Wall clock time and date at job start Tue Mar 31 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.65492 * 2 1 4 4 C 1.54594 * 110.99181 * 236.84250 * 2 1 3 5 5 N 1.48112 * 103.42747 * 204.37376 * 4 2 1 6 6 C 1.34777 * 127.03548 * 219.28982 * 5 4 2 7 7 O 1.21353 * 119.99804 * 179.68548 * 6 5 4 8 8 C 1.49445 * 120.00110 * 359.67759 * 6 5 4 9 9 O 1.21353 * 119.99618 * 0.02562 * 8 6 5 10 10 N 1.34777 * 120.00114 * 180.02562 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27895 * 10 8 6 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 F 1.39898 * 109.47563 * 59.99365 * 12 11 10 14 14 F 1.39903 * 109.47538 * 179.97438 * 12 11 10 15 15 F 1.39907 * 109.46837 * 299.99561 * 12 11 10 16 16 C 1.47488 * 105.92884 * 39.02010 * 5 4 2 17 17 C 1.54002 * 107.08712 * 334.78272 * 16 5 4 18 18 H 1.08998 * 110.32662 * 120.19843 * 17 16 5 19 19 C 1.52997 * 110.32680 * 242.30739 * 17 16 5 20 20 N 1.46500 * 109.47526 * 293.54995 * 19 17 16 21 21 C 1.36931 * 120.00424 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00015 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00445 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00574 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46494 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47012 * 119.99952 * 25 23 21 28 28 H 1.48500 * 109.47316 * 240.00504 * 25 23 21 29 29 H 1.08996 * 109.47067 * 296.80881 * 1 2 3 30 30 H 1.09005 * 109.47209 * 56.80842 * 1 2 3 31 31 H 1.09002 * 109.46987 * 176.80938 * 1 2 3 32 32 H 1.08996 * 110.61667 * 85.85828 * 4 2 1 33 33 H 1.09002 * 110.54552 * 322.85371 * 4 2 1 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 36 36 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 37 37 H 1.09001 * 109.90970 * 94.14600 * 16 5 4 38 38 H 1.09006 * 109.91654 * 215.22358 * 16 5 4 39 39 H 1.09010 * 109.46972 * 53.54609 * 19 17 16 40 40 H 1.08998 * 109.46998 * 173.54532 * 19 17 16 41 41 H 0.97002 * 119.99723 * 359.97438 * 20 19 17 42 42 H 0.96998 * 120.00411 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7894 -1.2083 5 7 3.4321 -1.2057 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.6033 -1.6002 -0.9930 8 6 4.5236 -0.8362 -2.9347 9 8 3.4797 -0.4762 -3.4380 10 7 5.6507 -0.8715 -3.6729 11 6 5.6168 -0.4694 -5.0812 12 6 7.0186 -0.5951 -5.6813 13 9 7.4497 -1.9225 -5.5855 14 9 6.9862 -0.2116 -7.0263 15 9 7.9017 0.2337 -4.9808 16 6 3.2903 -1.5680 0.6642 17 6 2.0775 -0.7915 1.2101 18 1 1.3221 -1.4829 1.5835 19 6 2.5153 0.1659 2.3202 20 7 2.9826 -0.6056 3.4746 21 6 3.4277 0.0417 4.5961 22 1 3.4339 1.1212 4.6299 23 6 3.8699 -0.6894 5.6901 24 7 3.8619 -2.0049 5.6492 25 14 4.4778 0.1937 7.2198 26 1 4.3862 1.6614 7.0132 27 1 3.6393 -0.1954 8.3820 28 1 5.8904 -0.1828 7.4804 29 1 -0.3633 0.4635 0.9172 30 1 -0.3634 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 2.1525 -0.1480 -2.0869 33 1 1.4612 -1.6602 -1.4142 34 1 6.4852 -1.1590 -3.2705 35 1 4.9288 -1.1151 -5.6269 36 1 5.2811 0.5648 -5.1558 37 1 3.1179 -2.6401 0.7588 38 1 4.1909 -1.2874 1.2104 39 1 3.3238 0.7997 1.9555 40 1 1.6712 0.7885 2.6169 41 1 2.9767 -1.5752 3.4444 42 1 4.1713 -2.5159 6.4134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106813253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:43 Heat of formation + Delta-G solvation = -226.606077 kcal Electronic energy + Delta-G solvation = -29385.620706 eV Core-core repulsion = 24564.339282 eV Total energy + Delta-G solvation = -4821.281424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.24961 -48.75554 -48.73851 -42.02367 -40.31610 -39.10793 -36.75804 -36.23955 -34.18542 -33.09933 -30.98636 -30.65914 -27.93106 -27.22659 -25.79440 -24.84305 -23.70596 -22.34657 -21.59624 -20.91092 -19.71745 -19.59275 -19.57094 -19.08688 -18.15908 -17.97513 -17.48643 -16.93730 -16.68834 -16.43631 -15.89961 -15.69696 -15.51377 -15.41247 -15.26892 -15.15282 -15.14318 -14.94151 -14.86721 -14.84087 -14.41516 -14.11640 -14.01484 -13.70353 -13.51572 -13.22773 -13.07292 -12.95471 -12.78815 -12.58974 -12.53539 -12.10416 -11.95470 -11.87865 -11.49227 -11.37537 -10.96714 -10.75316 -10.71246 -9.94308 -9.00733 -7.95927 -5.24565 0.15648 0.83953 1.46515 1.47525 1.54309 1.57300 1.95287 2.15248 2.55100 2.56247 2.89187 2.98414 3.19052 3.37692 3.50444 3.59651 3.75920 4.05266 4.16797 4.18377 4.23608 4.42464 4.50472 4.53934 4.63241 4.71892 4.77477 4.86410 4.92862 4.96945 5.07680 5.21677 5.25345 5.36760 5.48544 5.54575 5.64598 6.18168 6.26582 6.38753 6.71145 7.33216 8.08150 8.31435 9.27674 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002414 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.961335 B =11595.566237 C =12856.895576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.081 0.919 4 C 0.095 3.905 5 N -0.587 5.587 6 C 0.512 3.488 7 O -0.553 6.553 8 C 0.535 3.465 9 O -0.510 6.510 10 N -0.698 5.698 11 C 0.079 3.921 12 C 0.455 3.545 13 F -0.183 7.183 14 F -0.170 7.170 15 F -0.184 7.184 16 C 0.113 3.887 17 C -0.093 4.093 18 H 0.096 0.904 19 C 0.163 3.837 20 N -0.744 5.744 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.972 3.028 26 H -0.267 1.267 27 H -0.291 1.291 28 H -0.295 1.295 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.422 0.578 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.009 0.991 40 H 0.031 0.969 41 H 0.375 0.625 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 3.410 -27.940 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.026 4.026 5 N -0.319 5.319 6 C 0.295 3.705 7 O -0.432 6.432 8 C 0.316 3.684 9 O -0.385 6.385 10 N -0.353 5.353 11 C -0.045 4.045 12 C 0.400 3.600 13 F -0.164 7.164 14 F -0.152 7.152 15 F -0.165 7.165 16 C -0.009 4.009 17 C -0.112 4.112 18 H 0.114 0.886 19 C 0.037 3.963 20 N -0.387 5.387 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.801 3.199 26 H -0.191 1.191 27 H -0.218 1.218 28 H -0.223 1.223 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.259 0.741 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.049 0.951 41 H 0.207 0.793 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.111 3.639 -28.036 28.350 hybrid contribution 1.449 -0.377 1.420 2.064 sum -0.663 3.261 -26.615 26.823 Atomic orbital electron populations 1.21696 0.91492 1.03086 1.02861 1.22247 0.97917 0.99033 0.91953 0.90074 1.23253 0.80096 1.00519 0.98737 1.48713 1.09358 1.62222 1.11608 1.19919 0.83000 0.79996 0.87545 1.90807 1.30717 1.48351 1.73327 1.19525 0.84015 0.78614 0.86235 1.90688 1.29763 1.45850 1.72178 1.45347 1.12389 1.66895 1.10705 1.22786 0.91990 1.08037 0.81706 1.20485 0.88876 0.73745 0.76901 1.93243 1.91579 1.35780 1.95846 1.93243 1.96733 1.91003 1.34183 1.93249 1.72212 1.72337 1.78748 1.22162 0.99386 0.99647 0.79701 1.22292 0.96037 0.97621 0.95263 0.88624 1.20824 0.95749 0.93289 0.86444 1.42576 1.77203 1.05614 1.13324 1.19634 1.33474 0.91630 0.92850 0.90822 1.25550 1.03323 0.96239 1.01610 1.69811 1.54947 1.05521 1.31592 0.85100 0.77061 0.78179 0.79587 1.19095 1.21767 1.22273 0.92384 0.90363 0.91438 0.86285 0.88696 0.74052 0.84122 0.84327 0.90689 0.92743 0.97289 0.95101 0.79285 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.17 71.98 0.66 -1.56 16 2 C -0.09 -1.99 3.19 -9.70 -0.03 -2.02 16 3 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 4 C 0.09 1.96 6.05 86.61 0.52 2.48 16 5 N -0.59 -16.22 3.29 -811.66 -2.67 -18.89 16 6 C 0.51 14.60 7.96 87.27 0.69 15.29 16 7 O -0.55 -19.49 16.81 -3.26 -0.05 -19.55 16 8 C 0.54 11.34 7.87 87.27 0.69 12.02 16 9 O -0.51 -10.78 13.70 -3.26 -0.04 -10.83 16 10 N -0.70 -11.06 5.41 -464.42 -2.51 -13.57 16 11 C 0.08 0.73 5.64 86.38 0.49 1.22 16 12 C 0.45 5.14 3.11 71.98 0.22 5.37 16 13 F -0.18 -2.58 17.18 44.97 0.77 -1.81 16 14 F -0.17 -1.95 17.32 44.97 0.78 -1.17 16 15 F -0.18 -2.69 17.18 44.97 0.77 -1.91 16 16 C 0.11 3.68 6.31 86.53 0.55 4.23 16 17 C -0.09 -2.75 2.64 -9.91 -0.03 -2.77 16 18 H 0.10 2.76 7.85 -2.39 -0.02 2.74 16 19 C 0.16 6.36 5.35 86.38 0.46 6.83 16 20 N -0.74 -37.64 5.33 -343.45 -1.83 -39.47 16 21 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 25 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 32 H 0.12 2.34 5.45 -2.39 -0.01 2.33 16 33 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 34 H 0.42 6.99 7.83 -92.71 -0.73 6.26 16 35 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.23 7.49 -2.38 -0.02 2.21 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.38 20.04 7.51 -92.71 -0.70 19.34 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.19 366.17 2.71 -68.48 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.34 Total: 25.09 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 5.53 Total: 24.30 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.73 Total: -131.34 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.10 Total: -30.37 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 2.32 Total: -4.89 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -71.19 2.71 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106813253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.125 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds