 -12.86306 -12.76906 -12.66892 -12.37623 -12.19534 -12.07790 -11.97440 -11.89783 -11.83879 -11.66601 -11.22854 -10.95132 -10.91759 -10.73843 -10.02493 -9.73405 -9.24326 -8.84524 -7.73817 -5.13161 0.34944 1.13061 1.43508 1.50923 1.52002 1.57526 1.74874 2.29005 2.47866 2.52594 3.39531 3.46828 3.68708 3.79696 3.96019 4.02600 4.08692 4.10190 4.19379 4.28104 4.38886 4.47643 4.47869 4.50260 4.63474 4.68722 4.74898 4.83412 4.84136 4.90991 4.95488 5.09538 5.16869 5.17980 5.20979 5.35782 5.40477 5.53436 5.60526 5.69456 5.75801 5.91701 6.08866 6.29811 6.57849 7.08284 7.17424 7.75165 8.60534 9.33314 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.004109 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.838950 B = 6812.911010 C = 8773.185599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.400 5.400 4 C 0.051 3.949 5 C -0.141 4.141 6 Cl -0.049 7.049 7 C -0.134 4.134 8 C -0.056 4.056 9 C 0.585 3.415 10 O -0.576 6.576 11 N -0.693 5.693 12 C 0.144 3.856 13 H 0.093 0.907 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.116 0.884 17 C -0.131 4.131 18 C -0.118 4.118 19 C 0.126 3.874 20 H 0.099 0.901 21 N -0.610 5.610 22 C -0.214 4.214 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.947 5.947 26 Si 0.970 3.030 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.282 1.282 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.215 0.785 36 H 0.149 0.851 37 H 0.405 0.595 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 -13.017 -13.262 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.073 5.073 4 C -0.086 4.086 5 C -0.174 4.174 6 Cl -0.020 7.020 7 C -0.161 4.161 8 C -0.170 4.170 9 C 0.374 3.626 10 O -0.458 6.458 11 N -0.341 5.341 12 C 0.037 3.963 13 H 0.111 0.889 14 C -0.173 4.173 15 C 0.033 3.967 16 H 0.133 0.867 17 C -0.170 4.170 18 C -0.157 4.157 19 C 0.018 3.982 20 H 0.117 0.883 21 N -0.332 5.332 22 C -0.343 4.343 23 H 0.102 0.898 24 C -0.257 4.257 25 N -0.597 5.597 26 Si 0.800 3.200 27 H -0.206 1.206 28 H -0.227 1.227 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.167 0.833 37 H 0.241 0.759 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.740 -13.767 -13.119 19.865 hybrid contribution -0.035 2.022 -0.020 2.022 sum 5.704 -11.745 -13.139 18.524 Atomic orbital electron populations 1.22036 0.93858 1.04043 1.01666 1.22294 0.96070 0.77796 1.06241 1.44240 1.45907 1.12519 1.04661 1.22256 1.02203 0.90775 0.93396 1.19992 1.13753 0.92311 0.91297 1.98319 1.87653 1.50446 1.65624 1.21399 1.03645 0.96592 0.94436 1.19921 1.15574 0.92878 0.88586 1.17103 0.76977 0.84730 0.83813 1.90721 1.50864 1.20052 1.84159 1.45669 1.64475 1.15297 1.08705 1.22459 0.94500 0.98887 0.80425 0.88928 1.23334 0.95739 0.98845 0.99404 1.23597 0.92011 0.90052 0.91057 0.86722 1.23132 0.96456 0.98980 0.98447 1.22983 0.95985 1.00073 0.96671 1.23365 0.94433 0.86553 0.93820 0.88270 1.46715 1.04243 1.00798 1.81407 1.19296 0.94060 0.81762 1.39193 0.89813 1.25368 0.95403 1.01266 1.03641 1.69695 0.99914 1.32711 1.57393 0.85263 0.76049 0.80683 0.78001 1.20601 1.22740 1.20829 0.91372 0.88553 0.94981 0.85086 0.89003 0.76811 0.83291 0.75943 0.91255 0.94901 0.94479 0.90866 0.89942 0.92034 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.23 71.98 0.74 -2.17 16 2 C 0.10 1.69 6.14 86.38 0.53 2.22 16 3 N -0.40 -9.10 2.76 -510.87 -1.41 -10.51 16 4 C 0.05 0.99 11.35 83.48 0.95 1.94 16 5 C -0.14 -3.37 6.66 22.04 0.15 -3.23 16 6 Cl -0.05 -1.09 29.30 -2.72 -0.08 -1.17 16 7 C -0.13 -3.73 10.35 22.59 0.23 -3.49 16 8 C -0.06 -1.62 6.88 40.35 0.28 -1.34 16 9 C 0.59 19.53 7.77 86.44 0.67 20.20 16 10 O -0.58 -20.79 14.14 -4.33 -0.06 -20.85 16 11 N -0.69 -23.71 5.06 -438.88 -2.22 -25.93 16 12 C 0.14 5.09 2.86 46.61 0.13 5.22 16 13 H 0.09 3.15 7.20 -2.39 -0.02 3.13 16 14 C -0.13 -5.31 6.23 32.21 0.20 -5.11 16 15 C 0.14 6.32 4.72 46.23 0.22 6.53 16 16 H 0.12 6.19 5.52 -2.39 -0.01 6.18 16 17 C -0.13 -4.95 6.46 32.57 0.21 -4.74 16 18 C -0.12 -3.90 6.53 32.57 0.21 -3.69 16 19 C 0.13 4.62 5.01 46.23 0.23 4.85 16 20 H 0.10 3.40 8.14 -2.39 -0.02 3.39 16 21 N -0.61 -28.44 2.98 -615.25 -1.83 -30.27 16 22 C -0.21 -11.13 10.59 84.03 0.89 -10.24 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 25 N -0.95 -54.58 10.46 21.65 0.23 -54.35 16 26 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 0.83 7.86 -2.39 -0.02 0.81 16 33 H 0.13 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.09 2.02 6.61 -2.39 -0.02 2.00 16 35 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 4.15 7.45 -2.91 -0.02 4.13 16 37 H 0.41 13.93 7.56 -92.70 -0.70 13.23 16 38 H 0.07 2.51 7.82 -2.39 -0.02 2.49 16 39 H 0.03 1.46 7.98 -2.39 -0.02 1.44 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 42 H 0.08 2.26 7.85 -2.39 -0.02 2.24 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -64.68 369.56 3.08 -61.60 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.32 Total: 30.83 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.11 Total: 3.94 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -5.24 Total: -121.06 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -64.68 3.08 -61.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098417297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.128 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds