Wall clock time and date at job start Tue Mar 31 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.30102 * 2 1 4 4 C 1.54390 * 110.43199 * 237.76554 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.94877 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21281 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99492 * 0.02562 * 6 5 4 9 9 C 1.50701 * 109.46814 * 180.02562 * 8 6 5 10 10 C 1.38659 * 120.79445 * 264.72184 * 9 8 6 11 11 C 1.38182 * 119.17226 * 179.73209 * 10 9 8 12 12 N 1.31876 * 120.80131 * 0.55022 * 11 10 9 13 13 C 1.31843 * 121.73604 * 359.72701 * 12 11 10 14 14 C 1.38359 * 120.74476 * 359.97438 * 13 12 11 15 15 Cl 1.73597 * 120.43325 * 179.97438 * 14 13 12 16 16 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 17 17 C 1.54281 * 110.34138 * 122.17156 * 2 1 3 18 18 H 1.09002 * 110.34302 * 0.10785 * 17 2 1 19 19 C 1.52998 * 110.34397 * 237.95320 * 17 2 1 20 20 N 1.46495 * 109.47115 * 176.47731 * 19 17 2 21 21 C 1.36937 * 120.00092 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00158 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00235 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99512 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47037 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47377 * 119.99713 * 25 23 21 28 28 H 1.48504 * 109.46875 * 240.00090 * 25 23 21 29 29 H 1.09001 * 109.47535 * 297.82857 * 1 2 3 30 30 H 1.09004 * 109.47280 * 57.82779 * 1 2 3 31 31 H 1.08996 * 109.47106 * 177.82687 * 1 2 3 32 32 H 1.08998 * 110.40404 * 23.73428 * 4 2 1 33 33 H 1.09004 * 110.40272 * 146.16668 * 4 2 1 34 34 H 1.09002 * 109.47085 * 299.99989 * 8 6 5 35 35 H 1.08997 * 109.47358 * 59.99864 * 8 6 5 36 36 H 1.08000 * 120.41003 * 359.97160 * 10 9 8 37 37 H 1.08002 * 119.59882 * 180.27355 * 11 10 9 38 38 H 1.08004 * 119.63058 * 180.02562 * 13 12 11 39 39 H 1.08990 * 110.41068 * 280.80521 * 16 5 4 40 40 H 1.09000 * 110.40585 * 158.36660 * 16 5 4 41 41 H 1.09003 * 109.47249 * 296.47571 * 19 17 2 42 42 H 1.09002 * 109.47127 * 56.47409 * 19 17 2 43 43 H 0.96998 * 120.00197 * 359.97438 * 20 19 17 44 44 H 0.96998 * 119.99227 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2238 5 7 2.3177 -2.1428 -0.7212 6 6 2.0835 -3.3102 -1.3529 7 8 2.3428 -4.3598 -0.8033 8 6 1.4994 -3.3111 -2.7421 9 6 1.3369 -4.7318 -3.2177 10 6 2.3125 -5.3358 -3.9962 11 6 2.1315 -6.6420 -4.4092 12 7 1.0426 -7.3094 -4.0807 13 6 0.0914 -6.7665 -3.3468 14 6 0.2051 -5.4649 -2.8915 15 17 -1.0526 -4.7579 -1.9263 16 6 2.8825 -1.9400 0.6333 17 6 2.0663 -0.7702 1.2245 18 1 1.2398 -1.1502 1.8249 19 6 2.9649 0.1343 2.0701 20 7 3.3952 -0.5884 3.2695 21 6 4.2115 0.0245 4.1823 22 1 4.5384 1.0406 4.0178 23 6 4.6196 -0.6605 5.3187 24 7 4.2215 -1.8990 5.5189 25 14 5.7325 0.1758 6.5641 26 1 6.0343 1.5570 6.1094 27 1 5.0506 0.2261 7.8823 28 1 6.9981 -0.5908 6.6904 29 1 -0.3634 0.4797 0.9088 30 1 -0.3634 0.5472 -0.8699 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7879 -2.0205 33 1 2.9969 -0.3224 -1.5778 34 1 0.5265 -2.8197 -2.7275 35 1 2.1668 -2.7756 -3.4172 36 1 3.2044 -4.7933 -4.2730 37 1 2.8891 -7.1206 -5.0121 38 1 -0.7862 -7.3446 -3.0975 39 1 3.9373 -1.6732 0.5693 40 1 2.7525 -2.8377 1.2377 41 1 3.8394 0.4247 1.4877 42 1 2.4106 1.0262 2.3625 43 1 3.1012 -1.5009 3.4176 44 1 4.5070 -2.3777 6.3127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106667174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:37 Heat of formation + Delta-G solvation = -18.929846 kcal Electronic energy + Delta-G solvation = -26531.684239 eV Core-core repulsion = 22701.974237 eV Total energy + Delta-G solvation = -3829.710002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.64777 -40.88047 -39.12302 -37.69659 -36.43861 -34.96813 -34.06458 -33.00197 -32.06765 -31.00485 -29.57940 -27.39648 -26.91644 -25.11480 -24.59970 -23.56501 -22.56574 -20.97349 -20.38599 -19.09493 -18.18133 -17.99896 -17.88474 -17.14993 -16.98156 -16.49558 -16.33937 -15.77577 -15.47588 -15.22602 -15.10025 -14.96264 -14.75684 -14.31476 -14.10896 -13.88515 -13.77564 -13.57684 -13.26608 -13.07891 -13.05223 -12.86471 -12.68670 -12.65598 -12.44021 -12.29741 -12.09046 -11.97742 -11.74512 -11.57499 -11.40215 -11.15574 -10.95556 -10.64493 -10.56777 -9.98293 -9.76058 -9.00635 -7.95401 -5.24754 -0.10896 0.01904 0.97548 1.46471 1.47568 1.56040 1.57645 1.91001 2.55366 2.64261 3.31156 3.38251 3.43087 3.44584 3.60353 3.61299 3.81852 3.83766 3.89653 4.17155 4.21994 4.27972 4.35040 4.38315 4.46960 4.52399 4.58359 4.61023 4.67464 4.75172 4.81760 4.86452 4.93613 5.03613 5.05925 5.07687 5.24869 5.29881 5.31298 5.49260 5.49803 5.55317 6.26285 6.55950 6.79239 7.08532 7.32171 8.08884 8.30091 9.28529 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.002546 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.860692 B =10994.398171 C =11599.728245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.108 0.892 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.532 3.468 7 O -0.585 6.585 8 C -0.095 4.095 9 C -0.027 4.027 10 C -0.147 4.147 11 C 0.096 3.904 12 N -0.493 5.493 13 C 0.101 3.899 14 C -0.090 4.090 15 Cl -0.056 7.056 16 C 0.122 3.878 17 C -0.094 4.094 18 H 0.061 0.939 19 C 0.163 3.837 20 N -0.749 5.749 21 C -0.240 4.240 22 H 0.081 0.919 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.974 3.026 26 H -0.261 1.261 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.175 0.825 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.370 0.630 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 0.619 -27.318 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.019 4.019 5 N -0.352 5.352 6 C 0.322 3.678 7 O -0.465 6.465 8 C -0.134 4.134 9 C -0.036 4.036 10 C -0.167 4.167 11 C -0.060 4.060 12 N -0.203 5.203 13 C -0.056 4.056 14 C -0.119 4.119 15 Cl -0.027 7.027 16 C -0.002 4.002 17 C -0.114 4.114 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.392 5.392 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.803 3.197 26 H -0.185 1.185 27 H -0.222 1.222 28 H -0.223 1.223 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.190 0.810 37 H 0.210 0.790 38 H 0.192 0.808 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.202 0.798 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.388 -0.656 -27.255 28.834 hybrid contribution 0.498 0.425 2.075 2.176 sum -8.890 -0.230 -25.180 26.704 Atomic orbital electron populations 1.21817 0.93423 1.01384 1.02914 1.22133 0.96960 1.00138 0.92070 0.87377 1.22842 1.02745 0.79273 0.97042 1.49082 1.62352 1.06828 1.16949 1.20542 0.77574 0.81651 0.88016 1.90751 1.54495 1.32354 1.68941 1.20765 1.05717 0.94036 0.92866 1.19907 0.92483 0.96103 0.95130 1.22419 0.99651 0.96798 0.97798 1.23405 0.94662 0.91586 0.96333 1.67835 1.02443 1.37594 1.12393 1.22988 0.98561 0.90675 0.93353 1.22139 0.93368 0.96411 1.00001 1.98380 1.50718 1.83648 1.69934 1.22118 0.97282 0.97669 0.83095 1.22222 0.97324 0.95109 0.96708 0.92094 1.20908 0.95141 0.93666 0.86597 1.42666 1.58765 1.15102 1.22621 1.19703 1.20570 0.97361 0.99586 0.90129 1.25623 1.03433 0.97061 1.01117 1.69850 1.51215 1.12022 1.29294 0.85057 0.77814 0.78139 0.78664 1.18547 1.22225 1.22312 0.93070 0.89473 0.94060 0.86716 0.88618 0.85535 0.83212 0.80981 0.79043 0.80783 0.91496 0.94098 0.95100 0.95248 0.79835 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.91 71.98 0.64 -1.69 16 2 C -0.09 -1.77 3.30 -9.89 -0.03 -1.81 16 3 H 0.11 1.74 7.71 -2.39 -0.02 1.72 16 4 C 0.10 1.55 6.47 86.54 0.56 2.11 16 5 N -0.62 -15.39 3.32 -807.96 -2.68 -18.07 16 6 C 0.53 14.07 7.91 87.66 0.69 14.76 16 7 O -0.59 -21.94 16.30 -3.03 -0.05 -21.99 16 8 C -0.09 -1.49 4.40 29.10 0.13 -1.36 16 9 C -0.03 -0.52 4.41 -19.65 -0.09 -0.61 16 10 C -0.15 -2.29 9.80 22.36 0.22 -2.07 16 11 C 0.10 1.58 11.18 84.67 0.95 2.53 16 12 N -0.49 -10.51 10.36 -195.75 -2.03 -12.53 16 13 C 0.10 2.13 10.99 84.72 0.93 3.06 16 14 C -0.09 -1.94 6.34 22.42 0.14 -1.79 16 15 Cl -0.06 -1.19 27.58 -2.72 -0.08 -1.26 16 16 C 0.12 4.03 6.34 86.54 0.55 4.58 16 17 C -0.09 -2.85 2.76 -9.89 -0.03 -2.87 16 18 H 0.06 2.11 7.71 -2.39 -0.02 2.09 16 19 C 0.16 6.09 5.37 86.38 0.46 6.56 16 20 N -0.75 -38.07 5.46 -343.45 -1.87 -39.94 16 21 C -0.24 -13.40 9.99 84.04 0.84 -12.56 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.32 13.06 21.65 0.28 -61.03 16 25 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.93 7.02 -2.39 -0.02 0.92 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.13 1.60 7.05 -2.39 -0.02 1.58 16 35 H 0.15 1.15 8.07 -2.39 -0.02 1.13 16 36 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.07 2.33 7.78 -2.39 -0.02 2.31 16 40 H 0.04 1.68 7.88 -2.39 -0.02 1.67 16 41 H 0.03 1.11 8.02 -2.39 -0.02 1.10 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.37 20.63 7.56 -92.71 -0.70 19.93 16 44 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.45 380.46 2.35 -77.10 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.31 Total: 24.49 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.43 Total: 4.60 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -6.30 Total: -131.58 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -79.45 2.35 -77.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106667174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -79.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds