Wall clock time and date at job start Tue Mar 31 2020 21:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47182 * 2 1 4 4 C 1.53005 * 109.47004 * 240.00392 * 2 1 3 5 5 C 1.50688 * 109.47241 * 64.99579 * 4 2 1 6 6 N 1.34780 * 120.00246 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00390 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.47235 * 120.00344 * 2 1 3 9 9 O 1.21278 * 119.99850 * 93.06032 * 8 2 1 10 10 N 1.34780 * 119.99885 * 273.05281 * 8 2 1 11 11 C 1.48139 * 127.83782 * 174.62953 * 10 8 2 12 12 C 1.54391 * 104.62007 * 219.61006 * 11 10 8 13 13 H 1.09000 * 110.33853 * 95.00476 * 12 11 10 14 14 C 1.52999 * 110.34226 * 217.26127 * 12 11 10 15 15 F 1.39893 * 109.46937 * 175.53313 * 14 12 11 16 16 F 1.39895 * 109.47283 * 295.53923 * 14 12 11 17 17 F 1.39907 * 109.47085 * 55.54061 * 14 12 11 18 18 C 1.54283 * 104.95580 * 336.13646 * 12 11 10 19 19 H 1.09004 * 110.42765 * 241.07820 * 18 12 11 20 20 N 1.46501 * 110.34220 * 118.87137 * 18 12 11 21 21 C 1.36936 * 119.99924 * 158.00356 * 20 18 12 22 22 H 1.07999 * 120.00003 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99804 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00344 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00110 * 180.27469 * 23 21 20 26 26 H 1.48499 * 109.47206 * 269.72773 * 25 23 21 27 27 H 1.48504 * 109.47059 * 29.72863 * 25 23 21 28 28 H 1.48504 * 109.47463 * 149.72339 * 25 23 21 29 29 C 1.48150 * 127.83705 * 354.66348 * 10 8 2 30 30 H 1.08997 * 109.47223 * 64.34769 * 1 2 3 31 31 H 1.09001 * 109.47031 * 184.34552 * 1 2 3 32 32 H 1.08997 * 109.47090 * 304.34132 * 1 2 3 33 33 H 1.09004 * 109.46868 * 185.00264 * 4 2 1 34 34 H 1.09002 * 109.46687 * 304.99710 * 4 2 1 35 35 H 0.97000 * 119.99599 * 0.02562 * 6 5 4 36 36 H 0.96997 * 120.00359 * 179.97438 * 6 5 4 37 37 H 1.09001 * 110.40911 * 338.39713 * 11 10 8 38 38 H 1.08996 * 110.40536 * 100.70669 * 11 10 8 39 39 H 0.97004 * 119.99836 * 338.00884 * 20 18 12 40 40 H 0.96999 * 120.00575 * 179.97438 * 24 23 21 41 41 H 1.08995 * 110.40582 * 21.60500 * 29 10 8 42 42 H 1.08995 * 110.40492 * 259.17318 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4765 6 7 1.9852 -0.3913 -3.7002 7 8 1.0116 1.0874 -2.3632 8 6 2.0323 -0.7105 1.2304 9 8 2.2873 -1.8953 1.1849 10 7 2.1984 -0.0292 2.3814 11 6 2.5727 -0.5671 3.7100 12 6 1.7041 0.2257 4.7103 13 1 0.7952 -0.3284 4.9449 14 6 2.4951 0.5173 5.9870 15 9 1.7285 1.3215 6.8371 16 9 2.7993 -0.6861 6.6322 17 9 3.6809 1.1833 5.6590 18 6 1.3576 1.5408 3.9817 19 1 1.7496 2.3957 4.5327 20 7 -0.0928 1.6644 3.8161 21 6 -0.6571 2.8968 3.6218 22 1 -0.0330 3.7776 3.5902 23 6 -2.0313 3.0138 3.4644 24 7 -2.7919 1.9403 3.5024 25 14 -2.8004 4.6941 3.1916 26 1 -3.1553 5.2948 4.5025 27 1 -1.8315 5.5740 2.4899 28 1 -4.0259 4.5495 2.3654 29 6 2.0472 1.4275 2.6051 30 1 -0.3633 0.4449 -0.9263 31 1 -0.3633 -1.0247 0.0779 32 1 -0.3633 0.5797 0.8485 33 1 3.1263 -0.7994 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.4891 -1.2151 -3.7908 36 1 1.7282 0.1095 -4.4901 37 1 2.3435 -1.6312 3.7676 38 1 3.6315 -0.3962 3.9046 39 1 -0.6533 0.8732 3.8442 40 1 -3.7522 2.0221 3.3928 41 1 1.4214 1.8683 1.8291 42 1 3.0234 1.9118 2.6281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112144212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:41 Heat of formation + Delta-G solvation = -216.069892 kcal Electronic energy + Delta-G solvation = -31057.722320 eV Core-core repulsion = 26236.897779 eV Total energy + Delta-G solvation = -4820.824541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91572 -47.42824 -47.32879 -40.28245 -39.34090 -37.65175 -34.06892 -34.02683 -33.78100 -31.93858 -30.57914 -27.83822 -27.61368 -26.01273 -24.33390 -23.36160 -22.11167 -20.55470 -20.32880 -18.92160 -18.32571 -18.01767 -17.87863 -17.52298 -17.04251 -16.66069 -16.33041 -15.53350 -15.20028 -15.05236 -14.81961 -14.35794 -14.25723 -13.97131 -13.82478 -13.80607 -13.56125 -13.50351 -13.47260 -13.31446 -13.21118 -12.84752 -12.52008 -12.14645 -11.85319 -11.73689 -11.59865 -11.34832 -11.01035 -10.92968 -10.86731 -10.84653 -10.78826 -10.16927 -9.99099 -9.84914 -9.81512 -9.50151 -9.16593 -8.55047 -7.15619 -5.89493 -3.21828 2.57037 2.72996 2.85771 3.10496 3.39342 3.45373 3.46515 3.52033 3.98218 4.08482 4.20624 4.51069 4.57828 4.76593 4.89215 4.96632 5.01070 5.15385 5.25179 5.35739 5.47570 5.50135 5.56511 5.70472 5.73919 5.75018 5.93180 6.04929 6.09317 6.23849 6.29413 6.34725 6.53640 6.61377 6.80207 7.16931 7.59267 7.72488 8.17166 8.25407 8.31657 9.38894 9.86962 10.22492 11.31800 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.005178 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.423882 B = 5405.911526 C = 8258.366977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.098 0.902 4 C -0.125 4.125 5 C 0.516 3.484 6 N -0.860 5.860 7 O -0.531 6.531 8 C 0.547 3.453 9 O -0.554 6.554 10 N -0.610 5.610 11 C 0.117 3.883 12 C -0.165 4.165 13 H 0.128 0.872 14 C 0.464 3.536 15 F -0.173 7.173 16 F -0.187 7.187 17 F -0.184 7.184 18 C 0.179 3.821 19 H 0.076 0.924 20 N -0.708 5.708 21 C -0.253 4.253 22 H 0.074 0.926 23 C -0.001 4.001 24 N -0.925 5.925 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.291 1.291 29 C 0.069 3.931 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.400 0.600 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.099 0.901 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.244 -6.402 -6.330 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.117 0.883 4 C -0.165 4.165 5 C 0.302 3.698 6 N -0.424 5.424 7 O -0.407 6.407 8 C 0.336 3.664 9 O -0.433 6.433 10 N -0.342 5.342 11 C -0.007 4.007 12 C -0.187 4.187 13 H 0.146 0.854 14 C 0.409 3.591 15 F -0.154 7.154 16 F -0.169 7.169 17 F -0.165 7.165 18 C 0.066 3.934 19 H 0.094 0.906 20 N -0.349 5.349 21 C -0.383 4.383 22 H 0.092 0.908 23 C -0.198 4.198 24 N -0.572 5.572 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.217 1.217 29 C -0.057 4.057 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.229 0.771 36 H 0.230 0.770 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.882 -6.244 -6.176 15.591 hybrid contribution -0.389 0.472 -0.207 0.646 sum 12.492 -5.773 -6.383 15.170 Atomic orbital electron populations 1.21853 0.90917 1.02380 1.05264 1.20921 0.99304 1.00384 0.90114 0.88334 1.21492 1.03003 1.00597 0.91453 1.20686 0.78502 0.85450 0.85193 1.43896 1.60570 1.29636 1.08315 1.90776 1.39003 1.24348 1.86585 1.20233 0.76230 0.86541 0.83347 1.90654 1.52208 1.15703 1.84738 1.48795 1.68100 1.09705 1.07622 1.22097 0.97856 0.99033 0.81671 1.23869 1.00413 1.02761 0.91630 0.85359 1.20299 0.78177 0.74071 0.86518 1.93234 1.75111 1.73986 1.73069 1.93167 1.93690 1.46144 1.83896 1.93154 1.49546 1.81303 1.92539 1.21030 0.88184 0.92104 0.92088 0.90612 1.42404 0.98822 1.07698 1.85979 1.19169 0.90560 0.85490 1.43090 0.90774 1.24736 0.96155 0.97162 1.01774 1.69650 1.04642 1.27139 1.55732 0.86203 0.78912 0.83469 0.77646 1.21592 1.20518 1.21696 1.23678 1.00440 0.79596 1.01966 0.90069 0.93030 0.89995 0.88713 0.87730 0.77148 0.76997 0.89007 0.90376 0.77799 0.93244 0.88231 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.96 37.16 0.33 -2.10 16 2 C -0.09 -1.25 1.79 -91.77 -0.16 -1.41 16 3 H 0.10 1.46 6.81 -51.93 -0.35 1.11 16 4 C -0.13 -1.43 4.64 -27.89 -0.13 -1.56 16 5 C 0.52 6.08 7.78 -10.99 -0.09 5.99 16 6 N -0.86 -6.32 8.87 31.22 0.28 -6.04 16 7 O -0.53 -8.60 14.82 5.56 0.08 -8.51 16 8 C 0.55 8.79 7.00 -10.98 -0.08 8.71 16 9 O -0.55 -9.96 16.53 5.56 0.09 -9.87 16 10 N -0.61 -9.41 3.32 -169.32 -0.56 -9.97 16 11 C 0.12 1.65 6.36 -2.41 -0.02 1.63 16 12 C -0.17 -2.49 2.84 -89.22 -0.25 -2.75 16 13 H 0.13 2.03 7.64 -51.93 -0.40 1.63 16 14 C 0.46 6.72 2.53 37.16 0.09 6.82 16 15 F -0.17 -2.86 16.93 2.25 0.04 -2.82 16 16 F -0.19 -2.61 17.17 2.25 0.04 -2.57 16 17 F -0.18 -2.55 16.05 2.25 0.04 -2.51 16 18 C 0.18 3.12 2.99 -66.53 -0.20 2.92 16 19 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 20 N -0.71 -15.77 5.14 -52.07 -0.27 -16.04 16 21 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 24 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 25 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.07 1.08 6.47 -2.41 -0.02 1.06 16 30 H 0.08 1.38 5.89 -51.93 -0.31 1.08 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.14 8.03 -51.93 -0.42 0.73 16 35 H 0.40 1.72 8.83 -40.82 -0.36 1.36 16 36 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 37 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 38 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 39 H 0.39 9.37 7.50 -40.82 -0.31 9.06 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.10 1.73 6.83 -51.93 -0.35 1.37 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -31.52 361.26 -5.14 -36.67 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.26 Total: 12.66 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -0.76 Total: 12.66 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.17 Total: -57.63 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.11 Total: -7.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.52 -5.14 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112144212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.402 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds