Wall clock time and date at job start Tue Mar 31 2020 20:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91541 * 2 1 4 4 C 1.55124 * 111.15891 * 236.07413 * 2 1 3 5 5 N 1.47432 * 104.93692 * 205.13156 * 4 2 1 6 6 C 1.34778 * 125.64292 * 203.96487 * 5 4 2 7 7 O 1.21527 * 119.99456 * 180.02562 * 6 5 4 8 8 C 1.48086 * 120.00407 * 0.04383 * 6 5 4 9 9 N 1.32774 * 119.73437 * 359.97438 * 8 6 5 10 10 C 1.31470 * 121.65292 * 179.97438 * 9 8 6 11 11 C 1.38641 * 120.94270 * 0.02760 * 10 9 8 12 12 C 1.38513 * 119.37253 * 359.97187 * 11 10 9 13 13 C 1.38810 * 118.47835 * 359.73443 * 12 11 10 14 14 Cl 1.73598 * 120.48771 * 180.26077 * 13 12 11 15 15 C 1.47017 * 108.70437 * 24.00488 * 5 4 2 16 16 C 1.54318 * 107.27462 * 358.93764 * 15 5 4 17 17 H 1.08998 * 110.72058 * 96.34446 * 16 15 5 18 18 C 1.52999 * 110.72472 * 219.44863 * 16 15 5 19 19 C 1.53006 * 109.46623 * 291.15597 * 18 16 15 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 16 21 21 C 1.36931 * 120.00396 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00545 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99833 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00256 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47136 * 89.99695 * 25 23 21 27 27 H 1.48503 * 109.47098 * 209.99762 * 25 23 21 28 28 H 1.48496 * 109.47087 * 329.99418 * 25 23 21 29 29 H 1.09000 * 109.46825 * 296.09903 * 1 2 3 30 30 H 1.09007 * 109.46961 * 56.09603 * 1 2 3 31 31 H 1.08993 * 109.47349 * 176.09561 * 1 2 3 32 32 H 1.08996 * 110.42102 * 86.20771 * 4 2 1 33 33 H 1.09002 * 110.30029 * 323.99385 * 4 2 1 34 34 H 1.08001 * 119.52795 * 180.02562 * 10 9 8 35 35 H 1.07991 * 120.31174 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.75963 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.87932 * 239.52049 * 15 5 4 38 38 H 1.08999 * 110.00889 * 118.42901 * 15 5 4 39 39 H 1.09000 * 109.47486 * 171.15768 * 18 16 15 40 40 H 1.09001 * 109.47362 * 51.15045 * 18 16 15 41 41 H 1.08993 * 109.46955 * 300.00075 * 19 18 16 42 42 H 1.09000 * 109.47050 * 59.99904 * 19 18 16 43 43 H 0.97010 * 119.99909 * 359.97438 * 20 19 18 44 44 H 0.97001 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0899 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7705 6 6 4.4510 -1.5690 -1.5892 7 8 5.5164 -1.9208 -1.1222 8 6 4.2751 -1.4933 -3.0576 9 7 3.1088 -1.1083 -3.5621 10 6 2.9113 -1.0273 -4.8593 11 6 3.9209 -1.3436 -5.7553 12 6 5.1542 -1.7499 -5.2733 13 6 5.3372 -1.8208 -3.8991 14 17 6.8638 -2.3171 -3.2383 15 6 3.4671 -1.2781 0.6988 16 6 2.0862 -0.8079 1.2022 17 1 1.4450 -1.6614 1.4228 18 6 2.2349 0.0876 2.4338 19 6 2.7237 -0.7500 3.6173 20 7 2.8668 0.1076 4.7964 21 6 3.2950 -0.4254 5.9828 22 1 3.5268 -1.4781 6.0494 23 6 3.4300 0.3870 7.1002 24 7 3.1470 1.6699 7.0192 25 14 4.0135 -0.3403 8.7188 26 1 5.4947 -0.2630 8.7909 27 1 3.4224 0.4239 9.8465 28 1 3.5871 -1.7601 8.8058 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3633 -1.0252 -0.0700 32 1 2.1642 -0.1733 -2.0838 33 1 1.4552 -1.6695 -1.4053 34 1 1.9488 -0.7097 -5.2324 35 1 3.7474 -1.2738 -6.8189 36 1 5.9566 -2.0013 -5.9511 37 1 4.2434 -0.6057 1.0641 38 1 3.6624 -2.2928 1.0458 39 1 1.2706 0.5332 2.6777 40 1 2.9572 0.8766 2.2242 41 1 2.0015 -1.5389 3.8268 42 1 3.6881 -1.1956 3.3733 43 1 2.6589 1.0532 4.7365 44 1 3.2417 2.2376 7.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104931309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:30 Heat of formation + Delta-G solvation = -3.963606 kcal Electronic energy + Delta-G solvation = -26321.005427 eV Core-core repulsion = 22491.944410 eV Total energy + Delta-G solvation = -3829.061017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -41.88542 -40.54694 -39.03850 -37.62230 -36.86814 -34.78134 -33.69069 -33.34108 -32.33884 -31.69755 -28.75950 -27.32542 -26.33974 -25.27337 -24.49501 -23.82896 -22.06541 -21.25095 -20.90949 -19.16854 -18.65961 -18.15414 -17.41705 -17.12210 -16.71927 -16.61756 -16.25285 -15.67982 -15.51227 -15.37754 -15.11575 -15.02960 -14.41758 -14.31748 -14.19409 -13.97670 -13.56441 -13.47467 -13.15590 -13.09215 -13.03944 -12.87663 -12.67169 -12.56723 -12.36289 -12.25285 -12.09720 -11.90433 -11.67736 -11.53702 -11.35433 -11.01572 -10.94228 -10.90447 -10.31043 -10.16760 -9.63561 -9.02057 -7.97210 -5.26317 -0.57855 -0.01340 0.99855 1.45170 1.47737 1.56078 1.62686 1.78637 2.54414 2.65743 2.95256 3.36067 3.45670 3.57075 3.61664 3.65074 3.70846 3.87864 4.14345 4.17041 4.25184 4.34962 4.36052 4.44045 4.51809 4.64288 4.70875 4.78409 4.79318 4.85352 4.90797 4.94094 4.97868 5.05299 5.21631 5.25815 5.29643 5.34911 5.42666 5.47381 5.48413 5.56534 6.25763 6.38077 6.55390 6.98763 7.31414 8.07572 8.31169 9.26495 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002373 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.108219 B =11798.751599 C =13165.076762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.079 0.921 4 C 0.113 3.887 5 N -0.599 5.599 6 C 0.560 3.440 7 O -0.555 6.555 8 C 0.066 3.934 9 N -0.452 5.452 10 C 0.098 3.902 11 C -0.113 4.113 12 C -0.076 4.076 13 C -0.058 4.058 14 Cl -0.042 7.042 15 C 0.112 3.888 16 C -0.079 4.079 17 H 0.097 0.903 18 C -0.099 4.099 19 C 0.150 3.850 20 N -0.748 5.748 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.975 3.025 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.211 0.789 35 H 0.196 0.804 36 H 0.176 0.824 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.011 0.989 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -5.862 -35.416 36.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.331 5.331 6 C 0.348 3.652 7 O -0.433 6.433 8 C -0.071 4.071 9 N -0.164 5.164 10 C -0.062 4.062 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.088 4.088 14 Cl -0.013 7.013 15 C -0.011 4.011 16 C -0.098 4.098 17 H 0.115 0.885 18 C -0.137 4.137 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.380 4.380 22 H 0.091 0.909 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.804 3.196 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.213 0.787 36 H 0.194 0.806 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.206 0.794 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.713 -6.075 -34.423 35.271 hybrid contribution 1.571 -0.178 1.050 1.898 sum -3.143 -6.253 -33.373 34.099 Atomic orbital electron populations 1.21643 0.91708 1.02923 1.02774 1.22521 0.97735 0.98793 0.92619 0.90255 1.22901 0.80532 0.99244 0.98132 1.48416 1.13641 1.64486 1.06542 1.18004 0.82970 0.78350 0.85869 1.90872 1.26710 1.48765 1.76949 1.20655 0.90988 1.02239 0.93181 1.67948 1.19446 1.11494 1.17535 1.23834 1.01680 0.93849 0.86816 1.22943 0.91210 0.94761 1.04365 1.22021 1.00459 0.96302 0.91419 1.22264 0.89009 1.02099 0.95449 1.98432 1.27613 1.88904 1.86311 1.22036 0.98755 1.00915 0.79346 1.22178 0.94319 0.98993 0.94333 0.88459 1.21559 1.01590 0.97585 0.92962 1.20855 0.96945 0.93377 0.86480 1.42604 1.80707 1.08576 1.07184 1.19640 1.35623 0.93954 0.88775 0.90925 1.25604 1.03437 0.96156 1.01714 1.69817 1.56818 1.05099 1.30278 0.85118 0.77610 0.77733 0.79186 1.21511 1.21740 1.19391 0.92439 0.90532 0.91583 0.86938 0.90344 0.77276 0.78651 0.80643 0.93175 0.92258 0.90652 0.92774 0.95895 0.97075 0.79399 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.32 71.98 0.67 -1.33 16 2 C -0.10 -1.93 3.10 -9.33 -0.03 -1.95 16 3 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 4 C 0.11 2.22 5.42 86.93 0.47 2.70 16 5 N -0.60 -16.41 3.33 -814.49 -2.71 -19.12 16 6 C 0.56 17.00 7.83 86.86 0.68 17.68 16 7 O -0.55 -20.61 14.27 -3.80 -0.05 -20.67 16 8 C 0.07 1.52 6.72 41.90 0.28 1.80 16 9 N -0.45 -7.36 6.60 -184.84 -1.22 -8.58 16 10 C 0.10 0.70 11.18 84.84 0.95 1.65 16 11 C -0.11 -0.47 10.11 22.43 0.23 -0.24 16 12 C -0.08 -0.77 9.98 22.47 0.22 -0.54 16 13 C -0.06 -1.15 6.37 22.69 0.14 -1.01 16 14 Cl -0.04 -1.03 26.04 -2.72 -0.07 -1.11 16 15 C 0.11 3.36 5.73 86.73 0.50 3.86 16 16 C -0.08 -2.01 2.42 -9.61 -0.02 -2.03 16 17 H 0.10 2.30 8.04 -2.39 -0.02 2.28 16 18 C -0.10 -3.20 4.72 30.60 0.14 -3.05 16 19 C 0.15 6.29 6.13 86.38 0.53 6.82 16 20 N -0.75 -40.14 5.60 -343.46 -1.92 -42.07 16 21 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -61.14 13.06 21.65 0.28 -60.85 16 25 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.11 2.00 5.88 -2.39 -0.01 1.99 16 33 H 0.08 1.38 7.99 -2.39 -0.02 1.36 16 34 H 0.21 -0.25 8.06 -2.91 -0.02 -0.28 16 35 H 0.20 -0.94 8.06 -2.92 -0.02 -0.97 16 36 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.05 1.74 7.73 -2.38 -0.02 1.73 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 1.86 8.00 -2.39 -0.02 1.84 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 43 H 0.37 21.07 7.67 -92.70 -0.71 20.36 16 44 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.53 374.31 2.71 -76.83 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.30 Total: 19.26 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.07 Total: 6.46 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -5.57 Total: -130.61 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -79.53 2.71 -76.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104931309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.862 kcal (2) G-P(sol) polarization free energy of solvation -79.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds