Wall clock time and date at job start Tue Mar 31 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00196 * 2 1 4 4 N 1.34781 * 119.99827 * 180.02562 * 2 1 3 5 5 C 1.46494 * 119.99825 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47590 * 325.00530 * 5 4 2 7 7 C 1.53010 * 109.46887 * 85.00203 * 5 4 2 8 8 C 1.50699 * 109.47304 * 205.00068 * 5 4 2 9 9 O 1.21286 * 119.99744 * 334.14510 * 8 5 4 10 10 N 1.34769 * 120.00324 * 154.14597 * 8 5 4 11 11 C 1.48153 * 127.83721 * 355.04138 * 10 8 5 12 12 C 1.54389 * 104.61804 * 219.60592 * 11 10 8 13 13 H 1.09001 * 110.34226 * 95.00146 * 12 11 10 14 14 C 1.52991 * 110.34594 * 217.26410 * 12 11 10 15 15 F 1.39895 * 109.47673 * 175.53755 * 14 12 11 16 16 F 1.39901 * 109.46798 * 295.53939 * 14 12 11 17 17 F 1.39904 * 109.47047 * 55.53384 * 14 12 11 18 18 C 1.54293 * 104.96005 * 336.13492 * 12 11 10 19 19 H 1.08996 * 110.43039 * 241.08435 * 18 12 11 20 20 N 1.46498 * 110.34514 * 118.86890 * 18 12 11 21 21 C 1.36936 * 119.99890 * 158.00679 * 20 18 12 22 22 H 1.07997 * 119.99912 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99636 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99951 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00202 * 0.28029 * 23 21 20 26 26 H 1.48497 * 109.46888 * 269.71934 * 25 23 21 27 27 H 1.48499 * 109.47003 * 29.72134 * 25 23 21 28 28 H 1.48502 * 109.47006 * 149.72291 * 25 23 21 29 29 C 1.48152 * 127.84098 * 175.06874 * 10 8 5 30 30 H 1.08995 * 109.47598 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47017 * 300.00239 * 1 2 3 32 32 H 1.09000 * 109.46977 * 59.99732 * 1 2 3 33 33 H 0.96995 * 119.99792 * 0.02562 * 4 2 1 34 34 H 1.09005 * 109.46768 * 176.24368 * 7 5 4 35 35 H 1.08993 * 109.46935 * 296.24315 * 7 5 4 36 36 H 1.08994 * 109.46861 * 56.24528 * 7 5 4 37 37 H 1.08993 * 110.40398 * 338.38889 * 11 10 8 38 38 H 1.08997 * 110.40443 * 100.70650 * 11 10 8 39 39 H 0.97000 * 119.99600 * 338.01248 * 20 18 12 40 40 H 0.96991 * 120.00238 * 180.02562 * 24 23 21 41 41 H 1.08994 * 110.40316 * 21.60400 * 29 10 8 42 42 H 1.09008 * 110.50153 * 259.22849 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0090 -0.3252 -0.5904 7 6 4.1564 -1.0419 1.4359 8 6 4.1480 -2.4548 -0.6020 9 8 3.4589 -3.4521 -0.5616 10 7 5.3626 -2.4981 -1.1843 11 6 6.2982 -1.3737 -1.4197 12 6 6.8916 -1.6469 -2.8186 13 1 6.3334 -1.1022 -3.5800 14 6 8.3691 -1.2517 -2.8560 15 9 8.9138 -1.6001 -4.0966 16 9 8.4874 0.1292 -2.6661 17 9 9.0573 -1.9229 -1.8395 18 6 6.7378 -3.1681 -3.0263 19 1 7.7141 -3.6350 -3.1559 20 7 5.8860 -3.4401 -4.1868 21 6 5.9662 -4.6481 -4.8267 22 1 6.6570 -5.4003 -4.4757 23 6 5.1587 -4.9060 -5.9260 24 7 5.2361 -6.0668 -6.5415 25 14 3.9684 -3.6024 -6.5369 26 1 2.6593 -3.7695 -5.8561 27 1 4.5140 -2.2543 -6.2369 28 1 3.7856 -3.7474 -8.0035 29 6 6.0650 -3.6807 -1.7348 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0013 34 1 5.2443 -1.1089 1.4420 35 1 3.8492 -0.0808 1.8480 36 1 3.7393 -1.8468 2.0411 37 1 5.7615 -0.4251 -1.4132 38 1 7.0849 -1.3697 -0.6653 39 1 5.2654 -2.7645 -4.5018 40 1 4.6722 -6.2470 -7.3098 41 1 5.3524 -4.4724 -1.9658 42 1 6.8164 -4.0400 -1.0315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112039754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:15 Heat of formation + Delta-G solvation = -225.871956 kcal Electronic energy + Delta-G solvation = -31008.836302 eV Core-core repulsion = 26187.586711 eV Total energy + Delta-G solvation = -4821.249590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -51.11152 -48.57709 -48.57225 -41.65749 -40.47349 -39.12100 -36.13586 -36.01491 -33.84559 -32.66009 -32.33824 -30.01371 -29.42824 -27.05553 -26.24333 -24.91523 -23.50767 -21.96380 -21.51348 -20.80673 -19.93657 -19.53049 -19.23602 -18.69518 -18.41649 -17.72515 -17.36487 -16.70626 -16.66749 -16.20378 -15.99867 -15.93842 -15.47742 -15.41784 -14.99841 -14.97430 -14.86469 -14.80930 -14.70770 -14.67798 -14.48680 -14.12302 -13.93470 -13.65096 -13.42331 -13.26205 -13.11920 -13.03923 -12.98840 -12.74239 -12.69749 -12.49992 -12.40366 -12.05396 -11.85149 -11.22461 -11.10344 -11.00337 -10.30774 -10.06925 -9.37984 -8.07122 -5.43126 1.26130 1.31321 1.35807 1.41565 1.50849 1.57875 1.75680 2.28954 2.42548 2.70097 2.75500 2.89899 3.21043 3.26466 3.49616 3.59108 3.68741 3.80931 3.91717 3.99136 4.02513 4.17506 4.37551 4.40942 4.46282 4.57942 4.61075 4.65113 4.69318 4.74016 4.94544 5.03097 5.08736 5.11032 5.27205 5.70392 6.14637 6.32392 6.43248 6.87585 6.98656 7.12381 7.70720 7.87512 9.13549 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.004901 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.967623 B = 5711.546861 C = 7629.940659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.588 6.588 4 N -0.715 5.715 5 C 0.129 3.871 6 H 0.112 0.888 7 C -0.147 4.147 8 C 0.531 3.469 9 O -0.569 6.569 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.162 4.162 13 H 0.132 0.868 14 C 0.473 3.527 15 F -0.187 7.187 16 F -0.176 7.176 17 F -0.176 7.176 18 C 0.177 3.823 19 H 0.081 0.919 20 N -0.738 5.738 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.053 4.053 24 N -0.977 5.977 25 Si 0.945 3.055 26 H -0.287 1.287 27 H -0.249 1.249 28 H -0.295 1.295 29 C 0.087 3.913 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.061 0.939 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 15.577 16.945 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.301 3.699 3 O -0.468 6.468 4 N -0.370 5.370 5 C 0.020 3.980 6 H 0.129 0.871 7 C -0.205 4.205 8 C 0.320 3.680 9 O -0.448 6.448 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.183 4.183 13 H 0.150 0.850 14 C 0.418 3.582 15 F -0.169 7.169 16 F -0.157 7.157 17 F -0.157 7.157 18 C 0.066 3.934 19 H 0.099 0.901 20 N -0.380 5.380 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.245 4.245 24 N -0.627 5.627 25 Si 0.773 3.227 26 H -0.214 1.214 27 H -0.174 1.174 28 H -0.221 1.221 29 C -0.038 4.038 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.326 15.572 16.946 23.052 hybrid contribution -0.634 -0.362 -1.108 1.328 sum -1.960 15.210 15.837 22.046 Atomic orbital electron populations 1.21890 0.88069 1.06121 1.06353 1.21548 0.92248 0.82288 0.73831 1.90695 1.71770 1.32463 1.51879 1.46110 1.05722 1.10207 1.74938 1.20822 0.82660 0.94744 0.99741 0.87058 1.22023 1.02811 1.03492 0.92214 1.20616 0.79474 0.90613 0.77317 1.90719 1.55838 1.38239 1.59969 1.48815 1.16490 1.10953 1.57912 1.22624 0.94066 0.91299 0.93342 1.23761 0.91036 1.00181 1.03306 0.85049 1.20016 0.90004 0.74723 0.73432 1.93225 1.87895 1.91936 1.43796 1.93204 1.96822 1.30760 1.94903 1.93186 1.82079 1.80338 1.60147 1.21170 0.94950 0.90564 0.86671 0.90126 1.42692 1.46554 1.15534 1.33268 1.18963 1.17689 0.91759 1.07865 0.91587 1.25379 1.01762 0.98610 0.98752 1.69853 1.44138 1.24481 1.24183 0.85576 0.79449 0.80512 0.77212 1.21355 1.17380 1.22131 1.23215 0.96301 0.88980 0.95322 0.88529 0.87088 0.87908 0.74781 0.89227 0.90496 0.91643 0.86196 0.86564 0.80073 0.93276 0.91987 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.39 71.24 0.74 -1.20 16 2 C 0.51 10.44 7.90 87.66 0.69 11.13 16 3 O -0.59 -16.19 16.76 -3.03 -0.05 -16.24 16 4 N -0.72 -14.65 5.05 -446.08 -2.25 -16.90 16 5 C 0.13 2.70 2.60 44.25 0.12 2.82 16 6 H 0.11 2.27 6.05 -2.38 -0.01 2.25 16 7 C -0.15 -2.38 9.47 71.99 0.68 -1.70 16 8 C 0.53 14.51 7.11 87.66 0.62 15.13 16 9 O -0.57 -20.14 16.27 -3.05 -0.05 -20.19 16 10 N -0.61 -15.49 3.32 -807.95 -2.68 -18.17 16 11 C 0.11 1.98 6.22 86.53 0.54 2.52 16 12 C -0.16 -3.83 2.84 -9.89 -0.03 -3.86 16 13 H 0.13 3.09 7.64 -2.39 -0.02 3.07 16 14 C 0.47 10.86 2.53 71.98 0.18 11.04 16 15 F -0.19 -5.42 16.93 44.97 0.76 -4.66 16 16 F -0.18 -3.60 17.17 44.97 0.77 -2.83 16 17 F -0.18 -3.85 16.05 44.97 0.72 -3.13 16 18 C 0.18 5.75 2.99 45.90 0.14 5.88 16 19 H 0.08 2.73 7.37 -2.39 -0.02 2.72 16 20 N -0.74 -31.67 4.94 -318.65 -1.57 -33.24 16 21 C -0.23 -12.56 10.45 84.03 0.88 -11.68 16 22 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 23 C -0.05 -3.03 5.50 84.86 0.47 -2.57 16 24 N -0.98 -61.51 13.97 21.65 0.30 -61.20 16 25 Si 0.94 44.80 27.74 68.60 1.90 46.70 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 27 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 28 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 29 C 0.09 2.67 6.78 86.53 0.59 3.25 16 30 H 0.10 0.79 7.91 -2.39 -0.02 0.77 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.41 8.17 7.63 -92.71 -0.71 7.46 16 34 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.12 1.62 6.61 -2.39 -0.02 1.61 16 38 H 0.12 1.55 7.22 -2.39 -0.02 1.53 16 39 H 0.37 15.34 5.36 -92.71 -0.50 14.85 16 40 H 0.26 15.59 8.31 -92.72 -0.77 14.82 16 41 H 0.06 2.46 7.76 -2.39 -0.02 2.44 16 42 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -75.33 362.48 3.29 -72.04 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.17 Total: 27.05 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 5.61 Total: 30.78 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -6.21 Total: -129.51 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.10 Total: -36.43 kcal Atomic # 9 Polarization: -12.87 SS G_CDS: 2.26 Total: -10.62 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Total: -75.33 3.29 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112039754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.835 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds