Wall clock time and date at job start Tue Mar 31 2020 20:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21517 * 120.00282 * 359.97438 * 20 19 18 22 22 C 1.48078 * 119.99672 * 179.97438 * 20 19 18 23 23 C 1.39864 * 120.93396 * 359.72060 * 22 20 19 24 24 C 1.38088 * 119.01878 * 179.71043 * 23 22 20 25 25 N 1.31841 * 120.93637 * 0.57780 * 24 23 22 26 26 C 1.31754 * 122.07582 * 359.71281 * 25 24 23 27 27 C 1.38358 * 120.87116 * 359.97438 * 26 25 24 28 28 Cl 1.73603 * 120.51772 * 179.97438 * 27 26 25 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.08001 * 120.48939 * 359.97438 * 23 22 20 43 43 H 1.07994 * 119.52496 * 180.31852 * 24 23 22 44 44 H 1.07999 * 119.56569 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3957 -1.6313 6.0778 22 6 3.3162 0.4266 7.1859 23 6 3.0728 1.8017 7.1090 24 6 3.2105 2.5711 8.2474 25 7 3.5766 2.0285 9.3919 26 6 3.8216 0.7392 9.5083 27 6 3.7022 -0.1072 8.4204 28 17 4.0279 -1.8045 8.5840 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 2.7774 2.2545 6.1740 43 1 3.0196 3.6329 8.1985 44 1 4.1194 0.3377 10.4656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103465701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:35 Heat of formation + Delta-G solvation = 17.770452 kcal Electronic energy + Delta-G solvation = -25966.474282 eV Core-core repulsion = 22138.355724 eV Total energy + Delta-G solvation = -3828.118558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06328 -39.43471 -38.16745 -36.91005 -35.40891 -33.58257 -33.01664 -31.61075 -31.03910 -30.67004 -27.17566 -25.81984 -25.16474 -24.21424 -23.68144 -22.08435 -21.16052 -19.79734 -19.30861 -18.57407 -17.32511 -16.82677 -16.65623 -15.94907 -15.83141 -15.58678 -15.19614 -14.71663 -14.63342 -14.28868 -13.98387 -13.71042 -13.54455 -13.02350 -12.85605 -12.71693 -12.33761 -12.10863 -12.05580 -11.70924 -11.56865 -11.48778 -11.14678 -11.06524 -10.85670 -10.76663 -10.63407 -10.39883 -10.12185 -9.94050 -9.86790 -9.75491 -9.71329 -9.48556 -9.33819 -9.23868 -8.64141 -6.81319 -5.64334 -3.05720 0.08467 0.35257 1.66446 2.51833 2.74169 3.23679 3.40307 3.45368 3.47094 3.81719 4.03138 4.10681 4.26109 4.49704 4.57538 4.84127 4.94352 5.04053 5.12381 5.21666 5.25359 5.44308 5.50183 5.53392 5.62975 5.72838 5.82495 5.88107 5.93475 6.08534 6.18394 6.23711 6.25535 6.31113 6.54011 6.60434 6.68058 6.81611 7.00373 7.16270 7.21657 7.55644 7.64704 7.86921 7.87531 8.37818 9.23748 9.84695 10.49942 11.39402 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002144 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.610458 B =13055.628586 C =13689.837849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.221 4.221 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.719 5.719 20 C 0.548 3.452 21 O -0.505 6.505 22 C -0.080 4.080 23 C -0.130 4.130 24 C 0.098 3.902 25 N -0.456 5.456 26 C 0.109 3.891 27 C -0.045 4.045 28 Cl -0.013 7.013 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.398 0.602 42 H 0.149 0.851 43 H 0.170 0.830 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 8.377 24.045 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.004 4.004 19 N -0.371 5.371 20 C 0.332 3.668 21 O -0.379 6.379 22 C -0.092 4.092 23 C -0.151 4.151 24 C -0.058 4.058 25 N -0.165 5.165 26 C -0.049 4.049 27 C -0.076 4.076 28 Cl 0.016 6.984 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.233 0.767 42 H 0.167 0.833 43 H 0.187 0.813 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.705 7.840 24.579 26.064 hybrid contribution 0.553 -0.468 -1.388 1.566 sum -3.152 7.372 23.191 24.538 Atomic orbital electron populations 1.21634 0.95755 1.01150 1.00553 1.22628 0.94357 0.99339 0.97086 0.91386 1.21971 0.84077 0.95879 0.94739 1.44505 1.10531 1.78937 0.99161 1.19088 0.90978 1.37627 0.87235 0.90565 1.24783 0.97291 1.02089 0.96619 1.69800 1.22430 1.53941 1.10993 0.86083 0.81252 0.77862 0.80384 1.21644 1.21669 1.20723 1.21373 0.93652 0.97213 0.86417 1.22147 0.98223 0.97606 0.93218 0.90893 1.21799 1.01510 0.98536 0.93620 1.21587 1.02611 0.93259 0.82968 1.45971 1.69396 1.12379 1.09340 1.17975 0.78498 0.87550 0.82739 1.90895 1.48087 1.14536 1.84410 1.20378 1.00378 0.94415 0.94012 1.22430 0.99108 0.92315 1.01233 1.22891 0.94616 1.01052 0.87289 1.67698 1.09559 1.12134 1.27116 1.22895 0.95974 0.88170 0.97859 1.22313 1.01212 0.89180 0.94857 1.98448 1.92736 1.09684 1.97548 0.93071 0.93888 0.92782 0.87746 0.97069 0.93788 0.96265 0.96022 0.91126 0.91508 0.91090 0.90599 0.76668 0.83348 0.81258 0.81118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.30 37.16 0.35 -1.62 16 2 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.16 3.77 5.36 -2.53 -0.01 3.76 16 5 N -0.61 -15.50 3.39 -170.06 -0.58 -16.07 16 6 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 9 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.14 2.85 6.25 -3.06 -0.02 2.83 16 15 C -0.09 -1.49 2.38 -88.77 -0.21 -1.70 16 16 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 17 C -0.12 -1.38 4.74 -26.73 -0.13 -1.50 16 18 C 0.12 1.39 5.56 -4.04 -0.02 1.37 16 19 N -0.72 -6.99 5.51 -61.18 -0.34 -7.33 16 20 C 0.55 6.40 7.79 -12.22 -0.10 6.31 16 21 O -0.50 -7.67 14.17 5.35 0.08 -7.60 16 22 C -0.08 -0.75 5.91 -104.62 -0.62 -1.37 16 23 C -0.13 -0.82 9.61 -39.03 -0.38 -1.19 16 24 C 0.10 0.60 11.17 -17.60 -0.20 0.40 16 25 N -0.46 -3.72 10.33 -13.28 -0.14 -3.85 16 26 C 0.11 0.87 10.99 -17.54 -0.19 0.68 16 27 C -0.05 -0.44 6.38 -38.91 -0.25 -0.69 16 28 Cl -0.01 -0.15 26.24 -51.86 -1.36 -1.51 16 29 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.82 5.87 -51.93 -0.31 2.52 16 33 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 36 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 37 H 0.07 0.84 7.95 -51.92 -0.41 0.43 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 41 H 0.40 2.62 6.61 -40.82 -0.27 2.35 16 42 H 0.15 0.48 6.54 -52.49 -0.34 0.14 16 43 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -33.46 372.43 -9.79 -43.25 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.31 Total: -1.51 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.30 Total: -1.82 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.49 Total: -53.59 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.08 Total: -7.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.36 Total: -1.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.46 -9.79 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103465701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.022 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds