Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21517 * 120.00282 * 359.97438 * 20 19 18 22 22 C 1.48078 * 119.99672 * 179.97438 * 20 19 18 23 23 C 1.39864 * 120.93396 * 359.72060 * 22 20 19 24 24 C 1.38088 * 119.01878 * 179.71043 * 23 22 20 25 25 N 1.31841 * 120.93637 * 0.57780 * 24 23 22 26 26 C 1.31754 * 122.07582 * 359.71281 * 25 24 23 27 27 C 1.38358 * 120.87116 * 359.97438 * 26 25 24 28 28 Cl 1.73603 * 120.51772 * 179.97438 * 27 26 25 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.08001 * 120.48939 * 359.97438 * 23 22 20 43 43 H 1.07994 * 119.52496 * 180.31852 * 24 23 22 44 44 H 1.07999 * 119.56569 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3957 -1.6313 6.0778 22 6 3.3162 0.4266 7.1859 23 6 3.0728 1.8017 7.1090 24 6 3.2105 2.5711 8.2474 25 7 3.5766 2.0285 9.3919 26 6 3.8216 0.7392 9.5083 27 6 3.7022 -0.1072 8.4204 28 17 4.0279 -1.8045 8.5840 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 2.7774 2.2545 6.1740 43 1 3.0196 3.6329 8.1985 44 1 4.1194 0.3377 10.4656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103465701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = -4.020117 kcal Electronic energy + Delta-G solvation = -25967.419192 eV Core-core repulsion = 22138.355724 eV Total energy + Delta-G solvation = -3829.063468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.72629 -40.28868 -39.63863 -37.63357 -36.52404 -35.08412 -33.96184 -32.53691 -32.31297 -32.02156 -28.60650 -27.49410 -26.22127 -25.26788 -24.50245 -23.40662 -22.00149 -21.39749 -20.68609 -19.34368 -18.87172 -17.96605 -17.28795 -17.11676 -16.68083 -16.58917 -16.34264 -16.06093 -15.56837 -15.38677 -15.13936 -14.79448 -14.66520 -14.54153 -14.15818 -13.70269 -13.49475 -13.35920 -13.26210 -13.03598 -12.85209 -12.77151 -12.72771 -12.42032 -12.27833 -12.18879 -11.94734 -11.77287 -11.44075 -11.35065 -11.24129 -11.03959 -10.98894 -10.74486 -10.47516 -10.17438 -10.03857 -8.87153 -7.77534 -5.21883 -0.56358 -0.17414 0.98612 1.44518 1.46345 1.55094 1.74923 1.93019 2.48633 2.62869 3.30729 3.34645 3.40864 3.53812 3.69178 3.72074 3.75337 3.92745 4.06764 4.08954 4.26602 4.35643 4.49459 4.53462 4.56688 4.64795 4.73344 4.76811 4.81059 4.85145 5.02680 5.04045 5.13775 5.20001 5.28891 5.34300 5.37582 5.42186 5.46924 5.56392 5.78301 5.86650 6.33058 6.41189 6.68378 7.07839 7.11936 7.80111 8.43692 9.23611 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002144 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.610458 B =13055.628586 C =13689.837849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.270 1.270 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.076 0.924 17 C -0.100 4.100 18 C 0.125 3.875 19 N -0.703 5.703 20 C 0.545 3.455 21 O -0.549 6.549 22 C -0.097 4.097 23 C -0.115 4.115 24 C 0.103 3.897 25 N -0.471 5.471 26 C 0.108 3.892 27 C -0.063 4.063 28 Cl -0.038 7.038 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.069 0.931 33 H -0.020 1.020 34 H 0.247 0.753 35 H 0.009 0.991 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.417 0.583 42 H 0.184 0.816 43 H 0.207 0.793 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 11.047 25.564 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.195 1.195 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.094 0.906 17 C -0.138 4.138 18 C 0.002 3.998 19 N -0.356 5.356 20 C 0.331 3.669 21 O -0.427 6.427 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.053 4.053 25 N -0.180 5.180 26 C -0.049 4.049 27 C -0.093 4.093 28 Cl -0.008 7.008 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.087 0.913 33 H -0.002 1.002 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.255 0.745 42 H 0.202 0.798 43 H 0.224 0.776 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.416 10.545 26.132 28.524 hybrid contribution 0.780 -1.250 -1.853 2.367 sum -3.636 9.296 24.279 26.251 Atomic orbital electron populations 1.21599 0.92984 1.01606 1.02265 1.22463 0.96485 0.98488 0.94455 0.90766 1.21802 0.83532 0.94820 0.96534 1.44865 1.10537 1.78931 1.01257 1.19439 0.91854 1.37447 0.88175 0.90642 1.25618 0.99785 1.02545 0.98058 1.70066 1.24088 1.54828 1.10759 0.85079 0.78802 0.77253 0.78210 1.21580 1.21642 1.19511 1.21587 0.96815 0.96925 0.83866 1.22050 0.95083 0.98265 0.94399 0.90594 1.21646 1.03645 0.97474 0.91037 1.21339 1.01185 0.93493 0.83788 1.45735 1.68595 1.13121 1.08143 1.18351 0.77664 0.87309 0.83608 1.90877 1.50076 1.16547 1.85152 1.20352 1.02060 0.95612 0.92898 1.22797 0.97277 0.90618 1.02845 1.23558 0.92710 1.02648 0.86395 1.67781 1.10030 1.11901 1.28335 1.23101 0.95647 0.88139 0.98042 1.22469 1.02772 0.88267 0.95820 1.98433 1.93075 1.11705 1.97637 0.93507 0.89859 0.93158 0.91340 1.00155 0.94350 0.97332 0.95502 0.90445 0.87991 0.91617 0.93090 0.74454 0.79834 0.77601 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.30 71.98 0.67 -2.73 16 2 C -0.10 -3.37 3.09 -9.40 -0.03 -3.40 16 3 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 4 C 0.16 7.75 5.36 86.86 0.47 8.21 16 5 N -0.63 -33.04 3.39 -691.95 -2.35 -35.39 16 6 C -0.24 -13.81 10.27 84.04 0.86 -12.95 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 9 N -0.95 -57.09 10.09 21.65 0.22 -56.87 16 10 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 C 0.13 5.46 6.25 86.73 0.54 6.00 16 15 C -0.08 -2.39 2.38 -9.60 -0.02 -2.41 16 16 H 0.08 2.29 8.02 -2.39 -0.02 2.27 16 17 C -0.10 -2.00 4.74 30.59 0.14 -1.86 16 18 C 0.13 2.70 5.56 86.38 0.48 3.18 16 19 N -0.70 -11.72 5.51 -465.75 -2.57 -14.28 16 20 C 0.54 12.02 7.79 86.86 0.68 12.70 16 21 O -0.55 -16.83 14.17 -3.77 -0.05 -16.89 16 22 C -0.10 -1.66 5.91 -19.86 -0.12 -1.78 16 23 C -0.12 -1.00 9.61 22.63 0.22 -0.78 16 24 C 0.10 0.86 11.17 84.66 0.95 1.80 16 25 N -0.47 -6.46 10.33 -195.91 -2.02 -8.49 16 26 C 0.11 1.59 10.99 84.73 0.93 2.52 16 27 C -0.06 -1.17 6.38 22.71 0.14 -1.03 16 28 Cl -0.04 -0.85 26.24 -2.72 -0.07 -0.92 16 29 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 3.85 5.87 -2.39 -0.01 3.84 16 33 H -0.02 -1.05 8.04 -2.39 -0.02 -1.07 16 34 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 35 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 37 H 0.08 1.52 7.95 -2.38 -0.02 1.50 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.37 7.69 -2.39 -0.02 1.35 16 41 H 0.42 3.61 6.61 -92.71 -0.61 3.00 16 42 H 0.18 0.17 6.54 -2.91 -0.02 0.15 16 43 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -77.77 372.43 1.96 -75.81 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.40 Total: 4.53 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.38 Total: 4.05 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.72 Total: -115.03 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.89 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.92 kcal Total: -77.77 1.96 -75.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103465701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.791 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds