Wall clock time and date at job start Tue Mar 31 2020 20:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.30102 * 2 1 4 4 C 1.54390 * 110.43199 * 237.76554 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.94877 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21281 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99492 * 0.02562 * 6 5 4 9 9 C 1.50701 * 109.46814 * 180.02562 * 8 6 5 10 10 C 1.38659 * 120.79445 * 264.72184 * 9 8 6 11 11 C 1.38182 * 119.17226 * 179.73209 * 10 9 8 12 12 N 1.31876 * 120.80131 * 0.55022 * 11 10 9 13 13 C 1.31843 * 121.73604 * 359.72701 * 12 11 10 14 14 C 1.38359 * 120.74476 * 359.97438 * 13 12 11 15 15 Cl 1.73597 * 120.43325 * 179.97438 * 14 13 12 16 16 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 17 17 C 1.54281 * 110.34138 * 122.17156 * 2 1 3 18 18 H 1.09002 * 110.34302 * 0.10785 * 17 2 1 19 19 C 1.52998 * 110.34397 * 237.95320 * 17 2 1 20 20 N 1.46495 * 109.47115 * 176.47731 * 19 17 2 21 21 C 1.36937 * 120.00092 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00158 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00235 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99512 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47037 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47377 * 119.99713 * 25 23 21 28 28 H 1.48504 * 109.46875 * 240.00090 * 25 23 21 29 29 H 1.09001 * 109.47535 * 297.82857 * 1 2 3 30 30 H 1.09004 * 109.47280 * 57.82779 * 1 2 3 31 31 H 1.08996 * 109.47106 * 177.82687 * 1 2 3 32 32 H 1.08998 * 110.40404 * 23.73428 * 4 2 1 33 33 H 1.09004 * 110.40272 * 146.16668 * 4 2 1 34 34 H 1.09002 * 109.47085 * 299.99989 * 8 6 5 35 35 H 1.08997 * 109.47358 * 59.99864 * 8 6 5 36 36 H 1.08000 * 120.41003 * 359.97160 * 10 9 8 37 37 H 1.08002 * 119.59882 * 180.27355 * 11 10 9 38 38 H 1.08004 * 119.63058 * 180.02562 * 13 12 11 39 39 H 1.08990 * 110.41068 * 280.80521 * 16 5 4 40 40 H 1.09000 * 110.40585 * 158.36660 * 16 5 4 41 41 H 1.09003 * 109.47249 * 296.47571 * 19 17 2 42 42 H 1.09002 * 109.47127 * 56.47409 * 19 17 2 43 43 H 0.96998 * 120.00197 * 359.97438 * 20 19 17 44 44 H 0.96998 * 119.99227 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2238 5 7 2.3177 -2.1428 -0.7212 6 6 2.0835 -3.3102 -1.3529 7 8 2.3428 -4.3598 -0.8033 8 6 1.4994 -3.3111 -2.7421 9 6 1.3369 -4.7318 -3.2177 10 6 2.3125 -5.3358 -3.9962 11 6 2.1315 -6.6420 -4.4092 12 7 1.0426 -7.3094 -4.0807 13 6 0.0914 -6.7665 -3.3468 14 6 0.2051 -5.4649 -2.8915 15 17 -1.0526 -4.7579 -1.9263 16 6 2.8825 -1.9400 0.6333 17 6 2.0663 -0.7702 1.2245 18 1 1.2398 -1.1502 1.8249 19 6 2.9649 0.1343 2.0701 20 7 3.3952 -0.5884 3.2695 21 6 4.2115 0.0245 4.1823 22 1 4.5384 1.0406 4.0178 23 6 4.6196 -0.6605 5.3187 24 7 4.2215 -1.8990 5.5189 25 14 5.7325 0.1758 6.5641 26 1 6.0343 1.5570 6.1094 27 1 5.0506 0.2261 7.8823 28 1 6.9981 -0.5908 6.6904 29 1 -0.3634 0.4797 0.9088 30 1 -0.3634 0.5472 -0.8699 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7879 -2.0205 33 1 2.9969 -0.3224 -1.5778 34 1 0.5265 -2.8197 -2.7275 35 1 2.1668 -2.7756 -3.4172 36 1 3.2044 -4.7933 -4.2730 37 1 2.8891 -7.1206 -5.0121 38 1 -0.7862 -7.3446 -3.0975 39 1 3.9373 -1.6732 0.5693 40 1 2.7525 -2.8377 1.2377 41 1 3.8394 0.4247 1.4877 42 1 2.4106 1.0262 2.3625 43 1 3.1012 -1.5009 3.4176 44 1 4.5070 -2.3777 6.3127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106667174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:39 Heat of formation + Delta-G solvation = 3.624923 kcal Electronic energy + Delta-G solvation = -26530.706191 eV Core-core repulsion = 22701.974237 eV Total energy + Delta-G solvation = -3828.731954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.81400 -39.91086 -37.98659 -36.89788 -34.66595 -34.15339 -32.75025 -31.42636 -31.35679 -29.72322 -28.43573 -26.54183 -25.39166 -23.88532 -23.46113 -22.62474 -21.27353 -19.79717 -19.37798 -17.36755 -17.23863 -17.17411 -16.83640 -16.30168 -15.91267 -15.33340 -14.79937 -14.54056 -14.38107 -14.21515 -14.13833 -13.58353 -13.31368 -13.14377 -13.08909 -13.01529 -12.80870 -12.38155 -12.27991 -12.13040 -11.87795 -11.72470 -11.49237 -11.31528 -11.18585 -10.88006 -10.61788 -10.54376 -10.32969 -10.17505 -9.98682 -9.90056 -9.70996 -9.66287 -9.23789 -8.89744 -8.66341 -6.93700 -5.76516 -3.06063 0.62111 0.75493 1.75856 2.58392 2.89757 3.38676 3.43164 3.48259 3.50993 4.05751 4.09997 4.26135 4.37206 4.53006 4.57032 4.59365 4.80652 4.85588 4.90188 4.95995 5.12826 5.25194 5.26765 5.36944 5.45532 5.47482 5.52569 5.57408 5.70282 5.72465 5.76368 5.95750 6.03827 6.08902 6.15258 6.16834 6.20148 6.37899 6.48332 6.68922 6.81716 7.51116 7.56388 7.69506 8.12608 8.41611 9.52922 10.10046 10.44160 11.46129 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.002546 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.860692 B =10994.398171 C =11599.728245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.537 3.463 7 O -0.529 6.529 8 C -0.106 4.106 9 C -0.011 4.011 10 C -0.149 4.149 11 C 0.102 3.898 12 N -0.472 5.472 13 C 0.115 3.885 14 C -0.075 4.075 15 Cl -0.049 7.049 16 C 0.117 3.883 17 C -0.103 4.103 18 H 0.082 0.918 19 C 0.164 3.836 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -1.794 -24.545 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.355 5.355 6 C 0.325 3.675 7 O -0.406 6.406 8 C -0.146 4.146 9 C -0.020 4.020 10 C -0.169 4.169 11 C -0.054 4.054 12 N -0.181 5.181 13 C -0.043 4.043 14 C -0.104 4.104 15 Cl -0.020 7.020 16 C -0.005 4.005 17 C -0.123 4.123 18 H 0.100 0.900 19 C 0.036 3.964 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.587 -3.146 -24.425 26.427 hybrid contribution 0.566 1.172 1.268 1.817 sum -9.021 -1.974 -23.157 24.930 Atomic orbital electron populations 1.21836 0.94464 1.01731 1.01861 1.22113 0.96171 0.99763 0.94040 0.89205 1.22538 1.00570 0.81957 0.96994 1.49014 1.63066 1.05122 1.18314 1.19701 0.78563 0.82545 0.86699 1.90773 1.52149 1.30309 1.67321 1.20726 1.04406 0.93903 0.95567 1.19623 0.92330 0.95370 0.94668 1.22049 0.99274 0.96754 0.98775 1.22842 0.94729 0.91234 0.96589 1.67804 1.01634 1.36844 1.11778 1.22764 0.97993 0.90443 0.93127 1.21978 0.92885 0.95969 0.99589 1.98391 1.50372 1.83603 1.69641 1.22449 0.97457 0.99244 0.81357 1.22393 0.98894 0.95475 0.95525 0.89957 1.20716 0.94253 0.93353 0.88111 1.42386 1.58976 1.15336 1.21076 1.19244 1.21447 0.97099 0.99448 0.91138 1.24760 1.01153 0.96314 0.98720 1.69674 1.49188 1.10297 1.28752 0.86128 0.80217 0.78402 0.81491 1.20574 1.21869 1.21867 0.92011 0.92788 0.92820 0.90570 0.90715 0.87165 0.87188 0.83862 0.81904 0.81788 0.90393 0.89752 0.96137 0.95976 0.78211 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.91 37.16 0.33 -1.07 16 2 C -0.10 -1.11 3.30 -89.22 -0.29 -1.40 16 3 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 4 C 0.10 0.98 6.47 -2.41 -0.02 0.96 16 5 N -0.62 -8.13 3.32 -169.31 -0.56 -8.69 16 6 C 0.54 7.38 7.91 -10.98 -0.09 7.30 16 7 O -0.53 -9.67 16.30 5.56 0.09 -9.58 16 8 C -0.11 -0.99 4.40 -29.03 -0.13 -1.12 16 9 C -0.01 -0.11 4.41 -104.28 -0.46 -0.57 16 10 C -0.15 -1.33 9.80 -39.45 -0.39 -1.72 16 11 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 12 N -0.47 -5.18 10.36 -13.22 -0.14 -5.31 16 13 C 0.11 1.21 10.99 -17.50 -0.19 1.01 16 14 C -0.08 -0.83 6.34 -39.35 -0.25 -1.08 16 15 Cl -0.05 -0.53 27.58 -51.86 -1.43 -1.96 16 16 C 0.12 1.88 6.34 -2.41 -0.02 1.86 16 17 C -0.10 -1.57 2.76 -89.22 -0.25 -1.82 16 18 H 0.08 1.37 7.71 -51.93 -0.40 0.97 16 19 C 0.16 3.09 5.37 -4.05 -0.02 3.07 16 20 N -0.73 -18.23 5.46 -59.91 -0.33 -18.56 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.53 7.02 -51.93 -0.36 0.17 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.89 7.05 -51.93 -0.37 0.53 16 35 H 0.11 0.70 8.07 -51.93 -0.42 0.29 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.08 1.32 7.78 -51.93 -0.40 0.92 16 40 H 0.08 1.60 7.88 -51.93 -0.41 1.19 16 41 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.19 7.56 -40.82 -0.31 9.89 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -34.57 380.46 -9.56 -44.13 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.42 Total: 5.66 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.21 Total: -1.16 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.30 Total: -60.23 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.57 -9.56 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106667174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.756 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds