Wall clock time and date at job start Tue Mar 31 2020 21:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47361 * 2 1 4 4 N 1.46502 * 109.47328 * 240.00268 * 2 1 3 5 5 C 1.34772 * 120.00218 * 84.99612 * 4 2 1 6 6 O 1.21284 * 119.99766 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00164 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46969 * 180.02562 * 7 5 4 9 9 F 1.39899 * 109.47239 * 60.00502 * 8 7 5 10 10 F 1.39901 * 109.46735 * 180.02562 * 8 7 5 11 11 F 1.39893 * 109.47457 * 299.99926 * 8 7 5 12 12 C 1.50703 * 109.47314 * 120.00414 * 2 1 3 13 13 O 1.21273 * 120.00241 * 105.84869 * 12 2 1 14 14 N 1.34782 * 119.99908 * 285.84962 * 12 2 1 15 15 C 1.46962 * 120.59738 * 184.97801 * 14 12 2 16 16 C 1.53808 * 108.39996 * 124.75768 * 15 14 12 17 17 N 1.46970 * 108.57908 * 49.63817 * 16 15 14 18 18 C 1.36936 * 120.59428 * 124.62007 * 17 16 15 19 19 H 1.07988 * 120.00248 * 206.51972 * 18 17 16 20 20 C 1.38821 * 119.99546 * 26.52942 * 18 17 16 21 21 N 1.31617 * 119.99542 * 216.68323 * 20 18 17 22 22 Si 1.86796 * 120.00129 * 36.68394 * 20 18 17 23 23 H 1.48493 * 109.47172 * 95.85280 * 22 20 18 24 24 H 1.48504 * 109.46785 * 215.84885 * 22 20 18 25 25 H 1.48493 * 109.47291 * 335.84347 * 22 20 18 26 26 C 1.46959 * 118.81273 * 304.64975 * 17 16 15 27 27 C 1.46970 * 120.59187 * 5.25710 * 14 12 2 28 28 H 1.09000 * 109.47652 * 64.88777 * 1 2 3 29 29 H 1.09000 * 109.47382 * 184.89417 * 1 2 3 30 30 H 1.09008 * 109.47264 * 304.89076 * 1 2 3 31 31 H 0.97003 * 119.99946 * 265.00198 * 4 2 1 32 32 H 1.08993 * 109.47163 * 300.00333 * 7 5 4 33 33 H 1.09003 * 109.47275 * 60.00588 * 7 5 4 34 34 H 1.08993 * 109.61089 * 244.54611 * 15 14 12 35 35 H 1.09001 * 109.60490 * 5.04977 * 15 14 12 36 36 H 1.09006 * 109.74434 * 289.85030 * 16 15 14 37 37 H 1.08998 * 109.53238 * 169.30637 * 16 15 14 38 38 H 0.96995 * 119.99902 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.60886 * 295.48153 * 26 17 16 40 40 H 1.09002 * 109.75527 * 175.05076 * 26 17 16 41 41 H 1.09006 * 109.61052 * 354.95062 * 27 14 12 42 42 H 1.09006 * 109.60783 * 115.45669 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5877 8 6 2.7009 0.2547 -4.7587 9 9 3.5649 1.3091 -4.4442 10 9 3.1663 -0.4051 -5.9013 11 9 1.4189 0.7589 -5.0017 12 6 2.0323 -0.7105 1.2304 13 8 2.5049 -1.8235 1.1375 14 7 1.9564 -0.1090 2.4342 15 6 2.5399 -0.7423 3.6250 16 6 3.5228 0.2495 4.2700 17 7 2.8497 1.5477 4.4163 18 6 2.7716 2.1584 5.6394 19 1 1.9626 2.8416 5.8512 20 6 3.7327 1.8994 6.6070 21 7 3.3873 1.8284 7.8751 22 14 5.5161 1.6518 6.1094 23 1 6.2526 2.9331 6.2532 24 1 6.1357 0.6238 6.9838 25 1 5.5775 1.2013 4.6958 26 6 2.2612 2.1784 3.2265 27 6 1.2832 1.1893 2.5804 28 1 -0.3634 0.4361 -0.9305 29 1 -0.3634 -1.0239 0.0877 30 1 -0.3634 0.5879 0.8430 31 1 2.2490 -1.6317 -1.1527 32 1 3.6479 -1.1212 -3.3986 33 1 1.9759 -1.5505 -3.8327 34 1 1.7486 -0.9898 4.3326 35 1 3.0706 -1.6489 3.3342 36 1 4.4016 0.3625 3.6351 37 1 3.8222 -0.1200 5.2508 38 1 4.0589 1.6478 8.5512 39 1 3.0501 2.4288 2.5172 40 1 1.7280 3.0842 3.5153 41 1 0.9838 1.5587 1.5995 42 1 0.4044 1.0762 3.2154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112880064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:41 Heat of formation + Delta-G solvation = -207.176166 kcal Electronic energy + Delta-G solvation = -30233.991147 eV Core-core repulsion = 25413.552267 eV Total energy + Delta-G solvation = -4820.438880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.06555 -48.59012 -48.53313 -41.76250 -40.53642 -38.68868 -36.25600 -35.75672 -33.68192 -33.31626 -32.35169 -31.04939 -28.92868 -26.26418 -25.34799 -25.09820 -24.09012 -22.38645 -21.61945 -20.56396 -19.84239 -19.53834 -18.99409 -18.54978 -18.15354 -17.56957 -17.30163 -16.82376 -16.67848 -16.28868 -16.02993 -15.98925 -15.49261 -15.35378 -15.32214 -14.96428 -14.93103 -14.81865 -14.71227 -14.70208 -14.65989 -14.32087 -14.16450 -13.82614 -13.53696 -13.37622 -13.17255 -12.96807 -12.72180 -12.71385 -12.54336 -12.26211 -12.09576 -11.91629 -11.45557 -11.29615 -10.94113 -10.67373 -10.36256 -9.92288 -8.90660 -8.25105 -5.40605 1.26018 1.33439 1.40212 1.45263 1.48317 1.50737 1.81983 2.16141 2.43343 2.73017 2.91122 3.07552 3.09956 3.23110 3.36356 3.69598 3.98086 4.00435 4.09295 4.11916 4.17067 4.27229 4.28654 4.39905 4.54583 4.57798 4.62653 4.73240 4.75213 4.87140 4.98425 5.15044 5.16877 5.18874 5.41147 5.83794 6.10126 6.26864 6.33958 6.87840 6.92514 6.98133 7.60965 8.03485 8.92662 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.002599 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.631547 B =10772.789136 C =11081.778328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 H 0.111 0.889 4 N -0.699 5.699 5 C 0.519 3.481 6 O -0.560 6.560 7 C -0.184 4.184 8 C 0.466 3.534 9 F -0.191 7.191 10 F -0.179 7.179 11 F -0.187 7.187 12 C 0.513 3.487 13 O -0.571 6.571 14 N -0.595 5.595 15 C 0.105 3.895 16 C 0.131 3.869 17 N -0.612 5.612 18 C -0.261 4.261 19 H 0.059 0.941 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.892 3.108 23 H -0.302 1.302 24 H -0.297 1.297 25 H -0.242 1.242 26 C 0.123 3.877 27 C 0.092 3.908 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.421 0.579 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.005 -8.512 -25.269 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.129 0.871 4 N -0.353 5.353 5 C 0.306 3.694 6 O -0.438 6.438 7 C -0.223 4.223 8 C 0.412 3.588 9 F -0.172 7.172 10 F -0.161 7.161 11 F -0.168 7.168 12 C 0.301 3.699 13 O -0.452 6.452 14 N -0.327 5.327 15 C -0.019 4.019 16 C 0.005 3.995 17 N -0.337 5.337 18 C -0.389 4.389 19 H 0.077 0.923 20 C -0.208 4.208 21 N -0.568 5.568 22 Si 0.719 3.281 23 H -0.231 1.231 24 H -0.224 1.224 25 H -0.165 1.165 26 C -0.002 4.002 27 C -0.032 4.032 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.260 0.740 32 H 0.188 0.812 33 H 0.197 0.803 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.931 -8.240 -25.196 26.964 hybrid contribution 1.342 0.040 0.545 1.449 sum -3.590 -8.199 -24.652 26.226 Atomic orbital electron populations 1.22180 0.90666 1.03963 1.04569 1.20764 0.97233 0.97457 0.82425 0.87124 1.45574 1.66718 1.15292 1.07755 1.20283 0.77485 0.86835 0.84829 1.90837 1.50810 1.16943 1.85243 1.23026 1.11345 0.99191 0.88786 1.20116 0.73466 0.81070 0.84161 1.93203 1.70642 1.60562 1.92807 1.93211 1.88787 1.80435 1.53621 1.93197 1.39756 1.88797 1.95099 1.20828 0.78262 0.85929 0.84892 1.90636 1.48053 1.20359 1.86116 1.47996 1.55503 1.21800 1.07362 1.22159 0.97383 0.96182 0.86205 1.21736 0.93595 0.85717 0.98426 1.44411 1.66251 1.18010 1.04981 1.18739 1.06367 1.25311 0.88527 0.92296 1.25670 1.00828 0.99709 0.94588 1.70178 1.34375 1.50267 1.01974 0.86699 0.84732 0.76624 0.79999 1.23089 1.22383 1.16549 1.21561 0.95329 0.95529 0.87820 1.22568 0.95632 0.82077 1.02882 0.90430 0.91115 0.89301 0.73998 0.81151 0.80337 0.91167 0.89133 0.95222 0.92445 0.92856 0.94926 0.89986 0.86518 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.13 71.98 0.66 -1.76 16 2 C 0.13 2.55 2.12 44.24 0.09 2.64 16 3 H 0.11 2.36 6.63 -2.39 -0.02 2.34 16 4 N -0.70 -11.31 5.02 -446.11 -2.24 -13.55 16 5 C 0.52 8.83 7.56 87.66 0.66 9.49 16 6 O -0.56 -14.26 14.50 -3.04 -0.04 -14.31 16 7 C -0.18 -1.58 5.75 29.85 0.17 -1.41 16 8 C 0.47 7.36 2.89 71.98 0.21 7.57 16 9 F -0.19 -4.12 16.40 44.97 0.74 -3.38 16 10 F -0.18 -2.57 17.32 44.97 0.78 -1.79 16 11 F -0.19 -3.75 16.40 44.97 0.74 -3.01 16 12 C 0.51 13.18 7.01 87.66 0.61 13.79 16 13 O -0.57 -17.11 15.28 -3.01 -0.05 -17.16 16 14 N -0.60 -16.79 2.94 -817.15 -2.40 -19.19 16 15 C 0.10 3.48 6.61 86.56 0.57 4.05 16 16 C 0.13 5.29 4.55 86.56 0.39 5.69 16 17 N -0.61 -26.45 2.71 -697.35 -1.89 -28.34 16 18 C -0.26 -13.70 9.85 84.04 0.83 -12.88 16 19 H 0.06 3.33 8.05 -2.92 -0.02 3.31 16 20 C -0.01 -0.55 4.82 84.86 0.41 -0.14 16 21 N -0.92 -55.11 13.97 21.65 0.30 -54.81 16 22 Si 0.89 43.08 26.44 68.60 1.81 44.89 16 23 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.24 -10.88 4.95 99.48 0.49 -10.39 16 26 C 0.12 4.08 6.67 86.42 0.58 4.66 16 27 C 0.09 2.31 5.61 86.41 0.48 2.80 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.24 6.04 -2.38 -0.01 1.23 16 31 H 0.42 5.57 7.72 -92.71 -0.72 4.85 16 32 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 2.90 7.02 -2.39 -0.02 2.89 16 36 H 0.03 1.22 6.76 -2.38 -0.02 1.20 16 37 H 0.06 2.54 5.58 -2.39 -0.01 2.53 16 38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 41 H 0.12 2.15 4.55 -2.38 -0.01 2.14 16 42 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -72.58 348.32 3.58 -69.01 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.15 Total: 7.14 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: 5.67 Total: 34.50 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.23 Total: -115.89 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.09 Total: -31.46 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 2.25 Total: -8.18 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.81 Total: 44.89 kcal Total: -72.58 3.58 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112880064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.167 kcal (2) G-P(sol) polarization free energy of solvation -72.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds