Wall clock time and date at job start Tue Mar 31 2020 20:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.91696 * 2 1 4 4 C 1.54907 * 111.00453 * 236.10053 * 2 1 3 5 5 N 1.47420 * 104.83398 * 204.91500 * 4 2 1 6 6 C 1.36937 * 125.64952 * 204.09412 * 5 4 2 7 7 H 1.08006 * 119.99863 * 180.02562 * 6 5 4 8 8 C 1.38814 * 120.00091 * 0.04198 * 6 5 4 9 9 N 1.31611 * 119.99839 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47372 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47220 * 119.99693 * 10 8 6 13 13 H 1.48498 * 109.47288 * 239.99473 * 10 8 6 14 14 C 1.47022 * 108.70352 * 24.12749 * 5 4 2 15 15 C 1.54319 * 107.27092 * 358.94376 * 14 5 4 16 16 H 1.08998 * 110.72228 * 96.34328 * 15 14 5 17 17 C 1.53003 * 110.72083 * 219.44706 * 15 14 5 18 18 N 1.46499 * 109.46671 * 293.54283 * 17 15 14 19 19 C 1.34777 * 120.00065 * 180.02562 * 18 17 15 20 20 O 1.21343 * 120.00084 * 359.97438 * 19 18 17 21 21 C 1.49454 * 120.00164 * 180.02562 * 19 18 17 22 22 O 1.21353 * 119.99759 * 359.97438 * 21 19 18 23 23 N 1.34773 * 120.00135 * 180.27489 * 21 19 18 24 24 C 1.46500 * 120.00432 * 179.72278 * 23 21 19 25 25 C 1.52991 * 109.47288 * 179.97438 * 24 23 21 26 26 F 1.39892 * 109.47442 * 60.00153 * 25 24 23 27 27 F 1.39904 * 109.47053 * 179.97438 * 25 24 23 28 28 F 1.39905 * 109.47108 * 299.99715 * 25 24 23 29 29 H 1.09003 * 109.47403 * 296.09516 * 1 2 3 30 30 H 1.08998 * 109.47739 * 56.09731 * 1 2 3 31 31 H 1.09005 * 109.47293 * 176.09934 * 1 2 3 32 32 H 1.09002 * 110.36889 * 86.07917 * 4 2 1 33 33 H 1.09004 * 110.36894 * 323.75237 * 4 2 1 34 34 H 0.97006 * 120.00413 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.88245 * 239.52367 * 14 5 4 36 36 H 1.09002 * 109.87935 * 118.35854 * 14 5 4 37 37 H 1.08994 * 109.47336 * 173.54636 * 17 15 14 38 38 H 1.08992 * 109.47300 * 53.53776 * 17 15 14 39 39 H 0.97000 * 120.00380 * 359.97438 * 18 17 15 40 40 H 0.97001 * 120.00114 * 359.71542 * 23 21 19 41 41 H 1.09000 * 109.46865 * 300.00301 * 24 23 21 42 42 H 1.09001 * 109.46879 * 59.99699 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2430 -0.7734 6 6 4.4639 -1.5666 -1.6073 7 1 5.4124 -1.8768 -1.1943 8 6 4.2961 -1.4955 -2.9834 9 7 3.1402 -1.1176 -3.4867 10 14 5.7103 -1.9375 -4.1209 11 1 6.8927 -2.3282 -3.3119 12 1 5.3092 -3.0716 -4.9918 13 1 6.0533 -0.7638 -4.9634 14 6 3.4674 -1.2741 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4479 -1.6633 1.4238 17 6 2.2350 0.0876 2.4338 18 7 2.7615 -0.7013 3.5503 19 6 2.9754 -0.1175 4.7461 20 8 2.7322 1.0616 4.8978 21 6 3.5131 -0.9221 5.8850 22 8 3.7568 -2.1012 5.7332 23 7 3.7217 -0.3396 7.0823 24 6 4.2431 -1.1297 8.2005 25 6 4.3866 -0.2355 9.4336 26 9 3.1363 0.2897 9.7768 27 9 4.8840 -0.9902 10.5015 28 9 5.2704 0.8113 9.1502 29 1 -0.3634 0.4520 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1719 -2.0837 33 1 1.4518 -1.6704 -1.4025 34 1 3.0227 -1.0682 -4.4483 35 1 4.2426 -0.5997 1.0598 36 1 3.6650 -2.2894 1.0399 37 1 1.2619 0.4968 2.7051 38 1 2.9223 0.9030 2.2091 39 1 2.9556 -1.6439 3.4292 40 1 3.5268 0.6028 7.2038 41 1 3.5548 -1.9456 8.4209 42 1 5.2175 -1.5386 7.9332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102487095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:54 Heat of formation + Delta-G solvation = -201.854489 kcal Electronic energy + Delta-G solvation = -28987.801459 eV Core-core repulsion = 24167.593344 eV Total energy + Delta-G solvation = -4820.208115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.72434 -48.23673 -48.19344 -40.94720 -39.03443 -37.99745 -35.98542 -34.74657 -32.99400 -30.79389 -30.31338 -29.50895 -26.34584 -25.62588 -24.65362 -23.45194 -22.51868 -20.98638 -19.97433 -19.79479 -19.19665 -19.02776 -18.96325 -17.61059 -17.12805 -16.78742 -16.41533 -15.78447 -15.63562 -15.26465 -15.07461 -14.88570 -14.75885 -14.61380 -14.35608 -14.33200 -14.28515 -14.00630 -13.76322 -13.54690 -13.14201 -12.78926 -12.70226 -12.55953 -12.03533 -11.98113 -11.60202 -11.50030 -11.20036 -10.90912 -10.83379 -10.31351 -10.07035 -10.04856 -10.00871 -9.94032 -9.78241 -9.44181 -9.25207 -8.68088 -6.86301 -5.68051 -3.09818 1.09554 1.66468 2.12107 2.91114 3.05478 3.14372 3.38267 3.38778 3.44047 3.46362 3.65986 4.17172 4.46391 4.47807 4.62261 4.97292 5.14502 5.22303 5.35791 5.45608 5.51453 5.66487 5.77272 5.95539 5.99208 6.09178 6.18849 6.20040 6.40474 6.47599 6.54953 6.58213 6.72626 6.88843 7.03707 7.34983 7.50125 7.61037 7.75559 7.83381 8.33491 9.19615 9.80285 10.44598 11.35839 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.002087 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.062050 B =13414.902860 C =14355.146423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.222 4.222 7 H 0.078 0.922 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.139 3.861 15 C -0.112 4.112 16 H 0.080 0.920 17 C 0.129 3.871 18 N -0.687 5.687 19 C 0.507 3.493 20 O -0.521 6.521 21 C 0.518 3.482 22 O -0.506 6.506 23 N -0.707 5.707 24 C 0.076 3.924 25 C 0.450 3.550 26 F -0.176 7.176 27 F -0.171 7.171 28 F -0.175 7.175 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.014 0.986 34 H 0.252 0.748 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.415 0.585 40 H 0.421 0.579 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 1.933 24.481 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.091 0.909 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.013 3.987 15 C -0.131 4.131 16 H 0.098 0.902 17 C 0.007 3.993 18 N -0.339 5.339 19 C 0.286 3.714 20 O -0.397 6.397 21 C 0.299 3.701 22 O -0.379 6.379 23 N -0.364 5.364 24 C -0.049 4.049 25 C 0.395 3.605 26 F -0.157 7.157 27 F -0.153 7.153 28 F -0.157 7.157 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.259 0.741 41 H 0.139 0.861 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.063 1.911 24.250 24.413 hybrid contribution 0.791 -0.211 -0.259 0.859 sum -1.271 1.700 23.991 24.085 Atomic orbital electron populations 1.21661 0.95404 1.01514 1.00713 1.22608 0.94655 0.99516 0.96221 0.90917 1.22002 0.84046 0.95925 0.94649 1.44489 1.10592 1.79005 0.98951 1.19123 0.91056 1.37654 0.87201 0.90458 1.24788 0.97311 1.01969 0.96636 1.69795 1.22367 1.53885 1.10998 0.85999 0.81111 0.77614 0.80779 1.20533 1.21749 1.21730 1.21351 0.93254 0.97320 0.86764 1.22534 0.98977 0.98237 0.93380 0.90184 1.21679 0.99311 0.94252 0.84066 1.45912 1.63022 1.15192 1.09799 1.19709 0.80288 0.87359 0.84007 1.90787 1.50748 1.15186 1.83010 1.20320 0.78691 0.87555 0.83514 1.90820 1.49000 1.15320 1.82804 1.45356 1.66445 1.15066 1.09509 1.22562 1.05463 0.93810 0.83093 1.20450 0.74284 0.80097 0.85676 1.93248 1.41595 1.87634 1.93271 1.93242 1.87694 1.75792 1.58555 1.93257 1.69183 1.59853 1.93378 0.93645 0.92576 0.92884 0.87520 0.96824 0.93757 0.95774 0.96155 0.90795 0.90458 0.74857 0.74124 0.86092 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.31 37.15 0.35 -1.61 16 2 C -0.11 -1.92 3.09 -88.47 -0.27 -2.19 16 3 H 0.07 1.28 8.05 -51.93 -0.42 0.87 16 4 C 0.16 3.69 5.36 -2.53 -0.01 3.68 16 5 N -0.60 -15.08 3.39 -170.07 -0.58 -15.66 16 6 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.47 10.09 55.49 0.56 -25.92 16 10 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 15 C -0.11 -1.76 2.48 -88.78 -0.22 -1.98 16 16 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 17 C 0.13 1.74 4.99 -4.04 -0.02 1.72 16 18 N -0.69 -8.46 5.39 -60.73 -0.33 -8.79 16 19 C 0.51 6.22 7.89 -11.58 -0.09 6.13 16 20 O -0.52 -7.37 16.48 5.50 0.09 -7.28 16 21 C 0.52 5.49 7.89 -11.59 -0.09 5.40 16 22 O -0.51 -6.25 16.48 5.49 0.09 -6.16 16 23 N -0.71 -5.57 5.41 -60.73 -0.33 -5.90 16 24 C 0.08 0.43 5.64 -4.05 -0.02 0.40 16 25 C 0.45 2.71 3.11 37.15 0.12 2.82 16 26 F -0.18 -1.23 17.18 2.25 0.04 -1.19 16 27 F -0.17 -1.10 17.32 2.25 0.04 -1.06 16 28 F -0.18 -1.27 17.18 2.25 0.04 -1.23 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.11 2.83 5.87 -51.93 -0.31 2.53 16 33 H 0.01 0.34 7.98 -51.93 -0.41 -0.07 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 39 H 0.41 4.87 7.80 -40.82 -0.32 4.56 16 40 H 0.42 3.12 7.83 -40.82 -0.32 2.80 16 41 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -31.58 366.29 -5.94 -37.52 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.52 Total: 2.85 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.54 Total: 10.41 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.67 Total: -56.26 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.18 Total: -13.44 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.12 Total: -3.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.58 -5.94 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102487095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.338 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds