Wall clock time and date at job start Tue Mar 31 2020 20:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.91988 * 2 1 4 4 C 1.55392 * 111.18539 * 235.94361 * 2 1 3 5 5 N 1.47431 * 104.87127 * 204.98146 * 4 2 1 6 6 C 1.36931 * 125.64700 * 204.16955 * 5 4 2 7 7 H 1.08004 * 119.99907 * 179.97438 * 6 5 4 8 8 C 1.38813 * 120.00300 * 359.95803 * 6 5 4 9 9 N 1.31622 * 120.00014 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46942 * 90.00018 * 10 8 6 12 12 H 1.48499 * 109.46996 * 209.99955 * 10 8 6 13 13 H 1.48500 * 109.47208 * 329.99950 * 10 8 6 14 14 C 1.47019 * 108.70142 * 24.13359 * 5 4 2 15 15 C 1.54321 * 107.27531 * 358.94050 * 14 5 4 16 16 H 1.09002 * 110.72109 * 96.17040 * 15 14 5 17 17 C 1.53003 * 110.72129 * 219.26706 * 15 14 5 18 18 N 1.46501 * 109.47017 * 291.15384 * 17 15 14 19 19 C 1.34771 * 119.99775 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99989 * 179.97438 * 19 18 17 22 22 C 1.50704 * 109.47423 * 180.02562 * 21 19 18 23 23 C 1.38654 * 120.79220 * 100.00033 * 22 21 19 24 24 C 1.38183 * 119.17546 * 179.97438 * 23 22 21 25 25 N 1.31884 * 120.79766 * 359.97438 * 24 23 22 26 26 C 1.31846 * 121.73556 * 0.02562 * 25 24 23 27 27 C 1.38353 * 120.74631 * 359.73733 * 26 25 24 28 28 Cl 1.73596 * 120.43674 * 180.28884 * 27 26 25 29 29 H 1.08998 * 109.47366 * 296.09964 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09163 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09108 * 1 2 3 32 32 H 1.08999 * 110.34334 * 86.13843 * 4 2 1 33 33 H 1.08998 * 110.44545 * 323.87993 * 4 2 1 34 34 H 0.96992 * 120.00405 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.88251 * 239.51790 * 14 5 4 36 36 H 1.09004 * 109.88394 * 118.35703 * 14 5 4 37 37 H 1.09003 * 109.46901 * 51.15665 * 17 15 14 38 38 H 1.09004 * 109.47093 * 171.15492 * 17 15 14 39 39 H 0.97002 * 120.00115 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.47468 * 300.00468 * 21 19 18 41 41 H 1.09004 * 109.46934 * 60.00545 * 21 19 18 42 42 H 1.08000 * 120.41331 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.60262 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.62675 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4326 -1.2461 -0.7690 6 6 4.4723 -1.5694 -1.5994 7 1 5.4201 -1.8775 -1.1832 8 6 4.3081 -1.5013 -2.9761 9 7 3.1531 -1.1256 -3.4833 10 14 5.7262 -1.9429 -4.1089 11 1 5.6749 -3.3932 -4.4240 12 1 5.6184 -1.1592 -5.3657 13 1 7.0127 -1.6275 -3.4377 14 6 3.4690 -1.2743 0.7005 15 6 2.0861 -0.8080 1.2022 16 1 1.4467 -1.6633 1.4209 17 6 2.2308 0.0864 2.4350 18 7 2.6988 -0.7158 3.5681 19 6 2.8998 -0.1349 4.7675 20 8 2.6929 1.0517 4.9090 21 6 3.3807 -0.9602 5.9332 22 6 3.5234 -0.0792 7.1475 23 6 2.5421 -0.0559 8.1268 24 6 2.7074 0.7640 9.2268 25 7 3.7824 1.5178 9.3516 26 6 4.7360 1.5220 8.4412 27 6 4.6425 0.7235 7.3152 28 17 5.9063 0.7298 6.1252 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8529 31 1 -0.3634 -1.0252 -0.0701 32 1 2.1643 -0.1784 -2.0848 33 1 1.4599 -1.6760 -1.4044 34 1 3.0381 -1.0784 -4.4452 35 1 4.2428 -0.5988 1.0652 36 1 3.6663 -2.2888 1.0471 37 1 2.9515 0.8774 2.2275 38 1 1.2649 0.5295 2.6779 39 1 2.8647 -1.6647 3.4548 40 1 2.6595 -1.7506 6.1409 41 1 4.3463 -1.4039 5.6904 42 1 1.6599 -0.6715 8.0315 43 1 1.9472 0.7878 9.9935 44 1 5.6017 2.1531 8.5777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102371496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:49 Heat of formation + Delta-G solvation = 8.483980 kcal Electronic energy + Delta-G solvation = -26266.653982 eV Core-core repulsion = 22438.132732 eV Total energy + Delta-G solvation = -3828.521249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80197 -39.56835 -38.00290 -36.88189 -34.76065 -34.15288 -32.97335 -31.37952 -30.78496 -29.96884 -28.36000 -26.00034 -25.08396 -23.90299 -23.31008 -22.46108 -20.71152 -19.86866 -19.31307 -17.44668 -17.26565 -17.09460 -16.72734 -16.39330 -15.76758 -15.41197 -14.96092 -14.54726 -14.39570 -14.26422 -13.82461 -13.54644 -13.35859 -13.18122 -12.97140 -12.64931 -12.61658 -12.26584 -11.99469 -11.91527 -11.58209 -11.48069 -11.43777 -11.17655 -10.90714 -10.82259 -10.33416 -10.20370 -10.04476 -9.95301 -9.92040 -9.87566 -9.71218 -9.39221 -9.24444 -9.01215 -8.67873 -6.86303 -5.67997 -3.09912 0.60492 0.73578 1.77826 2.55836 3.06906 3.37777 3.42398 3.43019 3.44933 4.04570 4.07769 4.24766 4.45825 4.54870 4.68434 4.85832 4.92837 5.09244 5.14231 5.21446 5.22469 5.26935 5.44881 5.47013 5.54867 5.70544 5.73244 5.84098 6.03224 6.08301 6.13772 6.16874 6.23215 6.40137 6.49416 6.56384 6.58369 6.75723 6.91666 7.45812 7.48829 7.50502 7.60182 7.83826 8.15786 8.33817 9.19458 9.80273 10.44988 11.35715 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002439 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.860898 B =11476.310111 C =12605.222334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.110 4.110 16 H 0.076 0.924 17 C 0.134 3.866 18 N -0.723 5.723 19 C 0.516 3.484 20 O -0.533 6.533 21 C -0.113 4.113 22 C -0.010 4.010 23 C -0.151 4.151 24 C 0.101 3.899 25 N -0.472 5.472 26 C 0.114 3.886 27 C -0.074 4.074 28 Cl -0.046 7.046 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.013 0.987 34 H 0.252 0.748 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.402 0.598 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -0.019 23.184 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.129 4.129 16 H 0.095 0.905 17 C 0.010 3.990 18 N -0.374 5.374 19 C 0.301 3.699 20 O -0.410 6.410 21 C -0.153 4.153 22 C -0.019 4.019 23 C -0.171 4.171 24 C -0.056 4.056 25 N -0.181 5.181 26 C -0.044 4.044 27 C -0.103 4.103 28 Cl -0.017 7.017 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.236 0.764 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.594 1.369 23.666 23.847 hybrid contribution 0.803 -1.376 -1.558 2.229 sum -1.791 -0.008 22.108 22.181 Atomic orbital electron populations 1.21643 0.95479 1.01393 1.00662 1.22682 0.94572 0.99512 0.96415 0.91047 1.22068 0.84007 0.95827 0.94638 1.44479 1.10523 1.79035 0.99014 1.19064 0.90975 1.37826 0.87252 0.90563 1.24790 0.97300 1.01951 0.96623 1.69789 1.22485 1.53800 1.10966 0.86079 0.81255 0.77820 0.80387 1.21634 1.21615 1.20706 1.21330 0.93416 0.97041 0.86668 1.22497 0.98616 0.98129 0.93655 0.90533 1.21462 0.99526 0.93893 0.84083 1.46035 1.68178 1.13217 1.09964 1.20132 0.77928 0.88179 0.83626 1.90740 1.50925 1.15429 1.83883 1.20776 1.05236 0.98067 0.91184 1.19621 0.92324 0.94938 0.95066 1.22049 0.99283 1.01196 0.94554 1.22836 0.94906 0.91289 0.96549 1.67805 1.01681 1.20224 1.28418 1.22766 0.97810 0.95627 0.88193 1.21993 0.92978 1.01298 0.94009 1.98405 1.49763 1.97464 1.56054 0.93688 0.92646 0.92960 0.87626 0.96878 0.93703 0.95840 0.96445 0.91268 0.91633 0.76406 0.87031 0.86896 0.83865 0.81971 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.32 37.16 0.35 -1.66 16 2 C -0.11 -2.01 3.11 -88.21 -0.27 -2.28 16 3 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 4 C 0.16 3.75 5.38 -2.26 -0.01 3.74 16 5 N -0.60 -15.16 3.40 -169.76 -0.58 -15.74 16 6 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 8 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 9 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 10 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.14 2.79 6.64 -3.07 -0.02 2.77 16 15 C -0.11 -1.75 2.44 -88.78 -0.22 -1.97 16 16 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 17 C 0.13 1.89 5.00 -4.04 -0.02 1.87 16 18 N -0.72 -8.48 5.43 -60.29 -0.33 -8.81 16 19 C 0.52 6.32 7.72 -10.99 -0.08 6.24 16 20 O -0.53 -8.66 15.97 5.56 0.09 -8.58 16 21 C -0.11 -0.96 5.35 -29.03 -0.16 -1.12 16 22 C -0.01 -0.10 4.45 -104.28 -0.46 -0.57 16 23 C -0.15 -1.22 9.78 -39.45 -0.39 -1.61 16 24 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 25 N -0.47 -4.95 10.36 -13.22 -0.14 -5.09 16 26 C 0.11 1.16 10.99 -17.50 -0.19 0.97 16 27 C -0.07 -0.79 6.26 -39.35 -0.25 -1.04 16 28 Cl -0.05 -0.51 27.60 -51.86 -1.43 -1.94 16 29 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 33 H 0.01 0.33 8.00 -51.93 -0.42 -0.08 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 38 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 39 H 0.40 3.81 8.40 -40.82 -0.34 3.47 16 40 H 0.11 0.60 8.04 -51.93 -0.42 0.18 16 41 H 0.11 0.86 7.45 -51.93 -0.39 0.47 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -33.50 377.63 -9.77 -43.27 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.44 Total: 1.02 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.17 Total: -0.70 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.48 Total: -55.67 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.43 Total: -1.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.50 -9.77 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102371496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.756 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds