Wall clock time and date at job start Tue Mar 31 2020 20:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21550 * 120.00224 * 359.97438 * 20 19 18 22 22 C 1.47847 * 119.99853 * 179.97438 * 20 19 18 23 23 C 1.39561 * 120.55269 * 359.97438 * 22 20 19 24 24 N 1.31661 * 120.59510 * 179.97438 * 23 22 20 25 25 C 1.31944 * 121.89459 * 0.02562 * 24 23 22 26 26 C 1.38426 * 121.06176 * 0.02562 * 25 24 23 27 27 Cl 1.73605 * 120.36346 * 180.02562 * 26 25 24 28 28 C 1.38515 * 119.27817 * 359.71375 * 26 25 24 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.08003 * 119.70415 * 359.97438 * 23 22 20 43 43 H 1.08000 * 119.46798 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.85880 * 180.28073 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3957 -1.6316 6.0778 22 6 3.3160 0.4252 7.1840 23 6 3.0660 1.7956 7.0995 24 7 3.1908 2.5662 8.1598 25 6 3.5532 2.0840 9.3333 26 6 3.8202 0.7360 9.5000 27 17 4.2951 0.1208 11.0524 28 6 3.6980 -0.1179 8.4162 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 2.7676 2.2280 6.1559 43 1 3.6429 2.7517 10.1773 44 1 3.8957 -1.1747 8.5185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103532736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:29 Heat of formation + Delta-G solvation = -12.788679 kcal Electronic energy + Delta-G solvation = -25672.779393 eV Core-core repulsion = 21843.335692 eV Total energy + Delta-G solvation = -3829.443701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.81507 -40.31382 -39.64003 -37.75541 -36.58234 -35.06631 -33.78707 -32.99412 -32.52248 -31.81469 -28.56553 -27.47338 -26.15821 -25.16405 -24.74194 -23.41531 -22.00027 -21.38293 -20.67281 -19.30317 -18.86863 -18.14846 -17.73162 -17.13415 -16.68698 -16.56409 -16.46796 -16.05561 -15.58235 -15.42410 -14.94014 -14.79529 -14.55067 -14.40780 -14.15321 -13.75452 -13.65278 -13.49341 -13.35866 -13.15973 -12.85071 -12.77905 -12.72872 -12.39189 -12.34112 -12.17875 -11.93279 -11.79544 -11.60417 -11.37162 -11.23819 -11.08807 -10.98003 -10.75076 -10.67531 -10.29031 -10.07586 -8.86255 -7.77067 -5.21249 -0.64373 -0.18633 0.83807 1.44997 1.45799 1.56231 1.63665 1.96845 2.48929 2.56604 3.13636 3.31459 3.49776 3.52502 3.60966 3.71920 3.76132 3.85594 3.94074 4.09303 4.13071 4.30375 4.36857 4.54147 4.65549 4.67385 4.72158 4.77169 4.81791 4.86083 5.03682 5.04924 5.14271 5.15945 5.20923 5.29582 5.36069 5.43074 5.47889 5.57504 5.79130 5.87449 6.33729 6.38793 6.54774 7.05110 7.12542 7.80785 8.44334 9.24241 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.001880 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.997874 B =14893.174127 C =15579.225970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.076 0.924 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.289 1.289 14 C 0.132 3.868 15 C -0.078 4.078 16 H 0.077 0.923 17 C -0.102 4.102 18 C 0.123 3.877 19 N -0.704 5.704 20 C 0.561 3.439 21 O -0.575 6.575 22 C -0.181 4.181 23 C 0.148 3.852 24 N -0.482 5.482 25 C 0.143 3.857 26 C -0.100 4.100 27 Cl -0.040 7.040 28 C -0.017 4.017 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.068 0.932 33 H -0.019 1.019 34 H 0.246 0.754 35 H 0.010 0.990 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.417 0.583 42 H 0.197 0.803 43 H 0.197 0.803 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 9.800 27.660 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.092 0.908 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.367 4.367 7 H 0.094 0.906 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.193 1.193 12 H -0.220 1.220 13 H -0.215 1.215 14 C 0.007 3.993 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.140 4.140 18 C 0.000 4.000 19 N -0.356 5.356 20 C 0.348 3.652 21 O -0.455 6.455 22 C -0.187 4.187 23 C -0.010 4.010 24 N -0.190 5.190 25 C -0.014 4.014 26 C -0.129 4.129 27 Cl -0.011 7.011 28 C -0.044 4.044 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.086 0.914 33 H -0.001 1.001 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.256 0.744 42 H 0.213 0.787 43 H 0.213 0.787 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.980 9.779 27.551 29.505 hybrid contribution 1.032 -1.449 -0.945 2.015 sum -2.948 8.329 26.606 28.035 Atomic orbital electron populations 1.21599 0.93001 1.01628 1.02235 1.22469 0.96486 0.98492 0.94535 0.90838 1.21794 0.83555 0.94812 0.96496 1.44869 1.10515 1.78907 1.01285 1.19478 0.91840 1.37223 0.88140 0.90570 1.25628 0.99784 1.02663 0.98104 1.70076 1.24036 1.54965 1.10692 0.85004 0.78648 0.76996 0.78658 1.19335 1.22009 1.21546 1.21599 0.96813 0.97008 0.83838 1.22051 0.95120 0.98272 0.94345 0.90473 1.21660 1.03691 0.97513 0.91095 1.21375 1.01354 0.93514 0.83765 1.45766 1.68359 1.13159 1.08279 1.18188 0.76660 0.86931 0.83442 1.90807 1.51913 1.17186 1.85599 1.20888 1.07622 0.95946 0.94224 1.23558 0.90677 0.88117 0.98655 1.67990 1.13367 1.38413 0.99271 1.23494 0.90132 0.91498 0.96316 1.22034 1.06324 0.95519 0.89033 1.98413 1.90129 1.87528 1.25067 1.21751 0.91116 1.01480 0.90094 0.93436 0.89889 0.93213 0.91401 1.00113 0.94389 0.97180 0.95454 0.90443 0.87992 0.91407 0.92901 0.74396 0.78664 0.78651 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.30 71.98 0.67 -2.74 16 2 C -0.10 -3.41 3.09 -9.40 -0.03 -3.44 16 3 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 4 C 0.16 7.76 5.36 86.86 0.47 8.22 16 5 N -0.63 -32.91 3.39 -691.95 -2.35 -35.26 16 6 C -0.24 -13.63 10.27 84.04 0.86 -12.77 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 9 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 10 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 C 0.13 5.39 6.25 86.73 0.54 5.94 16 15 C -0.08 -2.37 2.38 -9.60 -0.02 -2.39 16 16 H 0.08 2.30 8.02 -2.39 -0.02 2.28 16 17 C -0.10 -2.03 4.74 30.59 0.14 -1.88 16 18 C 0.12 2.60 5.56 86.38 0.48 3.08 16 19 N -0.70 -11.49 5.51 -465.97 -2.57 -14.06 16 20 C 0.56 11.87 7.78 86.79 0.68 12.54 16 21 O -0.57 -17.38 16.42 -3.87 -0.06 -17.44 16 22 C -0.18 -2.93 5.89 -20.00 -0.12 -3.05 16 23 C 0.15 1.74 10.71 85.04 0.91 2.65 16 24 N -0.48 -6.36 10.34 -194.67 -2.01 -8.37 16 25 C 0.14 1.60 10.97 84.72 0.93 2.53 16 26 C -0.10 -1.32 6.34 22.38 0.14 -1.18 16 27 Cl -0.04 -0.49 28.99 -2.72 -0.08 -0.57 16 28 C -0.02 -0.29 9.52 22.75 0.22 -0.07 16 29 H 0.05 1.31 8.11 -2.39 -0.02 1.29 16 30 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 3.83 5.87 -2.39 -0.01 3.81 16 33 H -0.02 -1.02 8.04 -2.39 -0.02 -1.04 16 34 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.03 1.09 7.70 -2.39 -0.02 1.07 16 37 H 0.08 1.52 7.95 -2.38 -0.02 1.51 16 38 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.39 7.69 -2.39 -0.02 1.37 16 41 H 0.42 3.66 6.54 -92.71 -0.61 3.06 16 42 H 0.20 0.97 6.42 -2.91 -0.02 0.95 16 43 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.15 2.67 7.74 -2.91 -0.02 2.65 16 Total: -1.00 -75.09 376.29 1.92 -73.16 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.41 Total: 7.08 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.34 Total: 3.90 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.71 Total: -114.60 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.06 Total: -17.44 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -75.09 1.92 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103532736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.376 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds