Wall clock time and date at job start Tue Mar 31 2020 21:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47361 * 2 1 4 4 N 1.46502 * 109.47328 * 240.00268 * 2 1 3 5 5 C 1.34772 * 120.00218 * 84.99612 * 4 2 1 6 6 O 1.21284 * 119.99766 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00164 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46969 * 180.02562 * 7 5 4 9 9 F 1.39899 * 109.47239 * 60.00502 * 8 7 5 10 10 F 1.39901 * 109.46735 * 180.02562 * 8 7 5 11 11 F 1.39893 * 109.47457 * 299.99926 * 8 7 5 12 12 C 1.50703 * 109.47314 * 120.00414 * 2 1 3 13 13 O 1.21273 * 120.00241 * 105.84869 * 12 2 1 14 14 N 1.34782 * 119.99908 * 285.84962 * 12 2 1 15 15 C 1.46962 * 120.59738 * 184.97801 * 14 12 2 16 16 C 1.53808 * 108.39996 * 124.75768 * 15 14 12 17 17 N 1.46970 * 108.57908 * 49.63817 * 16 15 14 18 18 C 1.36936 * 120.59428 * 124.62007 * 17 16 15 19 19 H 1.07988 * 120.00248 * 206.51972 * 18 17 16 20 20 C 1.38821 * 119.99546 * 26.52942 * 18 17 16 21 21 N 1.31617 * 119.99542 * 216.68323 * 20 18 17 22 22 Si 1.86796 * 120.00129 * 36.68394 * 20 18 17 23 23 H 1.48493 * 109.47172 * 95.85280 * 22 20 18 24 24 H 1.48504 * 109.46785 * 215.84885 * 22 20 18 25 25 H 1.48493 * 109.47291 * 335.84347 * 22 20 18 26 26 C 1.46959 * 118.81273 * 304.64975 * 17 16 15 27 27 C 1.46970 * 120.59187 * 5.25710 * 14 12 2 28 28 H 1.09000 * 109.47652 * 64.88777 * 1 2 3 29 29 H 1.09000 * 109.47382 * 184.89417 * 1 2 3 30 30 H 1.09008 * 109.47264 * 304.89076 * 1 2 3 31 31 H 0.97003 * 119.99946 * 265.00198 * 4 2 1 32 32 H 1.08993 * 109.47163 * 300.00333 * 7 5 4 33 33 H 1.09003 * 109.47275 * 60.00588 * 7 5 4 34 34 H 1.08993 * 109.61089 * 244.54611 * 15 14 12 35 35 H 1.09001 * 109.60490 * 5.04977 * 15 14 12 36 36 H 1.09006 * 109.74434 * 289.85030 * 16 15 14 37 37 H 1.08998 * 109.53238 * 169.30637 * 16 15 14 38 38 H 0.96995 * 119.99902 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.60886 * 295.48153 * 26 17 16 40 40 H 1.09002 * 109.75527 * 175.05076 * 26 17 16 41 41 H 1.09006 * 109.61052 * 354.95062 * 27 14 12 42 42 H 1.09006 * 109.60783 * 115.45669 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5877 8 6 2.7009 0.2547 -4.7587 9 9 3.5649 1.3091 -4.4442 10 9 3.1663 -0.4051 -5.9013 11 9 1.4189 0.7589 -5.0017 12 6 2.0323 -0.7105 1.2304 13 8 2.5049 -1.8235 1.1375 14 7 1.9564 -0.1090 2.4342 15 6 2.5399 -0.7423 3.6250 16 6 3.5228 0.2495 4.2700 17 7 2.8497 1.5477 4.4163 18 6 2.7716 2.1584 5.6394 19 1 1.9626 2.8416 5.8512 20 6 3.7327 1.8994 6.6070 21 7 3.3873 1.8284 7.8751 22 14 5.5161 1.6518 6.1094 23 1 6.2526 2.9331 6.2532 24 1 6.1357 0.6238 6.9838 25 1 5.5775 1.2013 4.6958 26 6 2.2612 2.1784 3.2265 27 6 1.2832 1.1893 2.5804 28 1 -0.3634 0.4361 -0.9305 29 1 -0.3634 -1.0239 0.0877 30 1 -0.3634 0.5879 0.8430 31 1 2.2490 -1.6317 -1.1527 32 1 3.6479 -1.1212 -3.3986 33 1 1.9759 -1.5505 -3.8327 34 1 1.7486 -0.9898 4.3326 35 1 3.0706 -1.6489 3.3342 36 1 4.4016 0.3625 3.6351 37 1 3.8222 -0.1200 5.2508 38 1 4.0589 1.6478 8.5512 39 1 3.0501 2.4288 2.5172 40 1 1.7280 3.0842 3.5153 41 1 0.9838 1.5587 1.5995 42 1 0.4044 1.0762 3.2154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112880064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:42 Heat of formation + Delta-G solvation = -183.507096 kcal Electronic energy + Delta-G solvation = -30232.964779 eV Core-core repulsion = 25413.552267 eV Total energy + Delta-G solvation = -4819.412512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.36453 -47.90849 -47.77359 -40.75276 -39.54131 -37.26781 -35.33639 -34.20963 -32.75231 -31.63782 -31.15502 -30.07009 -27.39109 -25.28747 -24.20807 -23.67491 -22.82342 -21.20063 -20.62995 -19.45828 -18.94924 -18.83661 -17.96642 -17.55398 -16.83822 -16.51384 -16.08264 -15.89191 -15.45437 -14.98365 -14.80845 -14.70793 -14.56430 -14.36670 -14.22072 -14.12039 -13.95964 -13.93063 -13.80618 -13.70858 -13.47226 -13.00205 -12.72512 -12.64690 -12.38190 -12.33388 -12.22224 -11.98661 -11.80565 -11.10688 -10.91645 -10.55028 -10.50138 -10.39459 -10.29276 -9.82850 -9.55526 -9.46391 -8.86463 -8.35204 -7.11505 -6.16194 -3.36617 2.04021 2.10664 2.52803 2.64380 3.15059 3.32508 3.34620 3.44710 3.49926 3.67873 3.76681 4.25654 4.36834 4.46452 4.57574 4.63574 4.73258 4.82124 4.89024 5.10747 5.30882 5.40837 5.45187 5.50951 5.65778 5.74648 5.87055 5.92175 5.95677 6.05464 6.12316 6.38341 6.46453 6.67414 6.75215 6.99324 7.49654 7.68617 7.79891 8.10996 8.17113 8.80089 9.59358 9.98085 10.97965 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.002599 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.631547 B =10772.789136 C =11081.778328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.116 0.884 4 N -0.704 5.704 5 C 0.521 3.479 6 O -0.519 6.519 7 C -0.196 4.196 8 C 0.473 3.527 9 F -0.172 7.172 10 F -0.183 7.183 11 F -0.173 7.173 12 C 0.509 3.491 13 O -0.553 6.553 14 N -0.589 5.589 15 C 0.092 3.908 16 C 0.132 3.868 17 N -0.599 5.599 18 C -0.279 4.279 19 H 0.084 0.916 20 C 0.041 3.959 21 N -0.877 5.877 22 Si 0.835 3.165 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.257 1.257 26 C 0.130 3.870 27 C 0.081 3.919 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.264 0.736 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -7.222 -22.693 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.134 0.866 4 N -0.358 5.358 5 C 0.305 3.695 6 O -0.394 6.394 7 C -0.237 4.237 8 C 0.418 3.582 9 F -0.153 7.153 10 F -0.164 7.164 11 F -0.154 7.154 12 C 0.296 3.704 13 O -0.432 6.432 14 N -0.320 5.320 15 C -0.031 4.031 16 C 0.006 3.994 17 N -0.322 5.322 18 C -0.406 4.406 19 H 0.101 0.899 20 C -0.161 4.161 21 N -0.517 5.517 22 Si 0.661 3.339 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.182 1.182 26 C 0.003 3.997 27 C -0.043 4.043 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.250 0.750 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.638 -6.919 -22.552 24.041 hybrid contribution 1.311 -0.373 -0.167 1.373 sum -3.326 -7.292 -22.718 24.091 Atomic orbital electron populations 1.22210 0.92367 1.03385 1.04066 1.20831 0.96059 0.98150 0.83259 0.86635 1.45605 1.66969 1.14997 1.08273 1.19726 0.78456 0.87257 0.84080 1.90847 1.48982 1.15035 1.84571 1.22952 1.08822 0.99764 0.92121 1.19672 0.74358 0.81033 0.83099 1.93241 1.70080 1.59355 1.92636 1.93205 1.88900 1.80730 1.53604 1.93226 1.38838 1.88458 1.94914 1.20376 0.79189 0.86207 0.84678 1.90642 1.47410 1.19354 1.85823 1.47972 1.55172 1.21359 1.07520 1.22509 0.98163 0.97015 0.85427 1.21802 0.92842 0.85554 0.99232 1.44287 1.65852 1.17280 1.04817 1.18750 1.07819 1.26932 0.87065 0.89879 1.25208 0.97921 0.98342 0.94609 1.70102 1.33617 1.46997 1.00943 0.87611 0.88990 0.77569 0.79684 1.21900 1.21946 1.18213 1.21335 0.94608 0.94407 0.89321 1.22624 0.96955 0.83548 1.01222 0.90727 0.91652 0.90082 0.74977 0.84101 0.84141 0.90912 0.89732 0.94894 0.90347 0.92624 0.95500 0.90391 0.90066 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.13 37.15 0.34 -1.19 16 2 C 0.12 1.42 2.12 -69.08 -0.15 1.27 16 3 H 0.12 1.40 6.63 -51.93 -0.34 1.06 16 4 N -0.70 -6.81 5.02 -54.94 -0.28 -7.09 16 5 C 0.52 5.15 7.56 -10.99 -0.08 5.07 16 6 O -0.52 -7.08 14.50 5.55 0.08 -7.00 16 7 C -0.20 -1.19 5.75 -27.88 -0.16 -1.35 16 8 C 0.47 4.23 2.89 37.16 0.11 4.33 16 9 F -0.17 -1.95 16.40 2.25 0.04 -1.92 16 10 F -0.18 -1.51 17.32 2.25 0.04 -1.48 16 11 F -0.17 -1.86 16.40 2.25 0.04 -1.82 16 12 C 0.51 7.26 7.01 -10.98 -0.08 7.18 16 13 O -0.55 -9.03 15.28 5.56 0.09 -8.95 16 14 N -0.59 -9.03 2.94 -172.21 -0.51 -9.54 16 15 C 0.09 1.60 6.61 -3.37 -0.02 1.58 16 16 C 0.13 2.73 4.55 -3.37 -0.02 2.71 16 17 N -0.60 -13.17 2.71 -171.77 -0.47 -13.64 16 18 C -0.28 -7.26 9.85 -15.06 -0.15 -7.41 16 19 H 0.08 2.30 8.05 -52.49 -0.42 1.87 16 20 C 0.04 1.12 4.82 -17.43 -0.08 1.04 16 21 N -0.88 -25.44 13.97 55.49 0.78 -24.66 16 22 Si 0.83 20.46 26.44 -169.99 -4.49 15.97 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.26 -6.04 4.95 56.52 0.28 -5.76 16 26 C 0.13 2.27 6.67 -3.60 -0.02 2.25 16 27 C 0.08 1.13 5.61 -3.60 -0.02 1.11 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 6.04 -51.92 -0.31 0.40 16 31 H 0.41 3.46 7.72 -40.82 -0.31 3.14 16 32 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 36 H 0.03 0.70 6.76 -51.93 -0.35 0.35 16 37 H 0.08 1.74 5.58 -51.93 -0.29 1.45 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 41 H 0.08 0.89 4.55 -51.93 -0.24 0.66 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -32.90 348.32 -5.04 -37.94 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.26 Total: 0.33 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: -0.33 Total: 16.59 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.47 Total: -54.92 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.17 Total: -15.95 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.49 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.90 -5.04 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112880064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.569 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds