Wall clock time and date at job start Tue Mar 31 2020 19:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.47244 * 2 1 4 4 O 1.21277 * 119.99499 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99936 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99650 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.46858 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00374 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.48141 * 127.84231 * 180.02562 * 9 7 6 11 11 C 1.54387 * 104.62167 * 219.58762 * 10 9 7 12 12 H 1.09003 * 110.34032 * 95.11136 * 11 10 9 13 13 C 1.52997 * 110.34685 * 217.26341 * 11 10 9 14 14 F 1.39903 * 109.46906 * 58.54634 * 13 11 10 15 15 F 1.39894 * 109.47276 * 178.54630 * 13 11 10 16 16 F 1.39902 * 109.47106 * 298.55236 * 13 11 10 17 17 C 1.54590 * 104.99065 * 336.14662 * 11 10 9 18 18 H 1.09000 * 110.44185 * 241.14371 * 17 11 10 19 19 N 1.46503 * 110.38870 * 118.78993 * 17 11 10 20 20 C 1.36940 * 120.00013 * 158.16282 * 19 17 11 21 21 H 1.08003 * 119.99490 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00118 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00066 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46686 * 89.99999 * 24 22 20 26 26 H 1.48498 * 109.46780 * 209.99711 * 24 22 20 27 27 H 1.48494 * 109.46946 * 330.00056 * 24 22 20 28 28 C 1.48151 * 127.83369 * 0.02712 * 9 7 6 29 29 H 1.08998 * 109.46905 * 59.99772 * 1 2 3 30 30 H 1.08996 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47119 * 299.99825 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00175 * 2 1 3 33 33 H 1.09002 * 109.47476 * 119.99758 * 2 1 3 34 34 H 0.96999 * 120.00311 * 0.02562 * 5 3 2 35 35 H 1.08998 * 109.47310 * 60.00502 * 6 5 3 36 36 H 1.08998 * 109.46940 * 299.99567 * 6 5 3 37 37 H 1.09001 * 110.41010 * 338.37809 * 10 9 7 38 38 H 1.09006 * 110.40650 * 100.68851 * 10 9 7 39 39 H 0.96996 * 119.99890 * 338.16684 * 19 17 11 40 40 H 0.96994 * 120.00310 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.40666 * 259.19717 * 28 9 7 42 42 H 1.09002 * 110.40751 * 21.51159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0483 -0.0013 8 8 5.9592 1.9980 -0.0022 9 7 6.0267 4.2155 -0.0016 10 6 7.4942 4.4176 -0.0035 11 6 7.7245 5.6108 0.9488 12 1 7.9602 5.2550 1.9518 13 6 8.8519 6.5013 0.4228 14 9 8.5244 6.9610 -0.8573 15 9 9.0228 7.5930 1.2808 16 9 10.0395 5.7642 0.3638 17 6 6.3860 6.3841 0.9519 18 1 6.5311 7.3977 0.5783 19 7 5.8169 6.4142 2.3015 20 6 4.9099 7.3824 2.6408 21 1 4.6137 8.1235 1.9132 22 6 4.3711 7.4112 3.9198 23 7 3.4990 8.3415 4.2456 24 14 4.8829 6.1288 5.1779 25 1 6.0637 6.6198 5.9328 26 1 3.7608 5.8834 6.1190 27 1 5.2311 4.8641 4.4820 28 6 5.4678 5.5876 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9877 0.9299 -0.0013 35 1 3.4829 3.5617 0.8905 36 1 3.4820 3.5627 -0.8895 37 1 8.0008 3.5284 0.3719 38 1 7.8436 4.6577 -1.0077 39 1 6.0827 5.7483 2.9549 40 1 3.1228 8.3619 5.1394 41 1 5.5004 6.0123 -1.0035 42 1 4.4447 5.5808 0.3758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112072208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:18 Heat of formation + Delta-G solvation = -228.557699 kcal Electronic energy + Delta-G solvation = -30399.787557 eV Core-core repulsion = 25578.421504 eV Total energy + Delta-G solvation = -4821.366053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.12621 -48.59809 -48.58414 -41.51427 -40.56883 -39.12333 -36.00842 -35.57946 -33.85972 -33.65248 -32.69113 -29.56523 -29.49137 -26.66280 -25.89778 -24.72392 -23.54506 -21.93331 -21.45622 -20.79154 -19.89554 -19.54462 -19.22376 -18.76476 -18.30330 -17.77602 -17.27395 -17.08307 -16.70499 -16.43174 -16.10721 -15.88918 -15.49931 -15.42442 -15.14125 -15.01055 -14.94194 -14.83094 -14.72171 -14.67836 -14.48062 -14.34290 -14.05110 -13.62201 -13.37700 -13.17389 -13.15518 -13.01205 -12.72686 -12.64321 -12.53640 -12.36138 -12.07584 -12.02835 -11.83800 -11.30128 -11.10175 -11.02921 -10.31531 -10.07485 -9.36782 -8.04561 -5.40711 1.26841 1.34590 1.37148 1.42305 1.43752 1.58887 1.76054 2.27439 2.44512 2.70103 2.75170 2.91852 3.25705 3.26688 3.49367 3.63901 3.65976 3.78006 3.91910 4.13509 4.18172 4.21305 4.28883 4.31482 4.40469 4.49387 4.62720 4.69577 4.74212 4.85620 4.99503 5.03968 5.06615 5.19701 5.38225 5.74276 6.17204 6.24336 6.44340 6.79624 7.01328 7.17124 7.73381 7.89919 9.15813 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004234 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.405768 B = 6611.453854 C = 8860.045254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.505 3.495 4 O -0.585 6.585 5 N -0.714 5.714 6 C 0.105 3.895 7 C 0.541 3.459 8 O -0.563 6.563 9 N -0.609 5.609 10 C 0.122 3.878 11 C -0.161 4.161 12 H 0.129 0.871 13 C 0.472 3.528 14 F -0.176 7.176 15 F -0.186 7.186 16 F -0.179 7.179 17 C 0.176 3.824 18 H 0.085 0.915 19 N -0.738 5.738 20 C -0.229 4.229 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.975 5.975 24 Si 0.940 3.060 25 H -0.278 1.278 26 H -0.302 1.302 27 H -0.255 1.255 28 C 0.077 3.923 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.419 0.581 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.366 0.634 40 H 0.257 0.743 41 H 0.107 0.893 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 -15.532 -12.202 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.294 3.706 4 O -0.465 6.465 5 N -0.370 5.370 6 C -0.022 4.022 7 C 0.330 3.670 8 O -0.443 6.443 9 N -0.342 5.342 10 C -0.001 4.001 11 C -0.182 4.182 12 H 0.147 0.853 13 C 0.417 3.583 14 F -0.158 7.158 15 F -0.167 7.167 16 F -0.160 7.160 17 C 0.066 3.934 18 H 0.103 0.897 19 N -0.381 5.381 20 C -0.360 4.360 21 H 0.089 0.911 22 C -0.242 4.242 23 N -0.625 5.625 24 Si 0.768 3.232 25 H -0.205 1.205 26 H -0.229 1.229 27 H -0.180 1.180 28 C -0.048 4.048 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.258 0.742 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.199 0.801 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.495 -15.314 -12.228 20.645 hybrid contribution 0.472 -0.078 1.273 1.360 sum 6.966 -15.391 -10.954 20.135 Atomic orbital electron populations 1.21553 0.93330 1.02798 1.01889 1.21700 0.98183 0.90648 1.06868 1.21663 0.81122 0.93503 0.74356 1.90727 1.56265 1.48311 1.51200 1.45782 1.07891 1.07850 1.75494 1.20941 0.90059 0.86262 1.04988 1.20075 0.89574 0.82071 0.75287 1.90664 1.70315 1.30884 1.52425 1.48724 1.07679 1.05999 1.71756 1.22274 0.81316 0.96761 0.99758 1.23802 0.94008 0.96498 1.03887 0.85291 1.20058 0.83018 0.79582 0.75613 1.93184 1.92399 1.89785 1.40420 1.93225 1.95862 1.57051 1.70553 1.93197 1.49878 1.76684 1.96244 1.21255 0.88578 0.97783 0.85833 0.89720 1.42731 1.51333 1.34139 1.09909 1.18965 1.15077 1.05328 0.96630 0.91078 1.25326 0.99359 1.00123 0.99405 1.69840 1.34645 1.37348 1.20674 0.85657 0.77254 0.80403 0.79892 1.20451 1.22876 1.18015 1.23502 0.99795 0.80199 1.01288 0.93272 0.89273 0.93894 0.85920 0.86593 0.74240 0.89438 0.87522 0.87872 0.87673 0.80057 0.93360 0.87544 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.20 71.98 0.66 -1.60 16 2 C -0.13 -1.97 6.42 29.85 0.19 -1.78 16 3 C 0.50 12.34 7.83 87.66 0.69 13.03 16 4 O -0.59 -19.93 15.98 -3.02 -0.05 -19.98 16 5 N -0.71 -16.35 5.53 -466.79 -2.58 -18.93 16 6 C 0.10 2.71 5.13 85.63 0.44 3.15 16 7 C 0.54 14.23 7.98 87.66 0.70 14.93 16 8 O -0.56 -16.45 15.93 -3.04 -0.05 -16.50 16 9 N -0.61 -14.93 3.32 -807.91 -2.68 -17.61 16 10 C 0.12 2.54 6.33 86.53 0.55 3.09 16 11 C -0.16 -3.85 2.84 -9.78 -0.03 -3.88 16 12 H 0.13 3.10 7.65 -2.39 -0.02 3.09 16 13 C 0.47 11.10 2.51 71.98 0.18 11.28 16 14 F -0.18 -3.97 16.05 44.97 0.72 -3.25 16 15 F -0.19 -5.32 17.07 44.97 0.77 -4.55 16 16 F -0.18 -3.91 17.11 44.97 0.77 -3.14 16 17 C 0.18 5.31 3.01 46.01 0.14 5.45 16 18 H 0.08 2.66 7.38 -2.39 -0.02 2.64 16 19 N -0.74 -29.65 4.95 -318.12 -1.57 -31.23 16 20 C -0.23 -11.73 10.45 84.03 0.88 -10.85 16 21 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 22 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 23 N -0.98 -59.89 13.97 21.65 0.30 -59.59 16 24 Si 0.94 43.48 27.74 68.60 1.90 45.38 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 H -0.26 -10.67 6.52 99.48 0.65 -10.02 16 28 C 0.08 2.00 6.62 86.54 0.57 2.57 16 29 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.42 8.16 7.44 -92.71 -0.69 7.47 16 35 H 0.09 2.64 7.95 -2.39 -0.02 2.62 16 36 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.10 2.09 7.88 -2.39 -0.02 2.08 16 38 H 0.11 1.81 7.33 -2.38 -0.02 1.79 16 39 H 0.37 14.54 5.37 -92.71 -0.50 14.04 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.55 7.22 -2.39 -0.02 2.53 16 Total: -1.00 -70.48 363.70 2.81 -67.68 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.16 Total: 28.61 kcal Atomic # 6 Polarization: 27.67 SS G_CDS: 5.44 Total: 33.11 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -6.53 Total: -127.36 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.10 Total: -36.48 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 2.26 Total: -10.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.90 Total: 45.38 kcal Total: -70.48 2.81 -67.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112072208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.883 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds