Wall clock time and date at job start Tue Mar 31 2020 21:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47182 * 2 1 4 4 C 1.53005 * 109.47004 * 240.00392 * 2 1 3 5 5 C 1.50688 * 109.47241 * 64.99579 * 4 2 1 6 6 N 1.34780 * 120.00246 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00390 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.47235 * 120.00344 * 2 1 3 9 9 O 1.21278 * 119.99850 * 93.06032 * 8 2 1 10 10 N 1.34780 * 119.99885 * 273.05281 * 8 2 1 11 11 C 1.48139 * 127.83782 * 174.62953 * 10 8 2 12 12 C 1.54391 * 104.62007 * 219.61006 * 11 10 8 13 13 H 1.09000 * 110.33853 * 95.00476 * 12 11 10 14 14 C 1.52999 * 110.34226 * 217.26127 * 12 11 10 15 15 F 1.39893 * 109.46937 * 175.53313 * 14 12 11 16 16 F 1.39895 * 109.47283 * 295.53923 * 14 12 11 17 17 F 1.39907 * 109.47085 * 55.54061 * 14 12 11 18 18 C 1.54283 * 104.95580 * 336.13646 * 12 11 10 19 19 H 1.09004 * 110.42765 * 241.07820 * 18 12 11 20 20 N 1.46501 * 110.34220 * 118.87137 * 18 12 11 21 21 C 1.36936 * 119.99924 * 158.00356 * 20 18 12 22 22 H 1.07999 * 120.00003 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99804 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00344 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00110 * 180.27469 * 23 21 20 26 26 H 1.48499 * 109.47206 * 269.72773 * 25 23 21 27 27 H 1.48504 * 109.47059 * 29.72863 * 25 23 21 28 28 H 1.48504 * 109.47463 * 149.72339 * 25 23 21 29 29 C 1.48150 * 127.83705 * 354.66348 * 10 8 2 30 30 H 1.08997 * 109.47223 * 64.34769 * 1 2 3 31 31 H 1.09001 * 109.47031 * 184.34552 * 1 2 3 32 32 H 1.08997 * 109.47090 * 304.34132 * 1 2 3 33 33 H 1.09004 * 109.46868 * 185.00264 * 4 2 1 34 34 H 1.09002 * 109.46687 * 304.99710 * 4 2 1 35 35 H 0.97000 * 119.99599 * 0.02562 * 6 5 4 36 36 H 0.96997 * 120.00359 * 179.97438 * 6 5 4 37 37 H 1.09001 * 110.40911 * 338.39713 * 11 10 8 38 38 H 1.08996 * 110.40536 * 100.70669 * 11 10 8 39 39 H 0.97004 * 119.99836 * 338.00884 * 20 18 12 40 40 H 0.96999 * 120.00575 * 179.97438 * 24 23 21 41 41 H 1.08995 * 110.40582 * 21.60500 * 29 10 8 42 42 H 1.08995 * 110.40492 * 259.17318 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4765 6 7 1.9852 -0.3913 -3.7002 7 8 1.0116 1.0874 -2.3632 8 6 2.0323 -0.7105 1.2304 9 8 2.2873 -1.8953 1.1849 10 7 2.1984 -0.0292 2.3814 11 6 2.5727 -0.5671 3.7100 12 6 1.7041 0.2257 4.7103 13 1 0.7952 -0.3284 4.9449 14 6 2.4951 0.5173 5.9870 15 9 1.7285 1.3215 6.8371 16 9 2.7993 -0.6861 6.6322 17 9 3.6809 1.1833 5.6590 18 6 1.3576 1.5408 3.9817 19 1 1.7496 2.3957 4.5327 20 7 -0.0928 1.6644 3.8161 21 6 -0.6571 2.8968 3.6218 22 1 -0.0330 3.7776 3.5902 23 6 -2.0313 3.0138 3.4644 24 7 -2.7919 1.9403 3.5024 25 14 -2.8004 4.6941 3.1916 26 1 -3.1553 5.2948 4.5025 27 1 -1.8315 5.5740 2.4899 28 1 -4.0259 4.5495 2.3654 29 6 2.0472 1.4275 2.6051 30 1 -0.3633 0.4449 -0.9263 31 1 -0.3633 -1.0247 0.0779 32 1 -0.3633 0.5797 0.8485 33 1 3.1263 -0.7994 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.4891 -1.2151 -3.7908 36 1 1.7282 0.1095 -4.4901 37 1 2.3435 -1.6312 3.7676 38 1 3.6315 -0.3962 3.9046 39 1 -0.6533 0.8732 3.8442 40 1 -3.7522 2.0221 3.3928 41 1 1.4214 1.8683 1.8291 42 1 3.0234 1.9118 2.6281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112144212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:40 Heat of formation + Delta-G solvation = -239.529429 kcal Electronic energy + Delta-G solvation = -31058.739602 eV Core-core repulsion = 26236.897779 eV Total energy + Delta-G solvation = -4821.841823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11227 -48.58485 -48.56624 -41.48056 -40.41283 -38.99076 -35.80366 -35.21801 -34.62613 -33.43802 -32.18623 -29.13183 -28.92142 -27.25311 -26.04957 -24.68517 -23.45670 -21.76980 -21.42862 -20.16278 -19.58060 -19.40116 -19.14192 -18.67863 -18.22533 -17.87078 -17.46583 -16.80339 -16.52782 -16.24688 -16.20835 -15.66839 -15.47241 -15.38857 -15.16315 -15.06567 -14.99846 -14.77152 -14.72537 -14.64347 -14.44027 -14.06210 -13.75238 -13.50046 -13.26878 -13.06010 -12.95309 -12.86453 -12.64001 -12.55043 -12.23180 -12.19587 -12.07468 -12.00399 -11.75068 -11.12246 -11.01287 -10.77910 -10.55299 -9.90253 -9.01654 -7.93200 -5.22808 1.45122 1.50299 1.51650 1.58508 1.63430 1.66797 1.92432 2.54985 2.65392 2.79128 2.84765 2.99080 3.39165 3.46670 3.62703 3.69832 3.83340 3.89577 3.95148 4.01992 4.19740 4.23556 4.39012 4.51346 4.55289 4.65981 4.68330 4.72802 4.78213 4.90273 4.96371 5.06084 5.20143 5.34803 5.56523 5.96039 6.25537 6.44219 6.49427 7.03751 7.35089 7.40143 8.01384 8.25863 9.29145 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.005178 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.423882 B = 5405.911526 C = 8258.366977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.095 0.905 4 C -0.118 4.118 5 C 0.517 3.483 6 N -0.836 5.836 7 O -0.583 6.583 8 C 0.546 3.454 9 O -0.571 6.571 10 N -0.612 5.612 11 C 0.120 3.880 12 C -0.157 4.157 13 H 0.119 0.881 14 C 0.473 3.527 15 F -0.185 7.185 16 F -0.181 7.181 17 F -0.176 7.176 18 C 0.173 3.827 19 H 0.079 0.921 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.083 0.917 23 C -0.062 4.062 24 N -0.962 5.962 25 Si 0.961 3.039 26 H -0.289 1.289 27 H -0.268 1.268 28 H -0.302 1.302 29 C 0.079 3.921 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.418 0.582 36 H 0.408 0.592 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.080 0.920 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.706 -6.695 -6.993 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.114 0.886 4 C -0.158 4.158 5 C 0.302 3.698 6 N -0.400 5.400 7 O -0.463 6.463 8 C 0.337 3.663 9 O -0.451 6.451 10 N -0.344 5.344 11 C -0.003 4.003 12 C -0.178 4.178 13 H 0.137 0.863 14 C 0.418 3.582 15 F -0.167 7.167 16 F -0.162 7.162 17 F -0.157 7.157 18 C 0.062 3.938 19 H 0.097 0.903 20 N -0.358 5.358 21 C -0.369 4.369 22 H 0.101 0.899 23 C -0.255 4.255 24 N -0.612 5.612 25 Si 0.791 3.209 26 H -0.217 1.217 27 H -0.193 1.193 28 H -0.229 1.229 29 C -0.046 4.046 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.436 -6.556 -6.861 18.119 hybrid contribution -1.040 0.508 0.004 1.157 sum 14.396 -6.048 -6.856 17.054 Atomic orbital electron populations 1.21663 0.92736 1.01501 1.03209 1.20866 0.97551 1.00680 0.91233 0.88648 1.21454 1.04390 1.00257 0.89747 1.20729 0.77960 0.84745 0.86341 1.43676 1.59206 1.29955 1.07191 1.90765 1.41584 1.26597 1.87343 1.20415 0.75866 0.86311 0.83755 1.90643 1.53070 1.16319 1.85100 1.48842 1.67803 1.09647 1.08080 1.22207 0.98800 0.98863 0.80439 1.23699 1.00576 1.01406 0.92139 0.86311 1.20058 0.78138 0.74083 0.85880 1.93215 1.75600 1.74424 1.73451 1.93184 1.93596 1.45710 1.83716 1.93172 1.48937 1.81167 1.92427 1.21213 0.85615 0.93534 0.93428 0.90279 1.42491 1.00873 1.06283 1.86185 1.19526 0.90593 0.86770 1.39990 0.89947 1.25384 0.97020 0.99683 1.03394 1.69788 1.04181 1.28773 1.58463 0.85330 0.77820 0.80578 0.77177 1.21673 1.19297 1.22931 1.23483 1.01449 0.79970 0.99708 0.90645 0.92961 0.93639 0.86312 0.86890 0.75017 0.76100 0.88780 0.87970 0.79241 0.94186 0.90135 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.96 71.98 0.64 -3.89 16 2 C -0.08 -2.33 1.79 -11.54 -0.02 -2.35 16 3 H 0.10 2.78 6.81 -2.39 -0.02 2.77 16 4 C -0.12 -2.48 4.64 29.85 0.14 -2.34 16 5 C 0.52 11.39 7.78 87.65 0.68 12.07 16 6 N -0.84 -10.28 8.87 -173.54 -1.54 -11.82 16 7 O -0.58 -18.73 14.82 -3.03 -0.04 -18.77 16 8 C 0.55 16.84 7.00 87.66 0.61 17.45 16 9 O -0.57 -19.50 16.53 -3.02 -0.05 -19.55 16 10 N -0.61 -17.92 3.32 -807.98 -2.68 -20.60 16 11 C 0.12 3.11 6.36 86.54 0.55 3.66 16 12 C -0.16 -4.52 2.84 -9.89 -0.03 -4.54 16 13 H 0.12 3.72 7.64 -2.39 -0.02 3.70 16 14 C 0.47 12.78 2.53 71.98 0.18 12.97 16 15 F -0.19 -5.90 16.93 44.97 0.76 -5.14 16 16 F -0.18 -4.64 17.17 44.97 0.77 -3.87 16 17 F -0.18 -4.37 16.05 44.97 0.72 -3.65 16 18 C 0.17 5.85 2.99 45.89 0.14 5.99 16 19 H 0.08 2.66 7.37 -2.39 -0.02 2.64 16 20 N -0.72 -32.28 5.14 -318.66 -1.64 -33.92 16 21 C -0.24 -12.03 9.97 84.03 0.84 -11.20 16 22 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 24 N -0.96 -56.42 13.06 21.65 0.28 -56.14 16 25 Si 0.96 44.84 29.55 68.60 2.03 46.87 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 29 C 0.08 2.36 6.47 86.53 0.56 2.92 16 30 H 0.07 2.66 5.89 -2.39 -0.01 2.64 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.11 2.22 8.03 -2.39 -0.02 2.20 16 35 H 0.42 2.28 8.83 -92.71 -0.82 1.46 16 36 H 0.41 4.37 8.93 -92.71 -0.83 3.54 16 37 H 0.09 2.46 7.93 -2.39 -0.02 2.44 16 38 H 0.10 2.21 7.22 -2.39 -0.02 2.19 16 39 H 0.37 18.63 7.50 -92.71 -0.70 17.94 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.08 2.77 6.83 -2.39 -0.02 2.75 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -68.86 361.26 2.15 -66.71 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -1.23 Total: 32.04 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 4.76 Total: 27.83 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -5.57 Total: -122.47 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.09 Total: -38.33 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 2.26 Total: -12.65 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.86 2.15 -66.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112144212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.816 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds