Wall clock time and date at job start Tue Mar 31 2020 21:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47058 * 2 1 4 4 C 1.53002 * 109.47080 * 120.00724 * 2 1 3 5 5 C 1.50701 * 109.46985 * 294.99721 * 4 2 1 6 6 N 1.34768 * 120.00232 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99521 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.46880 * 240.00329 * 2 1 3 9 9 O 1.21279 * 120.00054 * 240.00409 * 8 2 1 10 10 N 1.34779 * 119.99951 * 60.00280 * 8 2 1 11 11 C 1.48142 * 127.83722 * 179.97438 * 10 8 2 12 12 C 1.54397 * 104.61412 * 219.60489 * 11 10 8 13 13 H 1.09002 * 110.34226 * 95.00254 * 12 11 10 14 14 C 1.53001 * 110.34022 * 217.26220 * 12 11 10 15 15 F 1.39897 * 109.47041 * 175.53990 * 14 12 11 16 16 F 1.39907 * 109.46916 * 295.53260 * 14 12 11 17 17 F 1.39899 * 109.47665 * 55.53160 * 14 12 11 18 18 C 1.54287 * 104.95976 * 336.12786 * 12 11 10 19 19 H 1.08991 * 110.43298 * 241.08483 * 18 12 11 20 20 N 1.46499 * 110.34031 * 118.87340 * 18 12 11 21 21 C 1.36931 * 120.00122 * 158.00987 * 20 18 12 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 C 1.48148 * 127.83782 * 359.97237 * 10 8 2 30 30 H 1.09000 * 109.47177 * 299.99522 * 1 2 3 31 31 H 1.08999 * 109.47074 * 59.99244 * 1 2 3 32 32 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47062 * 54.99333 * 4 2 1 34 34 H 1.09003 * 109.46886 * 175.00045 * 4 2 1 35 35 H 0.97005 * 119.99701 * 0.02562 * 6 5 4 36 36 H 0.97002 * 120.00113 * 179.97438 * 6 5 4 37 37 H 1.08999 * 110.41048 * 338.38341 * 11 10 8 38 38 H 1.08994 * 110.41171 * 100.70295 * 11 10 8 39 39 H 0.97001 * 119.99790 * 338.00504 * 20 18 12 40 40 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 41 41 H 1.08999 * 110.40547 * 21.60929 * 29 10 8 42 42 H 1.09000 * 110.50546 * 259.23127 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0568 2.4766 6 7 1.9853 -0.3917 3.7000 7 8 1.0110 1.0867 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7294 -1.6965 -1.1194 10 7 1.7067 -0.2498 -2.4546 11 6 2.1010 -0.8065 -3.7696 12 6 2.3921 0.4313 -4.6453 13 1 3.4567 0.6646 -4.6297 14 6 1.9201 0.1902 -6.0806 15 9 2.0990 1.3564 -6.8324 16 9 2.6652 -0.8492 -6.6480 17 9 0.5650 -0.1572 -6.0739 18 6 1.5827 1.5752 -3.9996 19 1 0.8490 1.9669 -4.7041 20 7 2.4792 2.6440 -3.5524 21 6 1.9962 3.9127 -3.3732 22 1 0.9541 4.1253 -3.5611 23 6 2.8457 4.9256 -2.9500 24 7 4.1156 4.6663 -2.7204 25 14 2.1850 6.6545 -2.6980 26 1 3.2838 7.5426 -2.2410 27 1 1.6357 7.1661 -3.9794 28 1 1.1102 6.6294 -1.6736 29 6 0.8732 0.9281 -2.7904 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 2.4898 -1.2153 3.7905 36 1 1.7290 0.1094 4.4901 37 1 2.9963 -1.4202 -3.6695 38 1 1.2856 -1.3917 -4.1946 39 1 3.4150 2.4529 -3.3832 40 1 4.7092 5.3741 -2.4243 41 1 0.8420 1.6232 -1.9513 42 1 -0.1353 0.6171 -3.0629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112144209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:33 Heat of formation + Delta-G solvation = -238.893712 kcal Electronic energy + Delta-G solvation = -31002.833932 eV Core-core repulsion = 26181.019675 eV Total energy + Delta-G solvation = -4821.814256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.11321 -48.58447 -48.56862 -41.50770 -40.41373 -38.97793 -35.82449 -35.30047 -34.63783 -33.42892 -32.19461 -29.21313 -28.85030 -27.13562 -26.10343 -24.73053 -23.40035 -21.78405 -21.44042 -20.28988 -19.56645 -19.38901 -19.17341 -18.62294 -18.22967 -17.89928 -17.46601 -16.79554 -16.66966 -16.31583 -16.05347 -15.72459 -15.47966 -15.29567 -15.17052 -15.11303 -14.98077 -14.91688 -14.70484 -14.67609 -14.25319 -14.13004 -13.70147 -13.53069 -13.29938 -13.06255 -12.94263 -12.79517 -12.65111 -12.51507 -12.24432 -12.12788 -12.10219 -12.05764 -11.76500 -11.09729 -11.00961 -10.80234 -10.56043 -9.90386 -9.03780 -7.95389 -5.25386 1.48522 1.50343 1.52030 1.56865 1.63189 1.65587 1.92545 2.54029 2.64781 2.78868 2.83780 2.98960 3.37189 3.45441 3.61850 3.69901 3.83924 3.88123 3.96945 4.02494 4.18792 4.22935 4.40395 4.50645 4.55003 4.65372 4.67256 4.75945 4.78984 4.88155 4.98649 5.09815 5.19341 5.34074 5.54224 5.94737 6.23610 6.44444 6.47971 7.04064 7.32639 7.38495 7.99412 8.23501 9.27097 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.007869 B = 0.005129 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3557.451753 B = 5457.477487 C = 8251.452734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.516 3.484 6 N -0.836 5.836 7 O -0.582 6.582 8 C 0.545 3.455 9 O -0.574 6.574 10 N -0.610 5.610 11 C 0.120 3.880 12 C -0.157 4.157 13 H 0.118 0.882 14 C 0.473 3.527 15 F -0.186 7.186 16 F -0.181 7.181 17 F -0.175 7.175 18 C 0.171 3.829 19 H 0.080 0.920 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.084 0.916 23 C -0.065 4.065 24 N -0.965 5.965 25 Si 0.965 3.035 26 H -0.301 1.301 27 H -0.276 1.276 28 H -0.279 1.279 29 C 0.081 3.919 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.418 0.582 36 H 0.408 0.592 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.081 0.919 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 -15.588 4.266 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.157 4.157 5 C 0.302 3.698 6 N -0.401 5.401 7 O -0.463 6.463 8 C 0.336 3.664 9 O -0.454 6.454 10 N -0.342 5.342 11 C -0.003 4.003 12 C -0.178 4.178 13 H 0.136 0.864 14 C 0.418 3.582 15 F -0.167 7.167 16 F -0.162 7.162 17 F -0.157 7.157 18 C 0.061 3.939 19 H 0.098 0.902 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.102 0.898 23 C -0.258 4.258 24 N -0.615 5.615 25 Si 0.794 3.206 26 H -0.228 1.228 27 H -0.202 1.202 28 H -0.205 1.205 29 C -0.044 4.044 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.975 -15.373 4.149 17.384 hybrid contribution 0.640 1.109 0.232 1.301 sum -6.336 -14.264 4.381 16.211 Atomic orbital electron populations 1.21934 0.91270 1.02899 1.04049 1.20884 0.99289 0.99905 0.90983 0.89920 1.21413 1.04006 1.00365 0.89914 1.20751 0.77984 0.84736 0.86345 1.43675 1.59197 1.29966 1.07231 1.90745 1.41847 1.26329 1.87342 1.20436 0.78846 0.83526 0.83610 1.90642 1.40037 1.28109 1.86618 1.48779 1.50993 1.29840 1.04604 1.22218 1.02909 0.93164 0.82041 1.23697 1.04584 0.99888 0.89673 0.86357 1.20057 0.75325 0.73632 0.89142 1.93216 1.95086 1.49420 1.78986 1.93188 1.76698 1.59205 1.87110 1.93170 1.33516 1.92059 1.96919 1.21259 0.91890 0.86690 0.94095 0.90235 1.42511 1.08511 1.05078 1.79945 1.19532 0.94798 0.86193 1.36601 0.89787 1.25456 0.95883 1.01675 1.02818 1.69797 1.04654 1.33159 1.53916 0.85344 0.76731 0.80400 0.78091 1.22769 1.20240 1.20486 1.23525 0.94644 0.86608 0.99669 0.90712 0.91488 0.91226 0.86111 0.87809 0.75054 0.76099 0.88745 0.87902 0.79311 0.94132 0.90044 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.68 71.98 0.63 -2.96 16 2 C -0.09 -2.52 1.70 -11.54 -0.02 -2.54 16 3 H 0.08 2.89 7.77 -2.39 -0.02 2.87 16 4 C -0.12 -2.62 4.52 29.85 0.13 -2.49 16 5 C 0.52 12.05 7.82 87.66 0.69 12.73 16 6 N -0.84 -11.51 8.87 -173.54 -1.54 -13.05 16 7 O -0.58 -19.12 14.80 -3.05 -0.05 -19.16 16 8 C 0.55 16.89 7.27 87.66 0.64 17.53 16 9 O -0.57 -19.72 16.19 -3.03 -0.05 -19.77 16 10 N -0.61 -17.88 3.31 -807.90 -2.67 -20.55 16 11 C 0.12 3.10 6.38 86.54 0.55 3.66 16 12 C -0.16 -4.55 2.84 -9.88 -0.03 -4.57 16 13 H 0.12 3.73 7.64 -2.39 -0.02 3.71 16 14 C 0.47 12.82 2.53 71.98 0.18 13.00 16 15 F -0.19 -5.93 16.93 44.97 0.76 -5.17 16 16 F -0.18 -4.64 17.17 44.97 0.77 -3.87 16 17 F -0.18 -4.35 16.05 44.97 0.72 -3.63 16 18 C 0.17 5.83 2.99 45.91 0.14 5.97 16 19 H 0.08 2.68 7.37 -2.39 -0.02 2.67 16 20 N -0.72 -32.80 5.14 -318.62 -1.64 -34.44 16 21 C -0.24 -12.27 9.97 84.03 0.84 -11.44 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 24 N -0.97 -57.21 13.06 21.65 0.28 -56.93 16 25 Si 0.96 44.95 29.55 68.60 2.03 46.98 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 C 0.08 2.40 4.97 86.54 0.43 2.83 16 30 H 0.07 2.05 5.95 -2.39 -0.01 2.04 16 31 H 0.07 1.65 5.34 -2.39 -0.01 1.63 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.31 7.96 -2.39 -0.02 2.30 16 35 H 0.42 2.96 8.83 -92.70 -0.82 2.14 16 36 H 0.41 4.89 8.93 -92.71 -0.83 4.06 16 37 H 0.09 2.47 7.88 -2.39 -0.02 2.46 16 38 H 0.10 2.21 7.22 -2.39 -0.02 2.20 16 39 H 0.37 18.85 7.50 -92.71 -0.70 18.16 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.08 2.80 6.48 -2.39 -0.02 2.78 16 42 H 0.10 2.37 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -69.52 356.86 2.04 -67.48 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -1.22 Total: 33.52 kcal Atomic # 6 Polarization: 23.95 SS G_CDS: 4.64 Total: 28.59 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.56 Total: -124.97 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.09 Total: -38.93 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 2.26 Total: -12.67 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.52 2.04 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112144209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.417 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds