Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47342 * 2 1 4 4 C 1.34772 * 120.00402 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99866 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.50702 * 109.46833 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00374 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00172 * 180.02562 * 7 6 4 10 10 C 1.48141 * 127.84231 * 180.02562 * 9 7 6 11 11 C 1.54387 * 104.62167 * 219.58762 * 10 9 7 12 12 H 1.09003 * 110.34032 * 95.11136 * 11 10 9 13 13 C 1.52997 * 110.34685 * 217.26341 * 11 10 9 14 14 F 1.39903 * 109.46906 * 58.54634 * 13 11 10 15 15 F 1.39894 * 109.47276 * 178.54630 * 13 11 10 16 16 F 1.39902 * 109.47106 * 298.55236 * 13 11 10 17 17 C 1.54590 * 104.99065 * 336.14662 * 11 10 9 18 18 H 1.09000 * 110.44185 * 241.14371 * 17 11 10 19 19 N 1.46503 * 110.38870 * 118.78993 * 17 11 10 20 20 C 1.36940 * 120.00013 * 158.16282 * 19 17 11 21 21 H 1.08003 * 119.99490 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00118 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00066 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46686 * 89.99999 * 24 22 20 26 26 H 1.48498 * 109.46780 * 209.99711 * 24 22 20 27 27 H 1.48494 * 109.46946 * 330.00056 * 24 22 20 28 28 C 1.48151 * 127.83369 * 0.02712 * 9 7 6 29 29 H 1.08996 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47119 * 299.99899 * 1 2 3 31 31 H 1.08998 * 109.46905 * 59.99846 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00101 * 2 1 3 33 33 H 1.09002 * 109.47476 * 119.99684 * 2 1 3 34 34 H 0.96999 * 119.99655 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47131 * 60.00869 * 6 4 3 36 36 H 1.08998 * 109.47142 * 299.99919 * 6 4 3 37 37 H 1.09001 * 110.41010 * 338.37809 * 10 9 7 38 38 H 1.09006 * 110.40650 * 100.68851 * 10 9 7 39 39 H 0.96996 * 119.99890 * 338.16684 * 19 17 11 40 40 H 0.96994 * 120.00310 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.40666 * 259.19717 * 28 9 7 42 42 H 1.09002 * 110.40751 * 21.51159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9592 1.9980 0.0001 9 7 6.0267 4.2155 0.0001 10 6 7.4942 4.4176 -0.0003 11 6 7.7236 5.6110 0.9519 12 1 7.9583 5.2555 1.9553 13 6 8.8515 6.5014 0.4268 14 9 8.5252 6.9607 -0.8538 15 9 9.0215 7.5934 1.2846 16 9 10.0392 5.7643 0.3691 17 6 6.3850 6.3844 0.9534 18 1 6.5305 7.3979 0.5797 19 7 5.8146 6.4148 2.3025 20 6 4.9072 7.3831 2.6405 21 1 4.6118 8.1241 1.9124 22 6 4.3672 7.4123 3.9189 23 7 3.4947 8.3427 4.2437 24 14 4.8777 6.1303 5.1780 25 1 6.0578 6.6215 5.9339 26 1 3.7546 5.8851 6.1180 27 1 5.2266 4.8653 4.4828 28 6 5.4678 5.5876 0.0006 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4820 3.5627 0.8895 36 1 3.4828 3.5617 -0.8905 37 1 8.0005 3.5285 0.3758 38 1 7.8446 4.6574 -1.0043 39 1 6.0798 5.7491 2.9562 40 1 3.1176 8.3633 5.1371 41 1 5.5014 6.0120 -1.0028 42 1 4.4443 5.5809 0.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112088479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = -199.864197 kcal Electronic energy + Delta-G solvation = -30489.603579 eV Core-core repulsion = 25669.481770 eV Total energy + Delta-G solvation = -4820.121809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.99738 -47.50488 -47.41603 -40.33099 -39.20449 -37.46804 -35.26012 -34.21491 -32.43396 -31.49948 -30.94369 -29.45986 -28.04168 -25.67913 -24.22535 -23.20935 -22.17884 -20.91413 -20.52964 -19.34239 -18.39493 -18.18454 -18.03675 -17.39231 -17.06856 -16.44013 -16.07414 -15.90863 -15.25909 -15.12593 -14.84187 -14.47148 -14.37388 -14.23803 -13.98348 -13.88118 -13.67638 -13.59275 -13.45357 -13.38738 -13.18055 -12.93854 -12.68762 -12.41498 -12.23073 -12.07391 -11.97817 -11.84943 -11.59899 -11.51404 -11.11252 -11.02889 -10.95211 -10.32827 -10.07044 -9.79207 -9.38238 -9.24608 -9.15530 -8.62352 -7.53528 -5.97400 -3.37175 2.57776 2.64804 2.82404 2.90805 3.24675 3.28208 3.34564 3.35483 3.87471 3.95842 4.09705 4.41141 4.47010 4.64218 4.74527 4.80173 4.84680 4.94827 5.03188 5.09297 5.11683 5.18098 5.30557 5.32631 5.43717 5.56014 5.62198 5.67441 5.73059 5.79261 5.84527 5.99919 6.08623 6.33220 6.38939 7.38151 7.63196 7.73223 8.18866 8.19928 8.37471 8.94472 9.67292 9.83509 11.19470 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.008950 B = 0.004321 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.695384 B = 6477.850751 C = 8776.999954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.738 5.738 4 C 0.514 3.486 5 O -0.497 6.497 6 C -0.162 4.162 7 C 0.540 3.460 8 O -0.505 6.505 9 N -0.619 5.619 10 C 0.120 3.880 11 C -0.170 4.170 12 H 0.125 0.875 13 C 0.465 3.535 14 F -0.181 7.181 15 F -0.173 7.173 16 F -0.186 7.186 17 C 0.184 3.816 18 H 0.086 0.914 19 N -0.735 5.735 20 C -0.258 4.258 21 H 0.096 0.904 22 C 0.018 3.982 23 N -0.924 5.924 24 Si 0.878 3.122 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.277 1.277 28 C 0.072 3.928 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.365 0.635 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -8.710 -11.060 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.393 5.393 4 C 0.298 3.702 5 O -0.369 6.369 6 C -0.204 4.204 7 C 0.327 3.673 8 O -0.378 6.378 9 N -0.355 5.355 10 C -0.004 4.004 11 C -0.191 4.191 12 H 0.143 0.857 13 C 0.410 3.590 14 F -0.163 7.163 15 F -0.154 7.154 16 F -0.168 7.168 17 C 0.072 3.928 18 H 0.104 0.896 19 N -0.377 5.377 20 C -0.387 4.387 21 H 0.113 0.887 22 C -0.180 4.180 23 N -0.570 5.570 24 Si 0.707 3.293 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.203 1.203 28 C -0.054 4.054 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.112 -9.874 -11.034 14.807 hybrid contribution 0.079 -0.101 1.054 1.061 sum 0.191 -9.975 -9.980 14.111 Atomic orbital electron populations 1.22005 0.94465 1.03124 1.02638 1.21250 0.94095 0.83085 1.02325 1.46037 1.06993 1.08901 1.77374 1.20050 0.82266 0.90856 0.77035 1.90848 1.54460 1.45536 1.46087 1.21552 0.94823 0.96827 1.07234 1.19491 0.88737 0.82120 0.76914 1.90842 1.69359 1.29666 1.47932 1.48842 1.06534 1.06207 1.73892 1.22068 0.82817 0.96915 0.98569 1.23935 0.95438 0.96573 1.03152 0.85685 1.20239 0.83031 0.80061 0.75676 1.93165 1.92465 1.89842 1.40818 1.93239 1.95811 1.56318 1.70029 1.93177 1.50351 1.76964 1.96290 1.21069 0.87081 0.96856 0.87781 0.89647 1.42792 1.51831 1.35155 1.07970 1.19002 1.16000 1.05970 0.97758 0.88667 1.24630 0.98462 0.97845 0.97041 1.69680 1.32175 1.34663 1.20453 0.86680 0.78280 0.81888 0.82426 1.20738 1.21487 1.20271 1.23552 1.01085 0.80756 0.99993 0.90911 0.91831 0.91951 0.91660 0.91624 0.76541 0.85348 0.86069 0.88824 0.90177 0.80165 0.92735 0.91030 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.03 37.16 0.37 -0.63 16 2 C 0.12 1.07 6.39 -4.04 -0.03 1.05 16 3 N -0.74 -7.41 5.56 -60.29 -0.33 -7.75 16 4 C 0.51 7.17 7.82 -10.99 -0.09 7.09 16 5 O -0.50 -9.42 14.18 -18.96 -0.27 -9.69 16 6 C -0.16 -1.98 5.16 -29.03 -0.15 -2.13 16 7 C 0.54 8.66 7.91 -10.98 -0.09 8.57 16 8 O -0.50 -10.17 14.45 -18.96 -0.27 -10.45 16 9 N -0.62 -8.94 3.32 -169.29 -0.56 -9.50 16 10 C 0.12 1.61 6.33 -2.41 -0.02 1.59 16 11 C -0.17 -2.38 2.84 -89.06 -0.25 -2.63 16 12 H 0.13 1.79 7.65 -51.93 -0.40 1.39 16 13 C 0.46 6.34 2.51 37.16 0.09 6.44 16 14 F -0.18 -2.39 16.05 2.25 0.04 -2.35 16 15 F -0.17 -2.69 17.07 2.25 0.04 -2.66 16 16 F -0.19 -2.46 17.11 2.25 0.04 -2.43 16 17 C 0.18 2.96 3.01 -66.36 -0.20 2.76 16 18 H 0.09 1.41 7.38 -51.93 -0.38 1.02 16 19 N -0.74 -15.02 4.95 -51.90 -0.26 -15.28 16 20 C -0.26 -6.39 10.45 -15.06 -0.16 -6.54 16 21 H 0.10 2.51 8.06 -52.48 -0.42 2.08 16 22 C 0.02 0.47 5.50 -17.43 -0.10 0.37 16 23 N -0.92 -26.72 13.97 55.49 0.78 -25.95 16 24 Si 0.88 20.58 27.74 -169.99 -4.71 15.86 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 28 C 0.07 0.99 6.62 -2.40 -0.02 0.97 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 35 H 0.13 1.47 7.95 -51.93 -0.41 1.05 16 36 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 39 H 0.36 7.61 5.37 -40.82 -0.22 7.39 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.39 7.21 -51.93 -0.37 1.02 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.02 362.30 -6.16 -40.17 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.47 Total: 7.64 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -0.62 Total: 16.90 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.38 Total: -58.47 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.54 Total: -20.13 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.71 Total: 15.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.02 -6.16 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112088479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.689 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds