Wall clock time and date at job start Tue Mar 31 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91541 * 2 1 4 4 C 1.55124 * 111.15891 * 236.07413 * 2 1 3 5 5 N 1.47432 * 104.93692 * 205.13156 * 4 2 1 6 6 C 1.34778 * 125.64292 * 203.96487 * 5 4 2 7 7 O 1.21527 * 119.99456 * 180.02562 * 6 5 4 8 8 C 1.48086 * 120.00407 * 0.04383 * 6 5 4 9 9 N 1.32774 * 119.73437 * 359.97438 * 8 6 5 10 10 C 1.31470 * 121.65292 * 179.97438 * 9 8 6 11 11 C 1.38641 * 120.94270 * 0.02760 * 10 9 8 12 12 C 1.38513 * 119.37253 * 359.97187 * 11 10 9 13 13 C 1.38810 * 118.47835 * 359.73443 * 12 11 10 14 14 Cl 1.73598 * 120.48771 * 180.26077 * 13 12 11 15 15 C 1.47017 * 108.70437 * 24.00488 * 5 4 2 16 16 C 1.54318 * 107.27462 * 358.93764 * 15 5 4 17 17 H 1.08998 * 110.72058 * 96.34446 * 16 15 5 18 18 C 1.52999 * 110.72472 * 219.44863 * 16 15 5 19 19 C 1.53006 * 109.46623 * 291.15597 * 18 16 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 16 21 21 C 1.36931 * 120.00396 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00545 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99833 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00256 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47136 * 89.99695 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99762 * 25 23 21 28 28 H 1.48496 * 109.47087 * 329.99418 * 25 23 21 29 29 H 1.09000 * 109.46825 * 296.09903 * 1 2 3 30 30 H 1.09007 * 109.46961 * 56.09603 * 1 2 3 31 31 H 1.08993 * 109.47349 * 176.09561 * 1 2 3 32 32 H 1.08996 * 110.42102 * 86.20771 * 4 2 1 33 33 H 1.09002 * 110.30029 * 323.99385 * 4 2 1 34 34 H 1.08001 * 119.52795 * 180.02562 * 10 9 8 35 35 H 1.07991 * 120.31174 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.75963 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.87932 * 239.52049 * 15 5 4 38 38 H 1.08999 * 110.00889 * 118.42901 * 15 5 4 39 39 H 1.09000 * 109.47486 * 171.15768 * 18 16 15 40 40 H 1.09001 * 109.47362 * 51.15045 * 18 16 15 41 41 H 1.08993 * 109.46955 * 300.00075 * 19 18 16 42 42 H 1.09000 * 109.47050 * 59.99904 * 19 18 16 43 43 H 0.97010 * 119.99909 * 359.97438 * 20 19 18 44 44 H 0.97001 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0899 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7705 6 6 4.4510 -1.5690 -1.5892 7 8 5.5164 -1.9208 -1.1222 8 6 4.2751 -1.4933 -3.0576 9 7 3.1088 -1.1083 -3.5621 10 6 2.9113 -1.0273 -4.8593 11 6 3.9209 -1.3436 -5.7553 12 6 5.1542 -1.7499 -5.2733 13 6 5.3372 -1.8208 -3.8991 14 17 6.8638 -2.3171 -3.2383 15 6 3.4671 -1.2781 0.6988 16 6 2.0862 -0.8079 1.2022 17 1 1.4450 -1.6614 1.4228 18 6 2.2349 0.0876 2.4338 19 6 2.7237 -0.7500 3.6173 20 7 2.8668 0.1076 4.7964 21 6 3.2950 -0.4254 5.9828 22 1 3.5268 -1.4781 6.0494 23 6 3.4300 0.3870 7.1002 24 7 3.1470 1.6699 7.0192 25 14 4.0135 -0.3403 8.7188 26 1 5.4947 -0.2630 8.7909 27 1 3.4224 0.4239 9.8465 28 1 3.5871 -1.7601 8.8058 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3633 -1.0252 -0.0700 32 1 2.1642 -0.1733 -2.0838 33 1 1.4552 -1.6695 -1.4053 34 1 1.9488 -0.7097 -5.2324 35 1 3.7474 -1.2738 -6.8189 36 1 5.9566 -2.0013 -5.9511 37 1 4.2434 -0.6057 1.0641 38 1 3.6624 -2.2928 1.0458 39 1 1.2706 0.5332 2.6777 40 1 2.9572 0.8766 2.2242 41 1 2.0015 -1.5389 3.8268 42 1 3.6881 -1.1956 3.3733 43 1 2.6589 1.0532 4.7365 44 1 3.2417 2.2376 7.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104931309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:31 Heat of formation + Delta-G solvation = 18.111807 kcal Electronic energy + Delta-G solvation = -26320.048166 eV Core-core repulsion = 22491.944410 eV Total energy + Delta-G solvation = -3828.103756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12592 -39.67106 -37.96467 -36.84788 -35.10057 -33.58355 -32.79716 -31.98300 -31.67498 -30.09089 -27.36262 -26.44049 -25.16260 -24.15261 -23.65201 -22.33627 -20.78793 -20.34233 -19.80986 -17.81590 -17.49544 -17.02058 -16.73696 -16.20231 -15.74704 -15.44000 -14.81025 -14.64677 -14.35668 -14.18971 -13.89237 -13.65181 -13.28777 -13.16143 -13.04309 -12.95513 -12.60363 -12.56446 -12.29582 -12.15479 -11.75087 -11.55259 -11.32940 -11.09866 -10.96378 -10.80043 -10.54859 -10.50475 -10.38795 -10.28720 -10.15521 -9.88220 -9.60894 -9.49221 -9.47081 -8.81220 -8.60274 -6.85899 -5.71104 -2.99298 0.06756 0.49804 1.70507 2.46301 2.73259 3.34997 3.48076 3.52876 3.54571 3.66914 4.12623 4.15873 4.30629 4.49156 4.58304 4.63279 4.70151 4.78178 4.85852 5.24263 5.28049 5.34075 5.35601 5.44478 5.58377 5.59567 5.62602 5.73789 5.80042 5.85178 5.92788 5.96801 6.09039 6.10176 6.22490 6.24954 6.38243 6.44301 6.48166 6.91046 6.95311 7.10240 7.41682 7.75728 8.00720 8.48292 9.59108 10.17983 10.52418 11.52039 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002373 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.108219 B =11798.751599 C =13165.076762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.107 3.893 5 N -0.596 5.596 6 C 0.572 3.428 7 O -0.512 6.512 8 C 0.096 3.904 9 N -0.439 5.439 10 C 0.096 3.904 11 C -0.140 4.140 12 C -0.076 4.076 13 C -0.041 4.041 14 Cl -0.012 7.012 15 C 0.111 3.889 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -5.504 -32.287 32.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 H 0.103 0.897 4 C -0.016 4.016 5 N -0.328 5.328 6 C 0.357 3.643 7 O -0.386 6.386 8 C -0.043 4.043 9 N -0.151 5.151 10 C -0.063 4.063 11 C -0.160 4.160 12 C -0.102 4.102 13 C -0.071 4.071 14 Cl 0.017 6.983 15 C -0.010 4.010 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.153 4.153 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.724 -5.691 -31.264 31.894 hybrid contribution 1.012 -0.289 0.270 1.086 sum -1.712 -5.980 -30.994 31.611 Atomic orbital electron populations 1.21661 0.93680 1.01980 1.02211 1.22542 0.96281 0.99579 0.94145 0.89710 1.22782 0.82012 0.98739 0.98025 1.48290 1.12584 1.64709 1.07235 1.17352 0.83482 0.79238 0.84194 1.90916 1.25137 1.46833 1.75754 1.21095 0.89269 0.98943 0.94973 1.68039 1.20598 1.11000 1.15418 1.23049 0.99766 0.95446 0.88039 1.22398 0.93045 0.98348 1.02240 1.21629 0.98651 0.96918 0.93003 1.22039 0.90351 1.00828 0.93929 1.98450 1.25775 1.88438 1.85605 1.22184 0.98595 1.02269 0.78001 1.22288 0.94898 0.98863 0.94842 0.89600 1.21734 1.01977 0.98066 0.93491 1.20690 0.97121 0.93232 0.86600 1.42371 1.80826 1.08401 1.06223 1.19245 1.36285 0.93683 0.87581 0.91213 1.24742 1.02628 0.95670 0.98157 1.69664 1.55380 1.03853 1.29508 0.86184 0.78360 0.77964 0.83682 1.21731 1.21800 1.20776 0.91738 0.92555 0.92495 0.88067 0.91536 0.81250 0.83308 0.83070 0.90509 0.91038 0.91302 0.91716 0.96450 0.96319 0.78342 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.32 37.16 0.35 -0.87 16 2 C -0.11 -1.12 3.10 -88.35 -0.27 -1.40 16 3 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 4 C 0.11 1.12 5.42 -2.41 -0.01 1.11 16 5 N -0.60 -7.95 3.33 -171.40 -0.57 -8.52 16 6 C 0.57 8.27 7.83 -12.22 -0.10 8.17 16 7 O -0.51 -8.79 14.27 5.34 0.08 -8.72 16 8 C 0.10 1.11 6.72 -82.98 -0.56 0.56 16 9 N -0.44 -4.07 6.60 -9.78 -0.06 -4.13 16 10 C 0.10 0.55 11.18 -17.56 -0.20 0.36 16 11 C -0.14 -0.63 10.11 -39.33 -0.40 -1.03 16 12 C -0.08 -0.49 9.98 -39.27 -0.39 -0.88 16 13 C -0.04 -0.42 6.37 -38.93 -0.25 -0.67 16 14 Cl -0.01 -0.14 26.04 -51.86 -1.35 -1.49 16 15 C 0.11 1.58 5.73 -3.07 -0.02 1.56 16 16 C -0.09 -1.14 2.42 -88.79 -0.21 -1.36 16 17 H 0.09 1.06 8.04 -51.93 -0.42 0.64 16 18 C -0.11 -1.82 4.72 -26.73 -0.13 -1.95 16 19 C 0.15 3.10 6.13 -4.04 -0.02 3.07 16 20 N -0.73 -19.24 5.60 -59.91 -0.34 -19.57 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.94 -28.97 13.06 55.49 0.72 -28.25 16 25 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.10 1.01 5.88 -51.93 -0.31 0.70 16 33 H 0.07 0.66 7.99 -51.93 -0.41 0.25 16 34 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.15 0.17 8.06 -52.49 -0.42 -0.26 16 36 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.08 1.22 7.73 -51.93 -0.40 0.82 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.40 7.58 -51.93 -0.39 0.00 16 43 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -34.71 374.31 -9.79 -44.49 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.43 Total: 3.44 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.46 Total: -0.91 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.25 Total: -60.47 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.35 Total: -1.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.71 -9.79 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104931309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.605 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds