Wall clock time and date at job start Tue Mar 31 2020 19:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.47244 * 2 1 4 4 O 1.21277 * 119.99499 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99936 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99650 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.46858 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00374 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.48141 * 127.84231 * 180.02562 * 9 7 6 11 11 C 1.54387 * 104.62167 * 219.58762 * 10 9 7 12 12 H 1.09003 * 110.34032 * 95.11136 * 11 10 9 13 13 C 1.52997 * 110.34685 * 217.26341 * 11 10 9 14 14 F 1.39903 * 109.46906 * 58.54634 * 13 11 10 15 15 F 1.39894 * 109.47276 * 178.54630 * 13 11 10 16 16 F 1.39902 * 109.47106 * 298.55236 * 13 11 10 17 17 C 1.54590 * 104.99065 * 336.14662 * 11 10 9 18 18 H 1.09000 * 110.44185 * 241.14371 * 17 11 10 19 19 N 1.46503 * 110.38870 * 118.78993 * 17 11 10 20 20 C 1.36940 * 120.00013 * 158.16282 * 19 17 11 21 21 H 1.08003 * 119.99490 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00118 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00066 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46686 * 89.99999 * 24 22 20 26 26 H 1.48498 * 109.46780 * 209.99711 * 24 22 20 27 27 H 1.48494 * 109.46946 * 330.00056 * 24 22 20 28 28 C 1.48151 * 127.83369 * 0.02712 * 9 7 6 29 29 H 1.08998 * 109.46905 * 59.99772 * 1 2 3 30 30 H 1.08996 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47119 * 299.99825 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00175 * 2 1 3 33 33 H 1.09002 * 109.47476 * 119.99758 * 2 1 3 34 34 H 0.96999 * 120.00311 * 0.02562 * 5 3 2 35 35 H 1.08998 * 109.47310 * 60.00502 * 6 5 3 36 36 H 1.08998 * 109.46940 * 299.99567 * 6 5 3 37 37 H 1.09001 * 110.41010 * 338.37809 * 10 9 7 38 38 H 1.09006 * 110.40650 * 100.68851 * 10 9 7 39 39 H 0.96996 * 119.99890 * 338.16684 * 19 17 11 40 40 H 0.96994 * 120.00310 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.40666 * 259.19717 * 28 9 7 42 42 H 1.09002 * 110.40751 * 21.51159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0483 -0.0013 8 8 5.9592 1.9980 -0.0022 9 7 6.0267 4.2155 -0.0016 10 6 7.4942 4.4176 -0.0035 11 6 7.7245 5.6108 0.9488 12 1 7.9602 5.2550 1.9518 13 6 8.8519 6.5013 0.4228 14 9 8.5244 6.9610 -0.8573 15 9 9.0228 7.5930 1.2808 16 9 10.0395 5.7642 0.3638 17 6 6.3860 6.3841 0.9519 18 1 6.5311 7.3977 0.5783 19 7 5.8169 6.4142 2.3015 20 6 4.9099 7.3824 2.6408 21 1 4.6137 8.1235 1.9132 22 6 4.3711 7.4112 3.9198 23 7 3.4990 8.3415 4.2456 24 14 4.8829 6.1288 5.1779 25 1 6.0637 6.6198 5.9328 26 1 3.7608 5.8834 6.1190 27 1 5.2311 4.8641 4.4820 28 6 5.4678 5.5876 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9877 0.9299 -0.0013 35 1 3.4829 3.5617 0.8905 36 1 3.4820 3.5627 -0.8895 37 1 8.0008 3.5284 0.3719 38 1 7.8436 4.6577 -1.0077 39 1 6.0827 5.7483 2.9549 40 1 3.1228 8.3619 5.1394 41 1 5.5004 6.0123 -1.0035 42 1 4.4447 5.5808 0.3758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112072208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:19 Heat of formation + Delta-G solvation = -205.527570 kcal Electronic energy + Delta-G solvation = -30398.788896 eV Core-core repulsion = 25578.421504 eV Total energy + Delta-G solvation = -4820.367392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05800 -47.56829 -47.47152 -40.39996 -39.49335 -37.90211 -34.56102 -34.29514 -32.96344 -32.31572 -31.08157 -28.48893 -28.14025 -25.65508 -24.34891 -23.76993 -22.17755 -20.65985 -20.45053 -19.66855 -18.46112 -18.31326 -18.12994 -17.58740 -17.10458 -16.62888 -16.22697 -16.05369 -15.44405 -15.12214 -14.87474 -14.50774 -14.41585 -14.23075 -14.00608 -13.92828 -13.90920 -13.66341 -13.62453 -13.41684 -13.25375 -12.95515 -12.51537 -12.47129 -12.45380 -12.17310 -11.96020 -11.91310 -11.57357 -11.33836 -11.19171 -11.03328 -10.98472 -10.34002 -10.09067 -9.98572 -9.77676 -9.34041 -9.24500 -8.81672 -7.54794 -5.95302 -3.35992 2.39083 2.49719 2.56910 2.82812 3.24770 3.25803 3.27633 3.35167 3.79772 3.86158 4.02045 4.36661 4.42292 4.59921 4.65461 4.76016 4.89769 4.90367 4.97946 5.03155 5.24200 5.25313 5.33918 5.40000 5.44823 5.47359 5.60840 5.63959 5.75663 5.76868 5.84676 6.02446 6.05468 6.19969 6.30571 7.35737 7.40303 7.73511 7.91849 8.13336 8.21300 8.95114 9.67795 9.82638 11.21566 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004234 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.405768 B = 6611.453854 C = 8860.045254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.510 3.490 4 O -0.536 6.536 5 N -0.721 5.721 6 C 0.103 3.897 7 C 0.537 3.463 8 O -0.549 6.549 9 N -0.610 5.610 10 C 0.119 3.881 11 C -0.170 4.170 12 H 0.126 0.874 13 C 0.465 3.535 14 F -0.181 7.181 15 F -0.172 7.172 16 F -0.186 7.186 17 C 0.185 3.815 18 H 0.088 0.912 19 N -0.734 5.734 20 C -0.261 4.261 21 H 0.096 0.904 22 C 0.019 3.981 23 N -0.921 5.921 24 Si 0.879 3.121 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.068 3.932 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.364 0.636 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -12.993 -10.979 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.297 3.703 4 O -0.413 6.413 5 N -0.377 5.377 6 C -0.024 4.024 7 C 0.326 3.674 8 O -0.428 6.428 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.191 4.191 12 H 0.144 0.856 13 C 0.410 3.590 14 F -0.162 7.162 15 F -0.153 7.153 16 F -0.168 7.168 17 C 0.072 3.928 18 H 0.106 0.894 19 N -0.376 5.376 20 C -0.390 4.390 21 H 0.114 0.886 22 C -0.179 4.179 23 N -0.567 5.567 24 Si 0.709 3.291 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.058 4.058 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.712 -12.722 -10.947 17.433 hybrid contribution 0.943 -0.900 1.030 1.661 sum 5.654 -13.623 -9.918 17.774 Atomic orbital electron populations 1.21537 0.92880 1.01537 1.03559 1.21611 0.98689 0.93413 1.04458 1.20816 0.81546 0.92153 0.75778 1.90746 1.55178 1.46458 1.48881 1.45773 1.07704 1.08140 1.76080 1.21030 0.90363 0.85419 1.05569 1.20072 0.89525 0.82198 0.75621 1.90671 1.70010 1.30477 1.51623 1.48730 1.06980 1.06460 1.72090 1.22139 0.82266 0.97152 0.98928 1.23937 0.95611 0.96492 1.03083 0.85562 1.20206 0.82941 0.80097 0.75718 1.93171 1.92423 1.89827 1.40818 1.93246 1.95781 1.56262 1.69986 1.93178 1.50353 1.76963 1.96289 1.21064 0.86909 0.96947 0.87831 0.89405 1.42784 1.51842 1.35169 1.07804 1.18993 1.16218 1.06048 0.97787 0.88609 1.24642 0.98350 0.97799 0.97086 1.69676 1.31997 1.34593 1.20430 0.86656 0.78238 0.81784 0.82413 1.20757 1.21419 1.20413 1.23709 1.01493 0.80079 1.00492 0.91925 0.92098 0.91813 0.88871 0.88799 0.75252 0.87472 0.88218 0.88659 0.89834 0.80195 0.92675 0.90546 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.21 6.42 -27.88 -0.18 -1.39 16 3 C 0.51 6.49 7.83 -10.98 -0.09 6.40 16 4 O -0.54 -9.02 15.98 5.56 0.09 -8.93 16 5 N -0.72 -8.76 5.53 -61.47 -0.34 -9.10 16 6 C 0.10 1.38 5.13 -5.19 -0.03 1.35 16 7 C 0.54 7.62 7.98 -10.98 -0.09 7.54 16 8 O -0.55 -8.72 15.93 5.55 0.09 -8.63 16 9 N -0.61 -8.24 3.32 -169.29 -0.56 -8.80 16 10 C 0.12 1.44 6.33 -2.41 -0.02 1.42 16 11 C -0.17 -2.26 2.84 -89.06 -0.25 -2.51 16 12 H 0.13 1.69 7.65 -51.93 -0.40 1.30 16 13 C 0.47 6.06 2.51 37.16 0.09 6.15 16 14 F -0.18 -2.29 16.05 2.25 0.04 -2.25 16 15 F -0.17 -2.60 17.07 2.25 0.04 -2.56 16 16 F -0.19 -2.31 17.11 2.25 0.04 -2.28 16 17 C 0.18 2.94 3.01 -66.36 -0.20 2.74 16 18 H 0.09 1.44 7.38 -51.93 -0.38 1.06 16 19 N -0.73 -15.11 4.95 -51.90 -0.26 -15.36 16 20 C -0.26 -6.62 10.45 -15.06 -0.16 -6.78 16 21 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 22 C 0.02 0.51 5.50 -17.43 -0.10 0.42 16 23 N -0.92 -27.36 13.97 55.49 0.78 -26.59 16 24 Si 0.88 20.91 27.74 -169.99 -4.71 16.19 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 28 C 0.07 0.94 6.62 -2.40 -0.02 0.93 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.41 4.45 7.44 -40.82 -0.30 4.14 16 35 H 0.11 1.61 7.95 -51.93 -0.41 1.19 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 38 H 0.08 0.89 7.33 -51.93 -0.38 0.51 16 39 H 0.36 7.57 5.37 -40.82 -0.22 7.35 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.58 7.22 -51.93 -0.37 1.20 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -31.89 363.70 -5.43 -37.33 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.43 Total: 10.11 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -0.68 Total: 15.39 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.38 Total: -59.85 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.89 -5.43 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112072208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.202 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds