Wall clock time and date at job start Tue Mar 31 2020 20:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.65492 * 2 1 4 4 C 1.54594 * 110.99181 * 236.84250 * 2 1 3 5 5 N 1.48112 * 103.42747 * 204.37376 * 4 2 1 6 6 C 1.34777 * 127.03548 * 219.28982 * 5 4 2 7 7 O 1.21353 * 119.99804 * 179.68548 * 6 5 4 8 8 C 1.49445 * 120.00110 * 359.67759 * 6 5 4 9 9 O 1.21353 * 119.99618 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00114 * 180.02562 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27895 * 10 8 6 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 F 1.39898 * 109.47563 * 59.99365 * 12 11 10 14 14 F 1.39903 * 109.47538 * 179.97438 * 12 11 10 15 15 F 1.39907 * 109.46837 * 299.99561 * 12 11 10 16 16 C 1.47488 * 105.92884 * 39.02010 * 5 4 2 17 17 C 1.54002 * 107.08712 * 334.78272 * 16 5 4 18 18 H 1.08998 * 110.32662 * 120.19843 * 17 16 5 19 19 C 1.52997 * 110.32680 * 242.30739 * 17 16 5 20 20 N 1.46500 * 109.47526 * 293.54995 * 19 17 16 21 21 C 1.36931 * 120.00424 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00015 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00445 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00574 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46494 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47012 * 119.99952 * 25 23 21 28 28 H 1.48500 * 109.47316 * 240.00504 * 25 23 21 29 29 H 1.08996 * 109.47067 * 296.80881 * 1 2 3 30 30 H 1.09005 * 109.47209 * 56.80842 * 1 2 3 31 31 H 1.09002 * 109.46987 * 176.80938 * 1 2 3 32 32 H 1.08996 * 110.61667 * 85.85828 * 4 2 1 33 33 H 1.09002 * 110.54552 * 322.85371 * 4 2 1 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 36 36 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 37 37 H 1.09001 * 109.90970 * 94.14600 * 16 5 4 38 38 H 1.09006 * 109.91654 * 215.22358 * 16 5 4 39 39 H 1.09010 * 109.46972 * 53.54609 * 19 17 16 40 40 H 1.08998 * 109.46998 * 173.54532 * 19 17 16 41 41 H 0.97002 * 119.99723 * 359.97438 * 20 19 17 42 42 H 0.96998 * 120.00411 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7894 -1.2083 5 7 3.4321 -1.2057 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.6033 -1.6002 -0.9930 8 6 4.5236 -0.8362 -2.9347 9 8 3.4797 -0.4762 -3.4380 10 7 5.6507 -0.8715 -3.6729 11 6 5.6168 -0.4694 -5.0812 12 6 7.0186 -0.5951 -5.6813 13 9 7.4497 -1.9225 -5.5855 14 9 6.9862 -0.2116 -7.0263 15 9 7.9017 0.2337 -4.9808 16 6 3.2903 -1.5680 0.6642 17 6 2.0775 -0.7915 1.2101 18 1 1.3221 -1.4829 1.5835 19 6 2.5153 0.1659 2.3202 20 7 2.9826 -0.6056 3.4746 21 6 3.4277 0.0417 4.5961 22 1 3.4339 1.1212 4.6299 23 6 3.8699 -0.6894 5.6901 24 7 3.8619 -2.0049 5.6492 25 14 4.4778 0.1937 7.2198 26 1 4.3862 1.6614 7.0132 27 1 3.6393 -0.1954 8.3820 28 1 5.8904 -0.1828 7.4804 29 1 -0.3633 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 2.1525 -0.1480 -2.0869 33 1 1.4612 -1.6602 -1.4142 34 1 6.4852 -1.1590 -3.2705 35 1 4.9288 -1.1151 -5.6269 36 1 5.2811 0.5648 -5.1558 37 1 3.1179 -2.6401 0.7588 38 1 4.1909 -1.2874 1.2104 39 1 3.3238 0.7997 1.9555 40 1 1.6712 0.7885 2.6169 41 1 2.9767 -1.5752 3.4444 42 1 4.1713 -2.5159 6.4134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106813253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:44 Heat of formation + Delta-G solvation = -203.236312 kcal Electronic energy + Delta-G solvation = -29384.607317 eV Core-core repulsion = 24564.339282 eV Total energy + Delta-G solvation = -4820.268035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.69455 -48.21157 -48.15890 -41.01574 -39.28584 -37.93622 -35.83675 -34.60957 -32.89103 -31.42845 -30.25422 -29.20469 -26.74090 -26.04325 -24.58868 -23.50014 -22.67160 -21.10723 -20.69166 -19.69792 -19.16501 -18.98784 -18.65065 -17.31564 -17.24248 -16.91991 -16.45983 -15.97163 -15.56115 -15.16293 -14.99720 -14.79673 -14.70466 -14.58403 -14.32376 -14.29896 -14.21479 -14.02860 -13.64386 -13.47921 -13.31624 -13.08119 -12.79376 -12.64666 -12.53527 -12.16851 -11.91308 -11.52465 -11.44647 -11.07180 -10.89215 -10.64110 -10.46076 -10.32366 -10.02754 -9.97673 -9.72212 -9.65141 -8.89926 -8.77348 -6.93481 -5.76778 -3.05814 1.15178 1.66513 2.13450 2.97403 3.05771 3.08002 3.41200 3.43985 3.49569 3.51801 3.65840 4.02019 4.48924 4.53596 4.61605 4.61639 4.79661 4.90102 5.30279 5.35499 5.41793 5.52821 5.57885 5.65255 5.73998 5.83664 5.91311 6.02319 6.11037 6.12646 6.20468 6.36121 6.41208 6.48259 6.69752 6.82762 7.20507 7.34865 7.70543 7.78417 8.41732 9.53228 10.09431 10.44018 11.46070 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002414 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.961335 B =11595.566237 C =12856.895576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.090 3.910 5 N -0.585 5.585 6 C 0.521 3.479 7 O -0.515 6.515 8 C 0.525 3.475 9 O -0.507 6.507 10 N -0.706 5.706 11 C 0.077 3.923 12 C 0.449 3.551 13 F -0.175 7.175 14 F -0.172 7.172 15 F -0.175 7.175 16 C 0.109 3.891 17 C -0.103 4.103 18 H 0.090 0.910 19 C 0.162 3.838 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.422 0.578 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.020 0.980 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 2.361 -26.146 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.032 4.032 5 N -0.318 5.318 6 C 0.303 3.697 7 O -0.392 6.392 8 C 0.306 3.694 9 O -0.381 6.381 10 N -0.363 5.363 11 C -0.048 4.048 12 C 0.394 3.606 13 F -0.157 7.157 14 F -0.153 7.153 15 F -0.156 7.156 16 C -0.012 4.012 17 C -0.123 4.123 18 H 0.108 0.892 19 C 0.035 3.965 20 N -0.377 5.377 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.260 0.740 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.843 2.544 -26.183 26.320 hybrid contribution 1.026 -0.081 0.946 1.398 sum 0.183 2.463 -25.237 25.358 Atomic orbital electron populations 1.21711 0.93645 1.02070 1.02180 1.22263 0.96289 0.99790 0.93781 0.89757 1.23096 0.81508 0.99710 0.98927 1.48599 1.08166 1.62563 1.12442 1.19250 0.83591 0.80764 0.86112 1.90831 1.29409 1.46721 1.72196 1.20252 0.83327 0.78141 0.87632 1.90693 1.29627 1.45202 1.72597 1.45384 1.13265 1.68006 1.09646 1.22548 0.92144 1.06515 0.83600 1.20453 0.88868 0.74279 0.76951 1.93254 1.91434 1.35191 1.95812 1.93238 1.96754 1.91050 1.34282 1.93262 1.71757 1.72086 1.78516 1.22393 1.00900 0.99372 0.78519 1.22419 0.96354 0.98092 0.95394 0.89213 1.20706 0.96251 0.92795 0.86785 1.42376 1.77169 1.05696 1.12483 1.19246 1.34591 0.91268 0.91945 0.91166 1.24740 1.02217 0.95476 0.98494 1.69662 1.53382 1.04136 1.30921 0.86123 0.78196 0.78582 0.83323 1.20577 1.21876 1.21845 0.91728 0.92547 0.92397 0.87215 0.90595 0.74027 0.86126 0.86108 0.90947 0.88587 0.96260 0.95848 0.78256 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.17 37.16 0.34 -1.02 16 2 C -0.10 -1.20 3.19 -88.93 -0.28 -1.49 16 3 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 4 C 0.09 1.03 6.05 -2.32 -0.01 1.02 16 5 N -0.58 -8.23 3.29 -170.49 -0.56 -8.79 16 6 C 0.52 7.47 7.96 -11.59 -0.09 7.37 16 7 O -0.52 -8.81 16.81 5.49 0.09 -8.72 16 8 C 0.52 5.96 7.87 -11.59 -0.09 5.87 16 9 O -0.51 -6.03 13.70 5.49 0.08 -5.95 16 10 N -0.71 -6.13 5.41 -60.73 -0.33 -6.45 16 11 C 0.08 0.45 5.64 -4.04 -0.02 0.43 16 12 C 0.45 2.91 3.11 37.16 0.12 3.02 16 13 F -0.18 -1.34 17.18 2.25 0.04 -1.30 16 14 F -0.17 -1.14 17.32 2.25 0.04 -1.10 16 15 F -0.17 -1.37 17.18 2.25 0.04 -1.33 16 16 C 0.11 1.74 6.31 -2.98 -0.02 1.72 16 17 C -0.10 -1.55 2.64 -89.25 -0.24 -1.79 16 18 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 19 C 0.16 3.14 5.35 -4.04 -0.02 3.12 16 20 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 21 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 25 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.11 1.24 5.45 -51.93 -0.28 0.96 16 33 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 34 H 0.42 3.65 7.83 -40.82 -0.32 3.33 16 35 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.86 7.49 -51.93 -0.39 1.47 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.38 9.94 7.51 -40.82 -0.31 9.63 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -32.65 366.17 -5.73 -38.38 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.46 Total: 7.22 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.57 Total: 10.96 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.48 Total: -61.16 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.17 Total: -14.67 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.12 Total: -3.74 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.65 -5.73 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106813253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.857 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds