Wall clock time and date at job start Tue Mar 31 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.91988 * 2 1 4 4 C 1.55392 * 111.18539 * 235.94361 * 2 1 3 5 5 N 1.47431 * 104.87127 * 204.98146 * 4 2 1 6 6 C 1.36931 * 125.64700 * 204.16955 * 5 4 2 7 7 H 1.08004 * 119.99907 * 179.97438 * 6 5 4 8 8 C 1.38813 * 120.00300 * 359.95803 * 6 5 4 9 9 N 1.31622 * 120.00014 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46942 * 90.00018 * 10 8 6 12 12 H 1.48499 * 109.46996 * 209.99955 * 10 8 6 13 13 H 1.48500 * 109.47208 * 329.99950 * 10 8 6 14 14 C 1.47019 * 108.70142 * 24.13359 * 5 4 2 15 15 C 1.54321 * 107.27531 * 358.94050 * 14 5 4 16 16 H 1.09002 * 110.72109 * 96.17040 * 15 14 5 17 17 C 1.53003 * 110.72129 * 219.26706 * 15 14 5 18 18 N 1.46501 * 109.47017 * 291.15384 * 17 15 14 19 19 C 1.34771 * 119.99775 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99989 * 179.97438 * 19 18 17 22 22 C 1.50704 * 109.47423 * 180.02562 * 21 19 18 23 23 C 1.38654 * 120.79220 * 100.00033 * 22 21 19 24 24 C 1.38183 * 119.17546 * 179.97438 * 23 22 21 25 25 N 1.31884 * 120.79766 * 359.97438 * 24 23 22 26 26 C 1.31846 * 121.73556 * 0.02562 * 25 24 23 27 27 C 1.38353 * 120.74631 * 359.73733 * 26 25 24 28 28 Cl 1.73596 * 120.43674 * 180.28884 * 27 26 25 29 29 H 1.08998 * 109.47366 * 296.09964 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09163 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09108 * 1 2 3 32 32 H 1.08999 * 110.34334 * 86.13843 * 4 2 1 33 33 H 1.08998 * 110.44545 * 323.87993 * 4 2 1 34 34 H 0.96992 * 120.00405 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.88251 * 239.51790 * 14 5 4 36 36 H 1.09004 * 109.88394 * 118.35703 * 14 5 4 37 37 H 1.09003 * 109.46901 * 51.15665 * 17 15 14 38 38 H 1.09004 * 109.47093 * 171.15492 * 17 15 14 39 39 H 0.97002 * 120.00115 * 0.02562 * 18 17 15 40 40 H 1.09003 * 109.47468 * 300.00468 * 21 19 18 41 41 H 1.09004 * 109.46934 * 60.00545 * 21 19 18 42 42 H 1.08000 * 120.41331 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.60262 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.62675 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2004 5 7 3.4326 -1.2461 -0.7690 6 6 4.4723 -1.5694 -1.5994 7 1 5.4201 -1.8775 -1.1832 8 6 4.3081 -1.5013 -2.9761 9 7 3.1531 -1.1256 -3.4833 10 14 5.7262 -1.9429 -4.1089 11 1 5.6749 -3.3932 -4.4240 12 1 5.6184 -1.1592 -5.3657 13 1 7.0127 -1.6275 -3.4377 14 6 3.4690 -1.2743 0.7005 15 6 2.0861 -0.8080 1.2022 16 1 1.4467 -1.6633 1.4209 17 6 2.2308 0.0864 2.4350 18 7 2.6988 -0.7158 3.5681 19 6 2.8998 -0.1349 4.7675 20 8 2.6929 1.0517 4.9090 21 6 3.3807 -0.9602 5.9332 22 6 3.5234 -0.0792 7.1475 23 6 2.5421 -0.0559 8.1268 24 6 2.7074 0.7640 9.2268 25 7 3.7824 1.5178 9.3516 26 6 4.7360 1.5220 8.4412 27 6 4.6425 0.7235 7.3152 28 17 5.9063 0.7298 6.1252 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8529 31 1 -0.3634 -1.0252 -0.0701 32 1 2.1643 -0.1784 -2.0848 33 1 1.4599 -1.6760 -1.4044 34 1 3.0381 -1.0784 -4.4452 35 1 4.2428 -0.5988 1.0652 36 1 3.6663 -2.2888 1.0471 37 1 2.9515 0.8774 2.2275 38 1 1.2649 0.5295 2.6779 39 1 2.8647 -1.6647 3.4548 40 1 2.6595 -1.7506 6.1409 41 1 4.3463 -1.4039 5.6904 42 1 1.6599 -0.6715 8.0315 43 1 1.9472 0.7878 9.9935 44 1 5.6017 2.1531 8.5777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102371496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:46 Heat of formation + Delta-G solvation = -13.055291 kcal Electronic energy + Delta-G solvation = -26267.587995 eV Core-core repulsion = 22438.132732 eV Total energy + Delta-G solvation = -3829.455262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.53928 -40.56540 -39.48347 -37.66402 -36.07641 -34.90334 -34.64350 -32.55860 -32.03434 -31.16328 -29.39488 -27.79080 -26.53233 -24.64221 -24.55595 -23.51738 -21.84346 -21.41586 -20.68775 -18.90408 -18.23350 -17.96425 -17.82338 -17.23729 -16.96658 -16.51274 -16.37772 -15.81667 -15.60944 -15.28424 -14.95289 -14.74093 -14.54293 -14.41909 -14.06596 -13.82745 -13.55510 -13.47759 -13.38274 -13.03976 -13.00058 -12.75817 -12.71037 -12.57631 -12.45599 -12.27748 -11.97861 -11.84222 -11.60640 -11.41028 -11.29520 -11.02274 -10.74793 -10.60911 -10.51115 -10.06824 -9.95274 -8.87776 -7.77606 -5.21814 -0.07155 0.05904 1.02295 1.45403 1.46935 1.55573 1.64263 2.18703 2.48613 2.70676 3.31533 3.37140 3.46785 3.62775 3.65958 3.76453 3.89334 3.92847 3.95580 3.99432 4.22908 4.39535 4.40949 4.50831 4.55180 4.63456 4.64639 4.75237 4.77943 4.84065 4.87383 4.98530 5.07739 5.10466 5.17887 5.36753 5.40588 5.44922 5.51285 5.52936 5.72701 5.85006 6.32132 6.55893 6.82367 7.11245 7.25090 7.79285 8.42622 9.23798 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002439 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.860898 B =11476.310111 C =12605.222334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.062 0.938 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.079 0.921 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.138 3.862 15 C -0.088 4.088 16 H 0.099 0.901 17 C 0.147 3.853 18 N -0.716 5.716 19 C 0.517 3.483 20 O -0.576 6.576 21 C -0.106 4.106 22 C -0.025 4.025 23 C -0.146 4.146 24 C 0.096 3.904 25 N -0.495 5.495 26 C 0.100 3.900 27 C -0.090 4.090 28 Cl -0.059 7.059 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.066 0.934 33 H -0.008 1.008 34 H 0.247 0.753 35 H 0.017 0.983 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.177 0.823 43 H 0.193 0.807 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -1.250 25.292 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.080 0.920 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.367 4.367 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.013 3.987 15 C -0.107 4.107 16 H 0.117 0.883 17 C 0.023 3.977 18 N -0.368 5.368 19 C 0.304 3.696 20 O -0.455 6.455 21 C -0.145 4.145 22 C -0.034 4.034 23 C -0.165 4.165 24 C -0.061 4.061 25 N -0.204 5.204 26 C -0.057 4.057 27 C -0.119 4.119 28 Cl -0.031 7.031 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.010 0.990 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.252 0.748 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.194 0.806 43 H 0.210 0.790 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.564 0.108 25.809 26.054 hybrid contribution 1.099 -0.989 -2.156 2.614 sum -2.465 -0.882 23.653 23.797 Atomic orbital electron populations 1.21591 0.92674 1.02018 1.02125 1.22515 0.96766 0.98206 0.94734 0.91962 1.21841 0.83731 0.94906 0.95830 1.44809 1.10444 1.79052 1.01229 1.19429 0.91898 1.37267 0.88082 0.90331 1.25617 0.99715 1.02579 0.98118 1.70056 1.24172 1.54916 1.10644 0.85085 0.78801 0.77370 0.78127 1.21195 1.22054 1.19633 1.21510 0.95623 0.97657 0.83924 1.22329 0.96351 0.98621 0.93402 0.88315 1.21133 0.99452 0.93050 0.84092 1.45913 1.67861 1.13705 1.09285 1.20722 0.76796 0.87884 0.84224 1.90729 1.52778 1.17465 1.84570 1.20825 1.06701 0.98037 0.88930 1.19916 0.92401 0.95119 0.96011 1.22440 0.99636 1.00882 0.93570 1.23430 0.94757 0.90469 0.97416 1.67837 1.02509 1.21252 1.28792 1.22943 0.98375 0.96014 0.88365 1.22153 0.93395 1.02321 0.94037 1.98393 1.50493 1.97583 1.56598 0.90764 0.92891 0.92513 0.91573 0.98991 0.94375 0.96503 0.95094 0.93644 0.90655 0.74824 0.83038 0.85975 0.80573 0.78987 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.32 71.98 0.67 -2.86 16 2 C -0.10 -3.60 3.11 -9.23 -0.03 -3.63 16 3 H 0.06 2.31 8.05 -2.39 -0.02 2.29 16 4 C 0.16 7.81 5.38 87.02 0.47 8.28 16 5 N -0.63 -31.97 3.40 -691.01 -2.35 -34.31 16 6 C -0.24 -13.30 10.27 84.03 0.86 -12.43 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 9 N -0.95 -56.50 10.09 21.65 0.22 -56.28 16 10 Si 0.98 45.72 29.55 68.60 2.03 47.74 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.14 5.32 6.64 86.73 0.58 5.90 16 15 C -0.09 -2.63 2.44 -9.60 -0.02 -2.66 16 16 H 0.10 2.59 8.04 -2.39 -0.02 2.57 16 17 C 0.15 3.86 5.00 86.38 0.43 4.29 16 18 N -0.72 -14.84 5.43 -463.05 -2.51 -17.36 16 19 C 0.52 11.41 7.72 87.66 0.68 12.09 16 20 O -0.58 -17.90 15.97 -3.03 -0.05 -17.95 16 21 C -0.11 -1.47 5.35 29.10 0.16 -1.31 16 22 C -0.03 -0.44 4.45 -19.64 -0.09 -0.53 16 23 C -0.15 -1.90 9.78 22.36 0.22 -1.68 16 24 C 0.10 1.37 11.18 84.67 0.95 2.32 16 25 N -0.49 -9.79 10.36 -195.75 -2.03 -11.82 16 26 C 0.10 2.00 10.99 84.72 0.93 2.93 16 27 C -0.09 -1.85 6.26 22.42 0.14 -1.71 16 28 Cl -0.06 -1.30 27.60 -2.72 -0.08 -1.37 16 29 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 1.54 8.09 -2.39 -0.02 1.52 16 32 H 0.07 3.73 5.87 -2.39 -0.01 3.71 16 33 H -0.01 -0.40 8.00 -2.39 -0.02 -0.42 16 34 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.02 0.68 7.73 -2.39 -0.02 0.66 16 36 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 38 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 39 H 0.42 6.44 8.40 -92.71 -0.78 5.66 16 40 H 0.15 0.87 8.04 -2.39 -0.02 0.85 16 41 H 0.12 1.51 7.45 -2.38 -0.02 1.49 16 42 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 43 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -75.69 377.63 1.87 -73.81 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.24 Total: 11.92 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 6.41 Total: 5.61 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -6.67 Total: -119.76 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -75.69 1.87 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102371496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.758 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds