Wall clock time and date at job start Tue Mar 31 2020 21:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47077 * 2 1 4 4 N 1.46491 * 109.47348 * 120.00616 * 2 1 3 5 5 C 1.34782 * 119.99882 * 274.99745 * 4 2 1 6 6 O 1.21280 * 119.99873 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99883 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46987 * 180.02562 * 7 5 4 9 9 F 1.39900 * 109.47216 * 59.99929 * 8 7 5 10 10 F 1.39895 * 109.47231 * 180.02562 * 8 7 5 11 11 F 1.39903 * 109.47076 * 300.00101 * 8 7 5 12 12 C 1.50706 * 109.46869 * 240.00360 * 2 1 3 13 13 O 1.21275 * 119.99864 * 248.27139 * 12 2 1 14 14 N 1.34777 * 119.99683 * 68.27217 * 12 2 1 15 15 C 1.46965 * 120.59278 * 183.15201 * 14 12 2 16 16 C 1.53365 * 108.63955 * 235.20814 * 15 14 12 17 17 N 1.46963 * 108.63149 * 310.57603 * 16 15 14 18 18 C 1.36941 * 120.59444 * 235.20184 * 17 16 15 19 19 H 1.07998 * 120.00195 * 148.73143 * 18 17 16 20 20 C 1.38813 * 119.99803 * 328.46430 * 18 17 16 21 21 N 1.31622 * 119.99969 * 349.12895 * 20 18 17 22 22 Si 1.86805 * 119.99859 * 169.13276 * 20 18 17 23 23 H 1.48497 * 109.46996 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46936 * 119.99851 * 22 20 18 25 25 H 1.48502 * 109.46947 * 239.99443 * 22 20 18 26 26 C 1.46962 * 118.81444 * 55.47719 * 17 16 15 27 27 C 1.46965 * 120.59653 * 3.13684 * 14 12 2 28 28 H 1.09005 * 109.47129 * 304.85754 * 1 2 3 29 29 H 1.08996 * 109.47541 * 64.85340 * 1 2 3 30 30 H 1.09001 * 109.47488 * 184.85898 * 1 2 3 31 31 H 0.97000 * 120.00208 * 94.99921 * 4 2 1 32 32 H 1.09000 * 109.47483 * 299.99769 * 7 5 4 33 33 H 1.08995 * 109.47362 * 60.00372 * 7 5 4 34 34 H 1.09002 * 109.61012 * 115.46107 * 15 14 12 35 35 H 1.09005 * 109.60938 * 354.95482 * 15 14 12 36 36 H 1.09001 * 109.61299 * 190.83230 * 16 15 14 37 37 H 1.08997 * 109.61483 * 70.31847 * 16 15 14 38 38 H 0.97001 * 119.99892 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.60973 * 64.26755 * 26 17 16 40 40 H 1.09001 * 109.61335 * 184.77488 * 26 17 16 41 41 H 1.09006 * 109.60428 * 244.53535 * 27 14 12 42 42 H 1.09001 * 109.60907 * 5.04628 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6489 -0.7291 3.5876 8 6 2.7000 0.2539 4.7590 9 9 1.4174 0.7573 5.0017 10 9 3.1664 -0.4056 5.9012 11 9 3.5634 1.3090 4.4451 12 6 2.0322 -0.7104 -1.2306 13 8 2.6009 -1.7764 -1.1257 14 7 1.8494 -0.1609 -2.4476 15 6 2.2721 -0.8738 -3.6613 16 6 3.2154 0.0343 -4.4597 17 7 2.5895 1.3568 -4.5970 18 6 2.4038 1.9151 -5.8335 19 1 1.5623 2.5686 -6.0102 20 6 3.3003 1.6455 -6.8585 21 7 4.4362 1.0348 -6.5955 22 14 2.8946 2.1495 -8.6109 23 1 1.5672 2.8145 -8.6399 24 1 3.9309 3.0898 -9.1080 25 1 2.8630 0.9442 -9.4778 26 6 2.1720 2.0722 -3.3830 27 6 1.2236 1.1617 -2.5848 28 1 -0.3634 0.5874 0.8433 29 1 -0.3634 0.4367 -0.9302 30 1 -0.3634 -1.0240 0.0870 31 1 2.2490 -1.6318 1.1524 32 1 1.9760 -1.5508 3.8324 33 1 3.6480 -1.1216 3.3984 34 1 1.3983 -1.1160 -4.2663 35 1 2.7936 -1.7901 -3.3844 36 1 3.3863 -0.3938 -5.4475 37 1 4.1638 0.1315 -3.9314 38 1 5.0629 0.8468 -7.3117 39 1 3.0478 2.3112 -2.7798 40 1 1.6536 2.9904 -3.6595 41 1 0.2751 1.0645 -3.1133 42 1 1.0527 1.5898 -1.5971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112880063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:36 Heat of formation + Delta-G solvation = -192.978978 kcal Electronic energy + Delta-G solvation = -30100.194868 eV Core-core repulsion = 25280.371624 eV Total energy + Delta-G solvation = -4819.823244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.32187 -47.86741 -47.72906 -40.64157 -39.41549 -37.01033 -35.24740 -34.10934 -32.68338 -31.30710 -30.95573 -29.72658 -27.10934 -25.22960 -24.22954 -23.35731 -22.75895 -21.08419 -20.43129 -19.32219 -18.85416 -18.79181 -17.91138 -17.48061 -16.71696 -16.43258 -15.92404 -15.77176 -15.28810 -14.87460 -14.81753 -14.64698 -14.52811 -14.18016 -14.00873 -13.91575 -13.88564 -13.76124 -13.63798 -13.47876 -13.40357 -13.24133 -12.78320 -12.44234 -12.31177 -12.22777 -11.81755 -11.71885 -11.24034 -10.92574 -10.80797 -10.61470 -10.44115 -10.30149 -10.09131 -9.94086 -9.67039 -9.36981 -8.66693 -8.40946 -6.74227 -5.90246 -3.41428 2.11145 2.17288 2.66299 2.71345 3.29188 3.30130 3.37884 3.39195 3.39599 3.72629 3.82243 4.33898 4.38692 4.47470 4.62640 4.69028 4.89477 4.95763 5.14748 5.28493 5.39110 5.54156 5.62712 5.66691 5.77857 5.93005 5.95931 6.07795 6.21218 6.28360 6.41121 6.61372 6.74066 7.06356 7.17211 7.49552 7.64452 7.68044 7.77606 8.26700 8.32734 9.06951 9.67419 10.25087 11.16815 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002322 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.034342 B =12056.575224 C =12174.671253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.116 0.884 4 N -0.703 5.703 5 C 0.521 3.479 6 O -0.521 6.521 7 C -0.196 4.196 8 C 0.473 3.527 9 F -0.173 7.173 10 F -0.183 7.183 11 F -0.172 7.172 12 C 0.507 3.493 13 O -0.555 6.555 14 N -0.586 5.586 15 C 0.086 3.914 16 C 0.159 3.841 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.903 5.903 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.129 3.871 27 C 0.082 3.918 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.023 0.977 38 H 0.256 0.744 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -5.545 19.494 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.133 0.867 4 N -0.357 5.357 5 C 0.305 3.695 6 O -0.396 6.396 7 C -0.236 4.236 8 C 0.418 3.582 9 F -0.155 7.155 10 F -0.165 7.165 11 F -0.153 7.153 12 C 0.293 3.707 13 O -0.434 6.434 14 N -0.317 5.317 15 C -0.037 4.037 16 C 0.032 3.968 17 N -0.314 5.314 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.547 5.547 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 C 0.002 3.998 27 C -0.043 4.043 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.250 0.750 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.312 -5.248 19.429 21.092 hybrid contribution 0.093 -0.081 -0.810 0.820 sum -6.218 -5.329 18.619 20.340 Atomic orbital electron populations 1.22200 0.92498 1.03289 1.04025 1.20820 0.95906 0.98196 0.83378 0.86677 1.45600 1.66855 1.14984 1.08263 1.19721 0.78450 0.87250 0.84101 1.90839 1.49099 1.15061 1.84601 1.22951 1.08837 0.99735 0.92123 1.19680 0.74338 0.81042 0.83103 1.93226 1.38821 1.88493 1.94924 1.93202 1.88857 1.80751 1.53654 1.93242 1.70110 1.59304 1.92655 1.20349 0.79810 0.85796 0.84736 1.90636 1.43804 1.22956 1.86034 1.48007 1.58714 1.19237 1.05781 1.22605 0.99978 0.96674 0.84455 1.21215 0.91344 0.84550 0.99647 1.43990 1.71197 1.15205 1.01004 1.19229 1.05795 1.27064 0.86665 0.91454 1.25220 0.94690 1.00138 0.99310 1.69962 1.08185 1.45015 1.31499 0.86155 0.77801 0.77950 0.84431 1.20157 1.21561 1.21469 1.21391 0.95327 0.93866 0.89224 1.22674 0.97632 0.83234 1.00762 0.90776 0.90171 0.91720 0.74989 0.84199 0.84071 0.91887 0.90049 0.87930 0.95860 0.93405 0.95728 0.91208 0.91026 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.09 37.16 0.34 -1.30 16 2 C 0.12 1.53 2.13 -69.09 -0.15 1.38 16 3 H 0.12 1.51 6.56 -51.93 -0.34 1.17 16 4 N -0.70 -7.34 5.00 -54.94 -0.27 -7.61 16 5 C 0.52 5.48 7.56 -10.98 -0.08 5.40 16 6 O -0.52 -7.42 14.50 5.56 0.08 -7.34 16 7 C -0.20 -1.29 5.75 -27.88 -0.16 -1.45 16 8 C 0.47 4.42 2.89 37.16 0.11 4.53 16 9 F -0.17 -1.92 16.40 2.25 0.04 -1.89 16 10 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 11 F -0.17 -2.03 16.40 2.25 0.04 -1.99 16 12 C 0.51 7.82 7.06 -10.98 -0.08 7.74 16 13 O -0.55 -9.77 15.23 5.56 0.08 -9.69 16 14 N -0.59 -9.69 2.95 -172.21 -0.51 -10.20 16 15 C 0.09 1.61 6.60 -3.60 -0.02 1.59 16 16 C 0.16 3.63 5.46 -3.60 -0.02 3.61 16 17 N -0.59 -13.89 2.95 -171.78 -0.51 -14.39 16 18 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 19 H 0.07 1.70 7.85 -52.49 -0.41 1.28 16 20 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 21 N -0.90 -25.21 11.04 55.49 0.61 -24.59 16 22 Si 0.91 20.78 29.57 -169.99 -5.03 15.76 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.13 2.46 6.70 -3.37 -0.02 2.44 16 27 C 0.08 1.23 5.20 -3.37 -0.02 1.21 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.79 6.03 -51.93 -0.31 0.47 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.41 3.77 7.73 -40.82 -0.32 3.45 16 32 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 36 H 0.10 2.61 6.03 -51.93 -0.31 2.29 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.93 4.94 -51.93 -0.26 0.68 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -32.19 353.23 -5.68 -37.87 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.24 Total: 1.89 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: -0.34 Total: 18.39 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.68 Total: -56.80 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.17 Total: -17.03 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.19 -5.68 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112880063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.108 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds