Wall clock time and date at job start Tue Mar 31 2020 20:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.91086 * 2 1 4 4 C 1.54909 * 111.00484 * 236.09696 * 2 1 3 5 5 N 1.47428 * 104.83029 * 204.91819 * 4 2 1 6 6 C 1.34776 * 125.64536 * 204.09141 * 5 4 2 7 7 O 1.21549 * 120.00109 * 174.11385 * 6 5 4 8 8 C 1.47846 * 120.00053 * 354.11746 * 6 5 4 9 9 C 1.39563 * 120.55358 * 155.63944 * 8 6 5 10 10 N 1.31665 * 120.59595 * 179.73073 * 9 8 6 11 11 C 1.31950 * 121.88988 * 0.58167 * 10 9 8 12 12 C 1.38427 * 121.06337 * 359.68307 * 11 10 9 13 13 Cl 1.73597 * 120.36025 * 180.02562 * 12 11 10 14 14 C 1.38510 * 119.27669 * 0.02562 * 12 11 10 15 15 C 1.47015 * 108.70418 * 24.12724 * 5 4 2 16 16 C 1.54330 * 107.27527 * 358.94335 * 15 5 4 17 17 H 1.08996 * 110.72296 * 96.34136 * 16 15 5 18 18 C 1.53000 * 110.71932 * 219.44646 * 16 15 5 19 19 C 1.53002 * 109.47012 * 293.53831 * 18 16 15 20 20 N 1.46495 * 109.47148 * 180.02562 * 19 18 16 21 21 C 1.36936 * 120.00125 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99764 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00160 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00041 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47090 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47010 * 120.00426 * 25 23 21 28 28 H 1.48496 * 109.47263 * 240.00492 * 25 23 21 29 29 H 1.09003 * 109.47077 * 296.09836 * 1 2 3 30 30 H 1.09003 * 109.47506 * 56.10085 * 1 2 3 31 31 H 1.09000 * 109.47408 * 176.10097 * 1 2 3 32 32 H 1.09000 * 110.36664 * 86.07743 * 4 2 1 33 33 H 1.09003 * 110.45987 * 323.80292 * 4 2 1 34 34 H 1.08001 * 119.70103 * 0.02562 * 9 8 6 35 35 H 1.08003 * 119.46741 * 179.70495 * 11 10 9 36 36 H 1.08000 * 120.85890 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.88368 * 239.52412 * 15 5 4 38 38 H 1.08997 * 110.01291 * 118.43246 * 15 5 4 39 39 H 1.09003 * 109.46578 * 173.54252 * 18 16 15 40 40 H 1.08996 * 109.47545 * 53.54476 * 18 16 15 41 41 H 1.08996 * 109.47492 * 300.00677 * 19 18 16 42 42 H 1.09003 * 109.46656 * 60.00454 * 19 18 16 43 43 H 0.97002 * 120.00242 * 0.02562 * 20 19 18 44 44 H 0.97000 * 120.00086 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4272 -1.2431 -0.7732 6 6 4.4477 -1.5616 -1.5939 7 8 5.5451 -1.8065 -1.1323 8 6 4.2323 -1.6132 -3.0557 9 6 5.2999 -1.4354 -3.9368 10 7 5.1100 -1.4863 -5.2387 11 6 3.9164 -1.6936 -5.7614 12 6 2.8053 -1.8741 -4.9557 13 17 1.2434 -2.1462 -5.6629 14 6 2.9534 -1.8352 -3.5791 15 6 3.4674 -1.2741 0.6961 16 6 2.0861 -0.8079 1.2023 17 1 1.4478 -1.6632 1.4240 18 6 2.2349 0.0877 2.4339 19 6 2.7847 -0.7361 3.6000 20 7 2.9267 0.1212 4.7794 21 6 3.4049 -0.4006 5.9517 22 1 3.6778 -1.4441 6.0066 23 6 3.5400 0.4119 7.0690 24 7 3.2078 1.6838 7.0019 25 14 4.1916 -0.3000 8.6684 26 1 4.4897 -1.7429 8.4828 27 1 5.4330 0.4151 9.0590 28 1 3.1708 -0.1382 9.7346 29 1 -0.3633 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1560 -0.1720 -2.0837 33 1 1.4525 -1.6704 -1.4043 34 1 6.2917 -1.2591 -3.5472 35 1 3.8044 -1.7233 -6.8352 36 1 2.1040 -1.9732 -2.9265 37 1 4.2425 -0.5997 1.0600 38 1 3.6662 -2.2883 1.0424 39 1 1.2618 0.4970 2.7051 40 1 2.9222 0.9032 2.2092 41 1 2.0974 -1.5517 3.8247 42 1 3.7579 -1.1454 3.3287 43 1 2.6820 1.0585 4.7300 44 1 3.3018 2.2514 7.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104792378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:42 Heat of formation + Delta-G solvation = -14.797777 kcal Electronic energy + Delta-G solvation = -26133.440779 eV Core-core repulsion = 22303.909956 eV Total energy + Delta-G solvation = -3829.530822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.06431 -40.71488 -39.15963 -37.72828 -36.92480 -35.03331 -33.79461 -33.41087 -32.36634 -31.73944 -28.75959 -27.61338 -26.33680 -25.36001 -24.68872 -23.88626 -22.07987 -21.35226 -20.91012 -19.17696 -18.64540 -18.21776 -17.89612 -17.51045 -16.71250 -16.62940 -16.13788 -15.84039 -15.57206 -15.44819 -15.24445 -15.06913 -14.78355 -14.42807 -14.16104 -13.93906 -13.69146 -13.56771 -13.27321 -13.13958 -13.07880 -12.89874 -12.64376 -12.53751 -12.32643 -12.30481 -12.07786 -11.91221 -11.69525 -11.56095 -11.54138 -11.26679 -11.03050 -10.94674 -10.72557 -10.20126 -9.81961 -9.01442 -7.97379 -5.26145 -0.63288 -0.21376 0.84025 1.45889 1.46980 1.51131 1.57054 1.69928 2.47742 2.54428 3.05427 3.28829 3.36357 3.36946 3.49441 3.51358 3.59256 3.65881 3.94998 4.08677 4.09047 4.20723 4.25340 4.41056 4.42092 4.52061 4.60610 4.62506 4.66836 4.70684 4.76579 4.84119 4.88822 5.01635 5.07761 5.15777 5.20808 5.28607 5.34644 5.42651 5.48606 5.53651 6.25809 6.26389 6.55297 6.84096 7.31727 8.08431 8.30914 9.26435 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002139 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.931143 B =13086.713149 C =14031.925707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.092 3.908 5 N -0.608 5.608 6 C 0.573 3.427 7 O -0.573 6.573 8 C -0.175 4.175 9 C 0.154 3.846 10 N -0.486 5.486 11 C 0.139 3.861 12 C -0.095 4.095 13 Cl -0.030 7.030 14 C -0.036 4.036 15 C 0.111 3.889 16 C -0.078 4.078 17 H 0.104 0.896 18 C -0.101 4.101 19 C 0.148 3.852 20 N -0.749 5.749 21 C -0.246 4.246 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.973 3.027 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.290 1.290 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.197 0.803 36 H 0.178 0.822 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.013 0.987 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -6.936 -31.076 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.101 0.899 4 C -0.029 4.029 5 N -0.339 5.339 6 C 0.362 3.638 7 O -0.454 6.454 8 C -0.181 4.181 9 C -0.004 4.004 10 N -0.194 5.194 11 C -0.019 4.019 12 C -0.124 4.124 13 Cl -0.002 7.002 14 C -0.062 4.062 15 C -0.012 4.012 16 C -0.098 4.098 17 H 0.122 0.878 18 C -0.139 4.139 19 C 0.022 3.978 20 N -0.391 5.391 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.217 1.217 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.187 0.813 35 H 0.214 0.786 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.031 0.969 43 H 0.206 0.794 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.157 -7.159 -31.402 32.994 hybrid contribution -0.073 0.093 1.912 1.916 sum -7.230 -7.066 -29.490 31.175 Atomic orbital electron populations 1.21703 0.91534 1.03352 1.02955 1.22427 0.97824 0.98917 0.92095 0.89919 1.23071 0.81623 0.99458 0.98710 1.48432 1.13146 1.65347 1.07000 1.17974 0.82968 0.76908 0.85966 1.90816 1.25140 1.51708 1.77697 1.20727 0.95656 1.08375 0.93319 1.23152 0.99261 0.90063 0.87877 1.68030 1.24286 1.13652 1.13395 1.23568 0.85586 0.90382 1.02361 1.22014 0.89938 1.06658 0.93779 1.98422 1.23894 1.94527 1.83309 1.22376 0.97357 0.91943 0.94508 1.22074 0.98859 1.01374 0.78862 1.22202 0.94358 0.99094 0.94122 0.87827 1.21567 1.01455 0.97676 0.93174 1.20875 0.96987 0.93412 0.86499 1.42617 1.78343 1.09880 1.08294 1.19670 1.33865 0.94699 0.89509 0.90848 1.25590 1.03462 0.96240 1.01668 1.69816 1.56150 1.05794 1.30252 0.85071 0.77178 0.77886 0.79630 1.19159 1.22057 1.21678 0.92405 0.90578 0.90958 0.88622 0.87924 0.81284 0.78584 0.80494 0.93066 0.91662 0.90709 0.92732 0.95829 0.96912 0.79422 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.31 71.98 0.67 -0.81 16 2 C -0.09 -1.38 3.09 -9.40 -0.03 -1.41 16 3 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 4 C 0.09 1.16 4.47 86.85 0.39 1.55 16 5 N -0.61 -12.83 3.33 -815.20 -2.71 -15.55 16 6 C 0.57 14.22 7.66 86.79 0.66 14.88 16 7 O -0.57 -19.37 16.96 -3.87 -0.07 -19.43 16 8 C -0.18 -3.23 5.68 -20.00 -0.11 -3.35 16 9 C 0.15 2.92 10.76 85.04 0.92 3.84 16 10 N -0.49 -8.30 10.34 -194.66 -2.01 -10.31 16 11 C 0.14 1.64 10.97 84.72 0.93 2.56 16 12 C -0.09 -1.04 6.34 22.38 0.14 -0.90 16 13 Cl -0.03 -0.26 28.98 -2.72 -0.08 -0.34 16 14 C -0.04 -0.45 8.00 22.75 0.18 -0.26 16 15 C 0.11 2.77 5.62 86.73 0.49 3.26 16 16 C -0.08 -1.63 2.45 -9.60 -0.02 -1.65 16 17 H 0.10 1.91 8.04 -2.39 -0.02 1.89 16 18 C -0.10 -2.92 4.72 30.59 0.14 -2.78 16 19 C 0.15 5.82 6.11 86.38 0.53 6.35 16 20 N -0.75 -38.65 5.60 -343.46 -1.92 -40.58 16 21 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 24 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 25 Si 0.97 46.88 29.55 68.60 2.03 48.90 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.10 0.93 6.83 -2.39 -0.02 0.92 16 33 H 0.10 0.78 6.69 -2.39 -0.02 0.76 16 34 H 0.17 3.27 7.85 -2.91 -0.02 3.25 16 35 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.18 1.49 4.68 -2.91 -0.01 1.47 16 37 H 0.05 1.57 7.76 -2.39 -0.02 1.55 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.70 8.06 -2.39 -0.02 1.69 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.01 0.53 7.49 -2.39 -0.02 0.51 16 43 H 0.37 20.35 7.67 -92.71 -0.71 19.64 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -73.91 375.91 2.02 -71.88 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.31 Total: 21.11 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.19 Total: 4.04 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -6.37 Total: -126.16 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.07 Total: -19.43 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -73.91 2.02 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104792378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.086 kcal (2) G-P(sol) polarization free energy of solvation -73.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds