Wall clock time and date at job start Tue Mar 31 2020 20:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.91086 * 2 1 4 4 C 1.54909 * 111.00484 * 236.09696 * 2 1 3 5 5 N 1.47428 * 104.83029 * 204.91819 * 4 2 1 6 6 C 1.34776 * 125.64536 * 204.09141 * 5 4 2 7 7 O 1.21549 * 120.00109 * 174.11385 * 6 5 4 8 8 C 1.47846 * 120.00053 * 354.11746 * 6 5 4 9 9 C 1.39563 * 120.55358 * 155.63944 * 8 6 5 10 10 N 1.31665 * 120.59595 * 179.73073 * 9 8 6 11 11 C 1.31950 * 121.88988 * 0.58167 * 10 9 8 12 12 C 1.38427 * 121.06337 * 359.68307 * 11 10 9 13 13 Cl 1.73597 * 120.36025 * 180.02562 * 12 11 10 14 14 C 1.38510 * 119.27669 * 0.02562 * 12 11 10 15 15 C 1.47015 * 108.70418 * 24.12724 * 5 4 2 16 16 C 1.54330 * 107.27527 * 358.94335 * 15 5 4 17 17 H 1.08996 * 110.72296 * 96.34136 * 16 15 5 18 18 C 1.53000 * 110.71932 * 219.44646 * 16 15 5 19 19 C 1.53002 * 109.47012 * 293.53831 * 18 16 15 20 20 N 1.46495 * 109.47148 * 180.02562 * 19 18 16 21 21 C 1.36936 * 120.00125 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99764 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00160 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00041 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47090 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47010 * 120.00426 * 25 23 21 28 28 H 1.48496 * 109.47263 * 240.00492 * 25 23 21 29 29 H 1.09003 * 109.47077 * 296.09836 * 1 2 3 30 30 H 1.09003 * 109.47506 * 56.10085 * 1 2 3 31 31 H 1.09000 * 109.47408 * 176.10097 * 1 2 3 32 32 H 1.09000 * 110.36664 * 86.07743 * 4 2 1 33 33 H 1.09003 * 110.45987 * 323.80292 * 4 2 1 34 34 H 1.08001 * 119.70103 * 0.02562 * 9 8 6 35 35 H 1.08003 * 119.46741 * 179.70495 * 11 10 9 36 36 H 1.08000 * 120.85890 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.88368 * 239.52412 * 15 5 4 38 38 H 1.08997 * 110.01291 * 118.43246 * 15 5 4 39 39 H 1.09003 * 109.46578 * 173.54252 * 18 16 15 40 40 H 1.08996 * 109.47545 * 53.54476 * 18 16 15 41 41 H 1.08996 * 109.47492 * 300.00677 * 19 18 16 42 42 H 1.09003 * 109.46656 * 60.00454 * 19 18 16 43 43 H 0.97002 * 120.00242 * 0.02562 * 20 19 18 44 44 H 0.97000 * 120.00086 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4272 -1.2431 -0.7732 6 6 4.4477 -1.5616 -1.5939 7 8 5.5451 -1.8065 -1.1323 8 6 4.2323 -1.6132 -3.0557 9 6 5.2999 -1.4354 -3.9368 10 7 5.1100 -1.4863 -5.2387 11 6 3.9164 -1.6936 -5.7614 12 6 2.8053 -1.8741 -4.9557 13 17 1.2434 -2.1462 -5.6629 14 6 2.9534 -1.8352 -3.5791 15 6 3.4674 -1.2741 0.6961 16 6 2.0861 -0.8079 1.2023 17 1 1.4478 -1.6632 1.4240 18 6 2.2349 0.0877 2.4339 19 6 2.7847 -0.7361 3.6000 20 7 2.9267 0.1212 4.7794 21 6 3.4049 -0.4006 5.9517 22 1 3.6778 -1.4441 6.0066 23 6 3.5400 0.4119 7.0690 24 7 3.2078 1.6838 7.0019 25 14 4.1916 -0.3000 8.6684 26 1 4.4897 -1.7429 8.4828 27 1 5.4330 0.4151 9.0590 28 1 3.1708 -0.1382 9.7346 29 1 -0.3633 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1720 -2.0837 33 1 1.4525 -1.6704 -1.4043 34 1 6.2917 -1.2591 -3.5472 35 1 3.8044 -1.7233 -6.8352 36 1 2.1040 -1.9732 -2.9265 37 1 4.2425 -0.5997 1.0600 38 1 3.6662 -2.2883 1.0424 39 1 1.2618 0.4970 2.7051 40 1 2.9222 0.9032 2.2092 41 1 2.0974 -1.5517 3.8247 42 1 3.7579 -1.1454 3.3287 43 1 2.6820 1.0585 4.7300 44 1 3.3018 2.2514 7.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104792378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:43 Heat of formation + Delta-G solvation = 6.404444 kcal Electronic energy + Delta-G solvation = -26132.521381 eV Core-core repulsion = 22303.909956 eV Total energy + Delta-G solvation = -3828.611425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30531 -39.93181 -38.18848 -37.20600 -35.28927 -33.88526 -32.84010 -32.13697 -31.71797 -30.20509 -27.45384 -26.89011 -25.21977 -24.28863 -23.75163 -22.48875 -20.87528 -20.56725 -19.94013 -17.88984 -17.60354 -17.17357 -17.11088 -16.56768 -15.89747 -15.35049 -14.95905 -14.75571 -14.53404 -14.48190 -14.23488 -13.58649 -13.49042 -13.29092 -13.10494 -13.06304 -12.84670 -12.71315 -12.59651 -12.34599 -11.87546 -11.80520 -11.53641 -11.24343 -11.07146 -10.87392 -10.69321 -10.67220 -10.51998 -10.40735 -10.30042 -9.98608 -9.95930 -9.67491 -9.58470 -8.92116 -8.87232 -6.91876 -5.76406 -3.04997 0.02750 0.39429 1.37905 2.36333 2.55599 3.16809 3.43948 3.49702 3.51900 3.73619 3.94709 3.97938 4.14648 4.22656 4.36287 4.47742 4.62743 4.67241 4.72381 4.91697 5.03388 5.11814 5.19547 5.23884 5.29245 5.38766 5.44846 5.56417 5.64079 5.68592 5.76555 5.79786 5.92732 5.93283 5.95888 6.07400 6.22269 6.33373 6.34718 6.81399 6.85632 7.10342 7.20697 7.71193 7.76466 8.42766 9.53858 10.11858 10.46049 11.46662 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002139 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.931143 B =13086.713149 C =14031.925707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.094 3.906 5 N -0.610 5.610 6 C 0.576 3.424 7 O -0.522 6.522 8 C -0.165 4.165 9 C 0.162 3.838 10 N -0.469 5.469 11 C 0.134 3.866 12 C -0.098 4.098 13 Cl -0.046 7.046 14 C -0.046 4.046 15 C 0.111 3.889 16 C -0.089 4.089 17 H 0.088 0.912 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.177 0.823 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -5.933 -29.053 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.028 4.028 5 N -0.343 5.343 6 C 0.363 3.637 7 O -0.399 6.399 8 C -0.170 4.170 9 C 0.004 3.996 10 N -0.177 5.177 11 C -0.024 4.024 12 C -0.127 4.127 13 Cl -0.017 7.017 14 C -0.072 4.072 15 C -0.011 4.011 16 C -0.108 4.108 17 H 0.106 0.894 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.194 0.806 35 H 0.188 0.812 36 H 0.178 0.822 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.060 -6.131 -29.342 30.400 hybrid contribution -0.675 -0.192 1.395 1.562 sum -5.734 -6.323 -27.946 29.221 Atomic orbital electron populations 1.21710 0.93330 1.02205 1.02659 1.22465 0.96520 0.99672 0.93380 0.89175 1.22794 0.83258 0.98181 0.98603 1.48380 1.12020 1.66072 1.07807 1.17546 0.83530 0.77811 0.84815 1.90851 1.23137 1.49288 1.76649 1.21010 0.94494 1.06308 0.95215 1.23187 0.99275 0.89704 0.87436 1.67996 1.23065 1.12820 1.13840 1.23093 0.86206 0.92055 1.01031 1.22018 0.89301 1.07342 0.94080 1.98408 1.25041 1.94686 1.83602 1.22262 0.97952 0.93096 0.93917 1.22213 0.98781 1.02574 0.77513 1.22310 0.94829 0.98913 0.94793 0.89352 1.21737 1.02027 0.98085 0.93477 1.20684 0.96986 0.93274 0.86710 1.42367 1.78542 1.09649 1.07267 1.19281 1.34769 0.94507 0.88348 0.91139 1.24751 1.02380 0.95764 0.98254 1.69669 1.54530 1.04568 1.29539 0.86112 0.78186 0.78056 0.83841 1.20539 1.21846 1.21870 0.91325 0.92403 0.92307 0.90412 0.90768 0.80601 0.81227 0.82214 0.90178 0.90795 0.91190 0.91606 0.96439 0.96292 0.78330 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.31 37.16 0.35 -0.65 16 2 C -0.10 -0.86 3.09 -88.47 -0.27 -1.14 16 3 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 4 C 0.09 0.73 4.47 -2.53 -0.01 0.71 16 5 N -0.61 -6.65 3.33 -171.63 -0.57 -7.22 16 6 C 0.58 7.06 7.66 -12.33 -0.09 6.97 16 7 O -0.52 -8.35 16.96 5.32 0.09 -8.26 16 8 C -0.16 -1.58 5.68 -104.83 -0.60 -2.18 16 9 C 0.16 1.54 10.76 -17.13 -0.18 1.35 16 10 N -0.47 -4.27 10.34 -12.88 -0.13 -4.40 16 11 C 0.13 0.95 10.97 -17.43 -0.19 0.76 16 12 C -0.10 -0.68 6.34 -39.41 -0.25 -0.93 16 13 Cl -0.05 -0.28 28.98 -51.86 -1.50 -1.78 16 14 C -0.05 -0.35 8.00 -38.83 -0.31 -0.66 16 15 C 0.11 1.37 5.62 -3.06 -0.02 1.35 16 16 C -0.09 -0.98 2.45 -88.78 -0.22 -1.19 16 17 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 18 C -0.12 -1.68 4.72 -26.73 -0.13 -1.80 16 19 C 0.15 2.93 6.11 -4.04 -0.02 2.91 16 20 N -0.73 -18.60 5.60 -59.91 -0.34 -18.94 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.08 0.52 6.83 -51.93 -0.35 0.16 16 33 H 0.07 0.45 6.69 -51.93 -0.35 0.10 16 34 H 0.18 1.57 7.85 -52.49 -0.41 1.16 16 35 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.16 0.97 4.68 -52.49 -0.25 0.73 16 37 H 0.08 1.15 7.76 -51.93 -0.40 0.75 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 43 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -33.36 375.91 -9.50 -42.86 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.22 Total: 4.12 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.20 Total: -1.93 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.32 Total: -58.26 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.36 -9.50 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104792378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.264 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds