Wall clock time and date at job start Tue Mar 31 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47342 * 2 1 4 4 C 1.34772 * 120.00402 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99866 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99993 * 179.97438 * 4 3 2 7 7 C 1.50702 * 109.46833 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00374 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00172 * 180.02562 * 7 6 4 10 10 C 1.48141 * 127.84231 * 180.02562 * 9 7 6 11 11 C 1.54387 * 104.62167 * 219.58762 * 10 9 7 12 12 H 1.09003 * 110.34032 * 95.11136 * 11 10 9 13 13 C 1.52997 * 110.34685 * 217.26341 * 11 10 9 14 14 F 1.39903 * 109.46906 * 58.54634 * 13 11 10 15 15 F 1.39894 * 109.47276 * 178.54630 * 13 11 10 16 16 F 1.39902 * 109.47106 * 298.55236 * 13 11 10 17 17 C 1.54590 * 104.99065 * 336.14662 * 11 10 9 18 18 H 1.09000 * 110.44185 * 241.14371 * 17 11 10 19 19 N 1.46503 * 110.38870 * 118.78993 * 17 11 10 20 20 C 1.36940 * 120.00013 * 158.16282 * 19 17 11 21 21 H 1.08003 * 119.99490 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00118 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00066 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46686 * 89.99999 * 24 22 20 26 26 H 1.48498 * 109.46780 * 209.99711 * 24 22 20 27 27 H 1.48494 * 109.46946 * 330.00056 * 24 22 20 28 28 C 1.48151 * 127.83369 * 0.02712 * 9 7 6 29 29 H 1.08996 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47119 * 299.99899 * 1 2 3 31 31 H 1.08998 * 109.46905 * 59.99846 * 1 2 3 32 32 H 1.09002 * 109.47119 * 240.00101 * 2 1 3 33 33 H 1.09002 * 109.47476 * 119.99684 * 2 1 3 34 34 H 0.96999 * 119.99655 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.47131 * 60.00869 * 6 4 3 36 36 H 1.08998 * 109.47142 * 299.99919 * 6 4 3 37 37 H 1.09001 * 110.41010 * 338.37809 * 10 9 7 38 38 H 1.09006 * 110.40650 * 100.68851 * 10 9 7 39 39 H 0.96996 * 119.99890 * 338.16684 * 19 17 11 40 40 H 0.96994 * 120.00310 * 180.02562 * 23 22 20 41 41 H 1.09002 * 110.40666 * 259.19717 * 28 9 7 42 42 H 1.09002 * 110.40751 * 21.51159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1316 0.7057 0.0005 6 6 3.8457 3.0484 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9592 1.9980 0.0001 9 7 6.0267 4.2155 0.0001 10 6 7.4942 4.4176 -0.0003 11 6 7.7236 5.6110 0.9519 12 1 7.9583 5.2555 1.9553 13 6 8.8515 6.5014 0.4268 14 9 8.5252 6.9607 -0.8538 15 9 9.0215 7.5934 1.2846 16 9 10.0392 5.7643 0.3691 17 6 6.3850 6.3844 0.9534 18 1 6.5305 7.3979 0.5797 19 7 5.8146 6.4148 2.3025 20 6 4.9072 7.3831 2.6405 21 1 4.6118 8.1241 1.9124 22 6 4.3672 7.4123 3.9189 23 7 3.4947 8.3427 4.2437 24 14 4.8777 6.1303 5.1780 25 1 6.0578 6.6215 5.9339 26 1 3.7546 5.8851 6.1180 27 1 5.2266 4.8653 4.4828 28 6 5.4678 5.5876 0.0006 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4820 3.5627 0.8895 36 1 3.4828 3.5617 -0.8905 37 1 8.0005 3.5285 0.3758 38 1 7.8446 4.6574 -1.0043 39 1 6.0798 5.7491 2.9562 40 1 3.1176 8.3633 5.1371 41 1 5.5014 6.0120 -1.0028 42 1 4.4443 5.5809 0.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112088479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:18 Heat of formation + Delta-G solvation = -223.635730 kcal Electronic energy + Delta-G solvation = -30490.634390 eV Core-core repulsion = 25669.481770 eV Total energy + Delta-G solvation = -4821.152620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.12047 -48.59709 -48.57455 -41.48501 -40.33733 -38.74589 -36.22283 -35.85559 -33.79477 -32.94040 -32.12227 -30.34374 -29.41375 -26.77487 -25.81217 -24.06934 -23.46592 -21.98648 -21.79208 -20.51639 -19.78594 -19.53208 -19.18936 -18.56278 -18.35109 -17.45997 -17.10950 -17.04810 -16.59927 -16.25777 -16.10120 -15.85216 -15.48681 -15.39069 -15.14843 -15.00314 -14.84284 -14.74377 -14.72185 -14.57010 -14.43737 -14.38285 -13.99189 -13.48067 -13.26042 -13.08313 -12.99556 -12.97366 -12.68468 -12.67974 -12.48813 -12.34275 -12.31935 -12.02991 -11.78914 -11.27332 -11.07752 -10.55117 -10.07990 -9.93879 -9.29395 -8.00486 -5.35544 1.38650 1.41073 1.45915 1.46940 1.58393 1.68072 1.82035 2.38310 2.47806 2.72712 2.80176 2.94411 3.30788 3.38204 3.54005 3.65857 3.69465 3.89766 3.96661 4.16989 4.19650 4.21238 4.32426 4.37453 4.47128 4.52443 4.55556 4.73080 4.79908 4.93741 4.95336 5.06354 5.19799 5.27353 5.49158 5.79453 6.21672 6.43667 6.56962 7.05319 7.10716 7.32438 7.78441 7.95426 9.19660 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.008950 B = 0.004321 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.695384 B = 6477.850751 C = 8776.999954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.720 5.720 4 C 0.508 3.492 5 O -0.555 6.555 6 C -0.155 4.155 7 C 0.533 3.467 8 O -0.552 6.552 9 N -0.617 5.617 10 C 0.120 3.880 11 C -0.161 4.161 12 H 0.123 0.877 13 C 0.472 3.528 14 F -0.175 7.175 15 F -0.185 7.185 16 F -0.182 7.182 17 C 0.175 3.825 18 H 0.085 0.915 19 N -0.740 5.740 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.044 4.044 23 N -0.973 5.973 24 Si 0.933 3.067 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.259 1.259 28 C 0.081 3.919 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.417 0.583 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.105 0.895 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -9.009 -12.393 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.375 5.375 4 C 0.294 3.706 5 O -0.432 6.432 6 C -0.196 4.196 7 C 0.322 3.678 8 O -0.429 6.429 9 N -0.351 5.351 10 C -0.003 4.003 11 C -0.182 4.182 12 H 0.141 0.859 13 C 0.417 3.583 14 F -0.157 7.157 15 F -0.166 7.166 16 F -0.163 7.163 17 C 0.065 3.935 18 H 0.103 0.897 19 N -0.382 5.382 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.237 4.237 23 N -0.623 5.623 24 Si 0.762 3.238 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.184 1.184 28 C -0.043 4.043 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.255 0.745 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.197 0.803 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.268 -10.159 -12.419 16.047 hybrid contribution 0.246 0.034 1.350 1.372 sum -0.022 -10.125 -11.069 15.002 Atomic orbital electron populations 1.21949 0.91606 1.04181 1.03443 1.21350 0.96328 0.82400 1.01148 1.45956 1.06151 1.09987 1.75410 1.20420 0.82948 0.91011 0.76240 1.90830 1.56105 1.47188 1.49099 1.21605 0.92232 0.96202 1.09608 1.20117 0.90160 0.81607 0.75918 1.90830 1.70566 1.31323 1.50162 1.48890 1.06957 1.06156 1.73110 1.22151 0.82508 0.96279 0.99382 1.23799 0.94457 0.96498 1.03491 0.85858 1.20085 0.83005 0.79570 0.75655 1.93179 1.92416 1.89769 1.40319 1.93221 1.95877 1.56973 1.70540 1.93192 1.50057 1.76787 1.96261 1.21283 0.88375 0.97736 0.86067 0.89673 1.42781 1.51368 1.34177 1.09920 1.18982 1.14614 1.05185 0.96650 0.90564 1.25202 0.99510 0.99864 0.99085 1.69818 1.34681 1.37180 1.20656 0.85762 0.77133 0.80634 0.80241 1.21257 1.22640 1.18353 1.23459 1.00093 0.79876 1.00918 0.89802 0.91350 0.90707 0.92533 0.93285 0.74518 0.84086 0.82125 0.89352 0.88163 0.80268 0.93381 0.87735 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.03 71.98 0.72 -0.81 16 2 C 0.11 1.95 6.39 86.38 0.55 2.51 16 3 N -0.72 -13.22 5.56 -463.05 -2.57 -15.79 16 4 C 0.51 13.65 7.82 87.66 0.69 14.33 16 5 O -0.56 -21.32 14.18 20.40 0.29 -21.03 16 6 C -0.15 -3.40 5.16 29.10 0.15 -3.25 16 7 C 0.53 16.19 7.91 87.66 0.69 16.89 16 8 O -0.55 -22.17 14.45 20.40 0.29 -21.88 16 9 N -0.62 -16.20 3.32 -807.91 -2.68 -18.88 16 10 C 0.12 2.93 6.33 86.53 0.55 3.48 16 11 C -0.16 -4.15 2.84 -9.78 -0.03 -4.18 16 12 H 0.12 3.28 7.65 -2.39 -0.02 3.26 16 13 C 0.47 11.81 2.51 71.98 0.18 11.99 16 14 F -0.18 -4.12 16.05 44.97 0.72 -3.40 16 15 F -0.18 -5.45 17.07 44.97 0.77 -4.68 16 16 F -0.18 -4.41 17.11 44.97 0.77 -3.64 16 17 C 0.18 5.20 3.01 46.01 0.14 5.33 16 18 H 0.09 2.59 7.38 -2.39 -0.02 2.57 16 19 N -0.74 -28.78 4.95 -318.12 -1.57 -30.36 16 20 C -0.22 -10.84 10.45 84.03 0.88 -9.96 16 21 H 0.08 3.97 8.06 -2.91 -0.02 3.94 16 22 C -0.04 -2.32 5.50 84.86 0.47 -1.86 16 23 N -0.97 -57.01 13.97 21.65 0.30 -56.71 16 24 Si 0.93 42.28 27.74 68.60 1.90 44.19 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.26 -10.76 6.52 99.48 0.65 -10.11 16 28 C 0.08 1.95 6.62 86.54 0.57 2.53 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.42 4.73 8.47 -92.71 -0.79 3.95 16 35 H 0.14 2.79 7.95 -2.39 -0.02 2.77 16 36 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.31 7.88 -2.39 -0.02 2.29 16 38 H 0.10 2.08 7.33 -2.38 -0.02 2.06 16 39 H 0.36 14.39 5.37 -92.71 -0.50 13.89 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.43 7.21 -2.39 -0.02 2.41 16 Total: -1.00 -75.44 362.30 3.52 -71.92 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.26 Total: 23.25 kcal Atomic # 6 Polarization: 31.44 SS G_CDS: 5.56 Total: 37.00 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.52 Total: -121.74 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: 0.58 Total: -42.90 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 2.26 Total: -11.72 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.90 Total: 44.19 kcal Total: -75.44 3.52 -71.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112088479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.715 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds