Wall clock time and date at job start Tue Mar 31 2020 20:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21550 * 120.00224 * 359.97438 * 20 19 18 22 22 C 1.47847 * 119.99853 * 179.97438 * 20 19 18 23 23 C 1.39561 * 120.55269 * 359.97438 * 22 20 19 24 24 N 1.31661 * 120.59510 * 179.97438 * 23 22 20 25 25 C 1.31944 * 121.89459 * 0.02562 * 24 23 22 26 26 C 1.38426 * 121.06176 * 0.02562 * 25 24 23 27 27 Cl 1.73605 * 120.36346 * 180.02562 * 26 25 24 28 28 C 1.38515 * 119.27817 * 359.71375 * 26 25 24 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.08003 * 119.70415 * 359.97438 * 23 22 20 43 43 H 1.08000 * 119.46798 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.85880 * 180.28073 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3957 -1.6316 6.0778 22 6 3.3160 0.4252 7.1840 23 6 3.0660 1.7956 7.0995 24 7 3.1908 2.5662 8.1598 25 6 3.5532 2.0840 9.3333 26 6 3.8202 0.7360 9.5000 27 17 4.2951 0.1208 11.0524 28 6 3.6980 -0.1179 8.4162 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 2.7676 2.2280 6.1559 43 1 3.6429 2.7517 10.1773 44 1 3.8957 -1.1747 8.5185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103532736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:30 Heat of formation + Delta-G solvation = 8.188717 kcal Electronic energy + Delta-G solvation = -25671.869745 eV Core-core repulsion = 21843.335692 eV Total energy + Delta-G solvation = -3828.534053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14915 -39.46208 -38.16770 -37.21263 -35.48099 -33.40489 -33.09358 -32.12857 -30.89579 -30.63163 -27.14284 -25.80140 -25.08571 -24.25783 -23.80419 -22.08344 -21.15725 -19.78133 -19.29908 -18.55846 -17.52518 -17.13177 -16.82743 -15.92332 -15.82941 -15.74797 -15.20725 -14.77344 -14.33645 -14.15880 -13.81675 -13.75112 -13.56318 -13.20569 -13.00755 -12.84220 -12.61790 -12.12376 -12.07282 -11.80605 -11.70298 -11.52204 -11.15407 -11.06490 -10.88224 -10.77199 -10.73507 -10.43529 -10.11936 -10.03570 -9.89742 -9.83514 -9.72850 -9.64214 -9.34232 -9.28004 -8.64338 -6.81007 -5.64270 -3.05610 -0.04204 0.40727 1.38759 2.38664 2.76989 3.20820 3.39930 3.45694 3.48052 3.65727 4.04111 4.15543 4.21142 4.44974 4.49749 4.66773 4.87490 5.04121 5.20237 5.25351 5.32386 5.44310 5.50211 5.53668 5.62994 5.69384 5.73329 5.87705 5.93553 6.07880 6.18186 6.23881 6.25416 6.31396 6.54639 6.60969 6.68203 6.81976 7.00642 7.08933 7.15063 7.56105 7.65315 7.83184 7.87868 8.38036 9.23896 9.84842 10.50031 11.39498 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.001880 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.997874 B =14893.174127 C =15579.225970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.922 5.922 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.117 3.883 19 N -0.719 5.719 20 C 0.560 3.440 21 O -0.527 6.527 22 C -0.170 4.170 23 C 0.138 3.862 24 N -0.469 5.469 25 C 0.135 3.865 26 C -0.098 4.098 27 Cl -0.044 7.044 28 C -0.009 4.009 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.399 0.601 42 H 0.168 0.832 43 H 0.171 0.829 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 7.811 25.732 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.005 4.005 19 N -0.370 5.370 20 C 0.345 3.655 21 O -0.404 6.404 22 C -0.175 4.175 23 C -0.021 4.021 24 N -0.177 5.177 25 C -0.022 4.022 26 C -0.127 4.127 27 Cl -0.016 7.016 28 C -0.036 4.036 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.185 0.815 43 H 0.189 0.811 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.472 7.749 25.593 26.965 hybrid contribution 0.848 -0.813 -0.397 1.240 sum -2.624 6.935 25.195 26.264 Atomic orbital electron populations 1.21635 0.95749 1.01143 1.00577 1.22631 0.94369 0.99361 0.97072 0.91357 1.21970 0.84071 0.95876 0.94747 1.44512 1.10532 1.78924 0.99166 1.19133 0.90976 1.37501 0.87226 0.90504 1.24790 0.97295 1.02137 0.96640 1.69812 1.22373 1.54033 1.10910 0.86008 0.81163 0.77594 0.80813 1.20547 1.21785 1.21775 1.21378 0.93669 0.97211 0.86426 1.22148 0.98217 0.97608 0.93229 0.90885 1.21807 1.01600 0.98546 0.93583 1.21607 1.02647 0.93284 0.83008 1.45986 1.69203 1.12427 1.09408 1.17875 0.77622 0.87334 0.82650 1.90827 1.49682 1.15087 1.84842 1.21077 1.05798 0.95492 0.95173 1.23170 0.92168 0.89033 0.97688 1.67880 1.12687 1.38312 0.98821 1.23060 0.91842 0.91485 0.95856 1.22036 1.06096 0.95365 0.89166 1.98410 1.90161 1.87486 1.25504 1.21705 0.90890 1.01511 0.89456 0.93079 0.93861 0.92783 0.87750 0.97068 0.93841 0.96266 0.95998 0.91051 0.91431 0.91050 0.90562 0.76543 0.81475 0.81145 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.30 37.16 0.35 -1.62 16 2 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.16 3.76 5.36 -2.53 -0.01 3.75 16 5 N -0.61 -15.43 3.39 -170.06 -0.58 -16.01 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 10 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.14 2.83 6.25 -3.06 -0.02 2.81 16 15 C -0.09 -1.48 2.38 -88.77 -0.21 -1.69 16 16 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 17 C -0.12 -1.37 4.74 -26.73 -0.13 -1.50 16 18 C 0.12 1.35 5.56 -4.04 -0.02 1.33 16 19 N -0.72 -6.75 5.51 -61.25 -0.34 -7.09 16 20 C 0.56 6.24 7.78 -12.33 -0.10 6.14 16 21 O -0.53 -7.92 16.42 5.32 0.09 -7.83 16 22 C -0.17 -1.50 5.89 -104.83 -0.62 -2.12 16 23 C 0.14 1.00 10.71 -17.13 -0.18 0.82 16 24 N -0.47 -3.76 10.34 -12.88 -0.13 -3.89 16 25 C 0.14 0.92 10.97 -17.43 -0.19 0.73 16 26 C -0.10 -0.72 6.34 -39.41 -0.25 -0.97 16 27 Cl -0.04 -0.30 28.99 -51.86 -1.50 -1.80 16 28 C -0.01 -0.07 9.52 -38.83 -0.37 -0.44 16 29 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.82 5.87 -51.93 -0.31 2.51 16 33 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 37 H 0.07 0.84 7.95 -51.92 -0.41 0.43 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 41 H 0.40 2.52 6.54 -40.82 -0.27 2.25 16 42 H 0.17 0.75 6.42 -52.48 -0.34 0.41 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.16 1.37 7.74 -52.49 -0.41 0.97 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -32.89 376.29 -9.82 -42.70 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.28 Total: -0.76 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.28 Total: -1.83 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.49 Total: -53.30 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.89 -9.82 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103532736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.894 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds