Wall clock time and date at job start Tue Mar 31 2020 20:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.91696 * 2 1 4 4 C 1.54907 * 111.00453 * 236.10053 * 2 1 3 5 5 N 1.47420 * 104.83398 * 204.91500 * 4 2 1 6 6 C 1.36937 * 125.64952 * 204.09412 * 5 4 2 7 7 H 1.08006 * 119.99863 * 180.02562 * 6 5 4 8 8 C 1.38814 * 120.00091 * 0.04198 * 6 5 4 9 9 N 1.31611 * 119.99839 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47372 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47220 * 119.99693 * 10 8 6 13 13 H 1.48498 * 109.47288 * 239.99473 * 10 8 6 14 14 C 1.47022 * 108.70352 * 24.12749 * 5 4 2 15 15 C 1.54319 * 107.27092 * 358.94376 * 14 5 4 16 16 H 1.08998 * 110.72228 * 96.34328 * 15 14 5 17 17 C 1.53003 * 110.72083 * 219.44706 * 15 14 5 18 18 N 1.46499 * 109.46671 * 293.54283 * 17 15 14 19 19 C 1.34777 * 120.00065 * 180.02562 * 18 17 15 20 20 O 1.21343 * 120.00084 * 359.97438 * 19 18 17 21 21 C 1.49454 * 120.00164 * 180.02562 * 19 18 17 22 22 O 1.21353 * 119.99759 * 359.97438 * 21 19 18 23 23 N 1.34773 * 120.00135 * 180.27489 * 21 19 18 24 24 C 1.46500 * 120.00432 * 179.72278 * 23 21 19 25 25 C 1.52991 * 109.47288 * 179.97438 * 24 23 21 26 26 F 1.39892 * 109.47442 * 60.00153 * 25 24 23 27 27 F 1.39904 * 109.47053 * 179.97438 * 25 24 23 28 28 F 1.39905 * 109.47108 * 299.99715 * 25 24 23 29 29 H 1.09003 * 109.47403 * 296.09516 * 1 2 3 30 30 H 1.08998 * 109.47739 * 56.09731 * 1 2 3 31 31 H 1.09005 * 109.47293 * 176.09934 * 1 2 3 32 32 H 1.09002 * 110.36889 * 86.07917 * 4 2 1 33 33 H 1.09004 * 110.36894 * 323.75237 * 4 2 1 34 34 H 0.97006 * 120.00413 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.88245 * 239.52367 * 14 5 4 36 36 H 1.09002 * 109.87935 * 118.35854 * 14 5 4 37 37 H 1.08994 * 109.47336 * 173.54636 * 17 15 14 38 38 H 1.08992 * 109.47300 * 53.53776 * 17 15 14 39 39 H 0.97000 * 120.00380 * 359.97438 * 18 17 15 40 40 H 0.97001 * 120.00114 * 359.71542 * 23 21 19 41 41 H 1.09000 * 109.46865 * 300.00301 * 24 23 21 42 42 H 1.09001 * 109.46879 * 59.99699 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2430 -0.7734 6 6 4.4639 -1.5666 -1.6073 7 1 5.4124 -1.8768 -1.1943 8 6 4.2961 -1.4955 -2.9834 9 7 3.1402 -1.1176 -3.4867 10 14 5.7103 -1.9375 -4.1209 11 1 6.8927 -2.3282 -3.3119 12 1 5.3092 -3.0716 -4.9918 13 1 6.0533 -0.7638 -4.9634 14 6 3.4674 -1.2741 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4479 -1.6633 1.4238 17 6 2.2350 0.0876 2.4338 18 7 2.7615 -0.7013 3.5503 19 6 2.9754 -0.1175 4.7461 20 8 2.7322 1.0616 4.8978 21 6 3.5131 -0.9221 5.8850 22 8 3.7568 -2.1012 5.7332 23 7 3.7217 -0.3396 7.0823 24 6 4.2431 -1.1297 8.2005 25 6 4.3866 -0.2355 9.4336 26 9 3.1363 0.2897 9.7768 27 9 4.8840 -0.9902 10.5015 28 9 5.2704 0.8113 9.1502 29 1 -0.3634 0.4520 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1719 -2.0837 33 1 1.4518 -1.6704 -1.4025 34 1 3.0227 -1.0682 -4.4483 35 1 4.2426 -0.5997 1.0598 36 1 3.6650 -2.2894 1.0399 37 1 1.2619 0.4968 2.7051 38 1 2.9223 0.9030 2.2091 39 1 2.9556 -1.6439 3.4292 40 1 3.5268 0.6028 7.2038 41 1 3.5548 -1.9456 8.4209 42 1 5.2175 -1.5386 7.9332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102487095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:53 Heat of formation + Delta-G solvation = -224.565151 kcal Electronic energy + Delta-G solvation = -28988.786268 eV Core-core repulsion = 24167.593344 eV Total energy + Delta-G solvation = -4821.192923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -51.23770 -48.74562 -48.72203 -41.84345 -40.12593 -39.34650 -36.80623 -35.93235 -34.66478 -32.54987 -31.11148 -30.69621 -27.97537 -27.03932 -25.75485 -24.47102 -23.64274 -21.94684 -21.45303 -21.03451 -20.03417 -19.70546 -19.55481 -18.84063 -18.27149 -17.94104 -17.32991 -17.03116 -16.63835 -16.30299 -16.03090 -15.75891 -15.60794 -15.45107 -15.40493 -15.13391 -14.93238 -14.85758 -14.81867 -14.70438 -14.42181 -14.08205 -13.96361 -13.53427 -13.39043 -13.06525 -13.02460 -12.95376 -12.76227 -12.67398 -12.46432 -11.93778 -11.83460 -11.61771 -11.40106 -11.23384 -10.83211 -10.73641 -10.71119 -10.29281 -8.87000 -7.76977 -5.21070 0.21130 0.94456 1.46679 1.47024 1.57309 1.57423 2.01817 2.33158 2.49463 2.57427 2.90619 3.10549 3.30605 3.32170 3.62180 3.79380 3.88422 3.97587 4.05767 4.20440 4.37296 4.50916 4.62190 4.69096 4.75237 4.77400 4.85513 4.97278 5.07911 5.13439 5.23915 5.40901 5.41357 5.51705 5.64776 5.74665 5.85979 6.15728 6.33431 6.50993 6.81495 7.12370 7.79986 8.42993 9.24558 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.002087 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.062050 B =13414.902860 C =14355.146423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 H 0.071 0.929 4 C 0.160 3.840 5 N -0.629 5.629 6 C -0.237 4.237 7 H 0.078 0.922 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.135 3.865 15 C -0.092 4.092 16 H 0.095 0.905 17 C 0.141 3.859 18 N -0.686 5.686 19 C 0.509 3.491 20 O -0.540 6.540 21 C 0.525 3.475 22 O -0.525 6.525 23 N -0.696 5.696 24 C 0.076 3.924 25 C 0.456 3.544 26 F -0.181 7.181 27 F -0.172 7.172 28 F -0.183 7.183 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H -0.011 1.011 34 H 0.247 0.753 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.419 0.581 40 H 0.424 0.576 41 H 0.138 0.862 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 1.863 26.483 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 H 0.089 0.911 4 C 0.035 3.965 5 N -0.355 5.355 6 C -0.366 4.366 7 H 0.096 0.904 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.009 3.991 15 C -0.112 4.112 16 H 0.114 0.886 17 C 0.018 3.982 18 N -0.338 5.338 19 C 0.289 3.711 20 O -0.418 6.418 21 C 0.306 3.694 22 O -0.400 6.400 23 N -0.352 5.352 24 C -0.048 4.048 25 C 0.402 3.598 26 F -0.163 7.163 27 F -0.153 7.153 28 F -0.164 7.164 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.007 0.993 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.256 0.744 40 H 0.262 0.738 41 H 0.155 0.845 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.153 1.846 26.310 26.463 hybrid contribution 0.852 -0.183 -0.816 1.194 sum -1.301 1.663 25.494 25.582 Atomic orbital electron populations 1.21619 0.92667 1.01921 1.02392 1.22430 0.96779 0.98470 0.94125 0.91065 1.21792 0.83629 0.94969 0.96088 1.44821 1.10553 1.79010 1.01110 1.19465 0.91936 1.37156 0.88051 0.90393 1.25606 0.99703 1.02594 0.98114 1.70056 1.24010 1.54934 1.10728 0.85012 0.78722 0.76927 0.78687 1.19262 1.21934 1.21828 1.21532 0.95812 0.97613 0.84095 1.22368 0.96457 0.98759 0.93576 0.88642 1.21463 1.00140 0.93273 0.83340 1.45833 1.62982 1.15287 1.09681 1.19957 0.79728 0.87180 0.84263 1.90781 1.51588 1.16041 1.83381 1.19913 0.78776 0.87019 0.83714 1.90823 1.50245 1.15860 1.83116 1.45313 1.65269 1.15374 1.09258 1.22752 1.06523 0.93623 0.81935 1.20427 0.73866 0.79802 0.85721 1.93241 1.41940 1.87744 1.93346 1.93243 1.87691 1.75768 1.58636 1.93247 1.69445 1.60296 1.93420 0.90374 0.92732 0.92889 0.91284 0.99270 0.94363 0.95868 0.95740 0.88915 0.91466 0.74419 0.73755 0.84463 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.31 71.98 0.67 -2.78 16 2 C -0.10 -3.33 3.09 -9.40 -0.03 -3.36 16 3 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 4 C 0.16 7.64 5.36 86.86 0.47 8.11 16 5 N -0.63 -31.90 3.39 -691.99 -2.35 -34.25 16 6 C -0.24 -13.27 10.27 84.03 0.86 -12.40 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 9 N -0.95 -56.21 10.09 21.65 0.22 -56.00 16 10 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 14 C 0.13 5.24 6.52 86.73 0.57 5.80 16 15 C -0.09 -2.74 2.48 -9.60 -0.02 -2.77 16 16 H 0.10 2.59 8.04 -2.39 -0.02 2.57 16 17 C 0.14 3.44 4.99 86.38 0.43 3.87 16 18 N -0.69 -15.43 5.39 -464.43 -2.50 -17.94 16 19 C 0.51 11.47 7.89 87.27 0.69 12.16 16 20 O -0.54 -14.25 16.48 -3.23 -0.05 -14.30 16 21 C 0.53 10.08 7.89 87.27 0.69 10.77 16 22 O -0.53 -11.93 16.48 -3.26 -0.05 -11.98 16 23 N -0.70 -9.53 5.41 -464.42 -2.51 -12.04 16 24 C 0.08 0.68 5.64 86.38 0.49 1.17 16 25 C 0.46 4.66 3.11 71.98 0.22 4.88 16 26 F -0.18 -2.23 17.18 44.97 0.77 -1.45 16 27 F -0.17 -1.90 17.32 44.97 0.78 -1.12 16 28 F -0.18 -2.36 17.18 44.97 0.77 -1.59 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.43 8.07 -2.38 -0.02 1.41 16 32 H 0.07 3.83 5.87 -2.39 -0.01 3.82 16 33 H -0.01 -0.55 7.98 -2.39 -0.02 -0.57 16 34 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 35 H 0.02 0.91 7.77 -2.39 -0.02 0.89 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.82 8.06 -2.39 -0.02 1.81 16 39 H 0.42 8.98 7.80 -92.71 -0.72 8.26 16 40 H 0.42 5.47 7.83 -92.71 -0.73 4.75 16 41 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -69.29 366.29 2.23 -67.06 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.37 Total: 13.76 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 5.50 Total: 22.09 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -7.15 Total: -120.23 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.11 Total: -26.28 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 2.32 Total: -4.16 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.29 2.23 -67.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102487095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.501 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds