Wall clock time and date at job start Tue Mar 31 2020 21:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47058 * 2 1 4 4 C 1.53002 * 109.47080 * 120.00724 * 2 1 3 5 5 C 1.50701 * 109.46985 * 294.99721 * 4 2 1 6 6 N 1.34768 * 120.00232 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99521 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.46880 * 240.00329 * 2 1 3 9 9 O 1.21279 * 120.00054 * 240.00409 * 8 2 1 10 10 N 1.34779 * 119.99951 * 60.00280 * 8 2 1 11 11 C 1.48142 * 127.83722 * 179.97438 * 10 8 2 12 12 C 1.54397 * 104.61412 * 219.60489 * 11 10 8 13 13 H 1.09002 * 110.34226 * 95.00254 * 12 11 10 14 14 C 1.53001 * 110.34022 * 217.26220 * 12 11 10 15 15 F 1.39897 * 109.47041 * 175.53990 * 14 12 11 16 16 F 1.39907 * 109.46916 * 295.53260 * 14 12 11 17 17 F 1.39899 * 109.47665 * 55.53160 * 14 12 11 18 18 C 1.54287 * 104.95976 * 336.12786 * 12 11 10 19 19 H 1.08991 * 110.43298 * 241.08483 * 18 12 11 20 20 N 1.46499 * 110.34031 * 118.87340 * 18 12 11 21 21 C 1.36931 * 120.00122 * 158.00987 * 20 18 12 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 C 1.48148 * 127.83782 * 359.97237 * 10 8 2 30 30 H 1.09000 * 109.47177 * 299.99522 * 1 2 3 31 31 H 1.08999 * 109.47074 * 59.99244 * 1 2 3 32 32 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47062 * 54.99333 * 4 2 1 34 34 H 1.09003 * 109.46886 * 175.00045 * 4 2 1 35 35 H 0.97005 * 119.99701 * 0.02562 * 6 5 4 36 36 H 0.97002 * 120.00113 * 179.97438 * 6 5 4 37 37 H 1.08999 * 110.41048 * 338.38341 * 11 10 8 38 38 H 1.08994 * 110.41171 * 100.70295 * 11 10 8 39 39 H 0.97001 * 119.99790 * 338.00504 * 20 18 12 40 40 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 41 41 H 1.08999 * 110.40547 * 21.60929 * 29 10 8 42 42 H 1.09000 * 110.50546 * 259.23127 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0568 2.4766 6 7 1.9853 -0.3917 3.7000 7 8 1.0110 1.0867 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7294 -1.6965 -1.1194 10 7 1.7067 -0.2498 -2.4546 11 6 2.1010 -0.8065 -3.7696 12 6 2.3921 0.4313 -4.6453 13 1 3.4567 0.6646 -4.6297 14 6 1.9201 0.1902 -6.0806 15 9 2.0990 1.3564 -6.8324 16 9 2.6652 -0.8492 -6.6480 17 9 0.5650 -0.1572 -6.0739 18 6 1.5827 1.5752 -3.9996 19 1 0.8490 1.9669 -4.7041 20 7 2.4792 2.6440 -3.5524 21 6 1.9962 3.9127 -3.3732 22 1 0.9541 4.1253 -3.5611 23 6 2.8457 4.9256 -2.9500 24 7 4.1156 4.6663 -2.7204 25 14 2.1850 6.6545 -2.6980 26 1 3.2838 7.5426 -2.2410 27 1 1.6357 7.1661 -3.9794 28 1 1.1102 6.6294 -1.6736 29 6 0.8732 0.9281 -2.7904 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 2.4898 -1.2153 3.7905 36 1 1.7290 0.1094 4.4901 37 1 2.9963 -1.4202 -3.6695 38 1 1.2856 -1.3917 -4.1946 39 1 3.4150 2.4529 -3.3832 40 1 4.7092 5.3741 -2.4243 41 1 0.8420 1.6232 -1.9513 42 1 -0.1353 0.6171 -3.0629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112144209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:35 Heat of formation + Delta-G solvation = -214.876440 kcal Electronic energy + Delta-G solvation = -31001.792465 eV Core-core repulsion = 26181.019675 eV Total energy + Delta-G solvation = -4820.772789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.91402 -47.42655 -47.32729 -40.31381 -39.32829 -37.63762 -34.20579 -34.04223 -33.75595 -31.93243 -30.58590 -27.95690 -27.59169 -25.94877 -24.42667 -23.40204 -22.08720 -20.53846 -20.33248 -19.06283 -18.32054 -18.00842 -17.83631 -17.53441 -17.01918 -16.67550 -16.28153 -15.61504 -15.25173 -15.10168 -14.70665 -14.39310 -14.24566 -14.04525 -13.82438 -13.76695 -13.63331 -13.50838 -13.49511 -13.31813 -13.12626 -12.97400 -12.53643 -12.20672 -11.86057 -11.84474 -11.68082 -11.33589 -11.04790 -10.98725 -10.90515 -10.85247 -10.81603 -10.20891 -9.95498 -9.84958 -9.79960 -9.53284 -9.16457 -8.55234 -7.16194 -5.89986 -3.22420 2.59786 2.74612 2.86284 3.10681 3.39743 3.44670 3.44996 3.53829 3.98425 4.07874 4.20847 4.50622 4.55171 4.75580 4.89703 4.96385 5.00240 5.11999 5.25398 5.34655 5.46473 5.48317 5.56003 5.59692 5.70847 5.71412 5.93264 5.97028 6.03726 6.10194 6.17075 6.27957 6.37474 6.54998 6.67749 7.19489 7.57987 7.72427 8.19285 8.25139 8.31124 9.38256 9.86699 10.21952 11.31432 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.007869 B = 0.005129 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.451753 B = 5457.477487 C = 8251.452734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.114 0.886 4 C -0.122 4.122 5 C 0.517 3.483 6 N -0.860 5.860 7 O -0.534 6.534 8 C 0.547 3.453 9 O -0.556 6.556 10 N -0.608 5.608 11 C 0.117 3.883 12 C -0.165 4.165 13 H 0.128 0.872 14 C 0.464 3.536 15 F -0.173 7.173 16 F -0.187 7.187 17 F -0.184 7.184 18 C 0.178 3.822 19 H 0.076 0.924 20 N -0.709 5.709 21 C -0.254 4.254 22 H 0.074 0.926 23 C -0.002 4.002 24 N -0.927 5.927 25 Si 0.909 3.091 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.070 3.930 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.100 0.900 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -13.923 4.203 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 H 0.132 0.868 4 C -0.162 4.162 5 C 0.302 3.698 6 N -0.423 5.423 7 O -0.410 6.410 8 C 0.337 3.663 9 O -0.434 6.434 10 N -0.341 5.341 11 C -0.007 4.007 12 C -0.187 4.187 13 H 0.146 0.854 14 C 0.409 3.591 15 F -0.154 7.154 16 F -0.169 7.169 17 F -0.165 7.165 18 C 0.065 3.935 19 H 0.094 0.906 20 N -0.350 5.350 21 C -0.384 4.384 22 H 0.092 0.908 23 C -0.199 4.199 24 N -0.573 5.573 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.210 1.210 28 H -0.209 1.209 29 C -0.056 4.056 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.229 0.771 36 H 0.230 0.770 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.497 -13.643 4.082 15.265 hybrid contribution 0.213 0.710 0.275 0.790 sum -5.284 -12.933 4.357 14.635 Atomic orbital electron populations 1.22014 0.92446 1.01936 1.04626 1.20925 0.98295 1.01599 0.90403 0.86801 1.21438 1.03931 0.99752 0.91104 1.20705 0.78451 0.85396 0.85229 1.43882 1.60514 1.29641 1.08306 1.90759 1.39347 1.24283 1.86605 1.20186 0.79235 0.83718 0.83167 1.90656 1.39268 1.27180 1.86335 1.48729 1.51132 1.30046 1.04146 1.22106 1.01835 0.93775 0.82961 1.23866 1.05522 1.00292 0.88999 0.85357 1.20302 0.75000 0.73880 0.89886 1.93235 1.94966 1.48496 1.78707 1.93170 1.76781 1.59660 1.87288 1.93152 1.34189 1.92196 1.96991 1.21061 0.92180 0.87006 0.93254 0.90596 1.42402 1.08407 1.04595 1.79557 1.19139 0.94628 0.85176 1.39477 0.90766 1.24761 0.95527 0.98332 1.01326 1.69651 1.03511 1.32762 1.51379 0.86256 0.77695 0.84119 0.78036 1.21646 1.21049 1.20945 1.23728 0.93433 0.86847 1.01604 0.89748 0.91326 0.93088 0.88326 0.87904 0.77107 0.77002 0.88933 0.90349 0.77813 0.93184 0.88134 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.68 37.16 0.32 -1.66 16 2 C -0.09 -1.31 1.70 -91.77 -0.16 -1.46 16 3 H 0.11 1.92 7.77 -51.93 -0.40 1.51 16 4 C -0.12 -1.44 4.52 -27.88 -0.13 -1.56 16 5 C 0.52 6.25 7.82 -10.99 -0.09 6.16 16 6 N -0.86 -6.68 8.87 31.22 0.28 -6.40 16 7 O -0.53 -8.70 14.80 5.55 0.08 -8.62 16 8 C 0.55 8.78 7.27 -10.98 -0.08 8.70 16 9 O -0.56 -9.95 16.19 5.56 0.09 -9.86 16 10 N -0.61 -9.37 3.31 -169.29 -0.56 -9.93 16 11 C 0.12 1.64 6.38 -2.41 -0.02 1.63 16 12 C -0.17 -2.51 2.84 -89.21 -0.25 -2.76 16 13 H 0.13 2.04 7.64 -51.93 -0.40 1.65 16 14 C 0.46 6.74 2.53 37.16 0.09 6.83 16 15 F -0.17 -2.87 16.93 2.25 0.04 -2.83 16 16 F -0.19 -2.61 17.17 2.25 0.04 -2.57 16 17 F -0.18 -2.55 16.05 2.25 0.04 -2.51 16 18 C 0.18 3.13 2.99 -66.52 -0.20 2.93 16 19 H 0.08 1.35 7.37 -51.93 -0.38 0.97 16 20 N -0.71 -16.05 5.14 -52.06 -0.27 -16.32 16 21 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 24 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 25 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.07 1.09 4.97 -2.39 -0.01 1.08 16 30 H 0.08 1.17 5.95 -51.93 -0.31 0.87 16 31 H 0.07 0.89 5.34 -51.93 -0.28 0.61 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.20 7.96 -51.93 -0.41 0.78 16 35 H 0.40 1.91 8.83 -40.82 -0.36 1.55 16 36 H 0.40 2.74 8.93 -40.82 -0.36 2.37 16 37 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 39 H 0.39 9.53 7.50 -40.82 -0.31 9.22 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.10 1.75 6.48 -51.93 -0.34 1.41 16 42 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -32.01 356.86 -5.08 -37.09 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.14 Total: 12.89 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -0.76 Total: 13.08 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.17 Total: -58.65 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.48 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.91 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.01 -5.08 -37.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112144209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.783 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds