Wall clock time and date at job start Tue Mar 31 2020 21:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47377 * 2 1 4 4 C 1.50705 * 109.46839 * 239.99461 * 2 1 3 5 5 O 1.21278 * 119.99972 * 264.68233 * 4 2 1 6 6 N 1.34777 * 119.99456 * 84.68867 * 4 2 1 7 7 C 1.47082 * 120.88353 * 354.62776 * 6 4 2 8 8 C 1.53239 * 108.52130 * 129.09186 * 7 6 4 9 9 N 1.46902 * 109.33937 * 53.82784 * 8 7 6 10 10 C 1.46898 * 110.99446 * 172.74604 * 9 8 7 11 11 C 1.50700 * 109.47717 * 294.30258 * 10 9 8 12 12 O 1.21298 * 119.99503 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00236 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99767 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99999 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99779 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47255 * 90.00278 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00377 * 18 16 14 21 21 H 1.48508 * 109.47233 * 330.00245 * 18 16 14 22 22 C 1.46898 * 111.26687 * 296.89261 * 9 8 7 23 23 C 1.47076 * 120.87657 * 174.90953 * 6 4 2 24 24 C 1.52999 * 109.47024 * 120.00086 * 2 1 3 25 25 F 1.39893 * 109.47249 * 179.97438 * 24 2 1 26 26 F 1.39898 * 109.46978 * 299.99581 * 24 2 1 27 27 F 1.39903 * 109.47393 * 59.99745 * 24 2 1 28 28 H 1.09001 * 109.46816 * 300.91726 * 1 2 3 29 29 H 1.08997 * 109.47159 * 60.91693 * 1 2 3 30 30 H 1.09000 * 109.47561 * 180.91958 * 1 2 3 31 31 H 1.08999 * 109.62653 * 248.79827 * 7 6 4 32 32 H 1.08996 * 109.62797 * 9.37815 * 7 6 4 33 33 H 1.09002 * 109.48958 * 293.86987 * 8 7 6 34 34 H 1.08999 * 109.49475 * 173.79232 * 8 7 6 35 35 H 1.09002 * 109.47414 * 54.30852 * 10 9 8 36 36 H 1.09004 * 109.46887 * 174.29926 * 10 9 8 37 37 H 0.96995 * 120.00127 * 359.97438 * 13 11 10 38 38 H 0.96993 * 119.99635 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49943 * 303.14693 * 22 9 8 40 40 H 1.09006 * 109.48729 * 183.06492 * 22 9 8 41 41 H 1.08996 * 109.63583 * 350.61937 * 23 6 4 42 42 H 1.09000 * 109.62932 * 111.20294 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2305 5 8 2.3261 -1.8859 -1.1745 6 7 2.1549 -0.0398 -2.3930 7 6 1.6951 1.3521 -2.5136 8 6 2.8304 2.1897 -3.1118 9 7 3.2806 1.5732 -4.3669 10 6 4.2480 2.4350 -5.0593 11 6 3.5652 3.7043 -5.4994 12 8 2.3885 3.8745 -5.2594 13 7 4.2621 4.6503 -6.1596 14 6 3.6410 5.8052 -6.5595 15 1 2.5932 5.9568 -6.3459 16 6 4.3595 6.7809 -7.2397 17 7 5.6343 6.5962 -7.5001 18 14 3.5131 8.3542 -7.7852 19 1 3.6239 9.3738 -6.7114 20 1 4.1624 8.8630 -9.0200 21 1 2.0800 8.0764 -8.0581 22 6 3.8405 0.2355 -4.1326 23 6 2.7466 -0.6822 -3.5763 24 6 2.0400 -0.7213 1.2492 25 9 3.4389 -0.7218 1.2490 26 9 1.5737 -0.0617 2.3915 27 9 1.5736 -2.0403 1.2493 28 1 -0.3633 0.5280 0.8817 29 1 -0.3633 0.4995 -0.8981 30 1 -0.3634 -1.0275 0.0165 31 1 0.8246 1.3947 -3.1682 32 1 1.4350 1.7385 -1.5282 33 1 3.6618 2.2308 -2.4080 34 1 2.4716 3.1995 -3.3108 35 1 5.0670 2.6788 -4.3825 36 1 4.6409 1.9125 -5.9315 37 1 5.2031 4.5144 -6.3511 38 1 6.1358 7.2771 -7.9752 39 1 4.6578 0.3038 -3.4147 40 1 4.2142 -0.1720 -5.0721 41 1 3.1817 -1.6408 -3.2936 42 1 1.9772 -0.8352 -4.3331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113211375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:27 Heat of formation + Delta-G solvation = -208.177619 kcal Electronic energy + Delta-G solvation = -30187.370171 eV Core-core repulsion = 25366.887864 eV Total energy + Delta-G solvation = -4820.482306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.32508 -47.85567 -47.71468 -40.61146 -38.82939 -37.41100 -34.92483 -34.27272 -33.75771 -31.34778 -31.12363 -28.97329 -26.86487 -25.97128 -24.42989 -23.90306 -23.16227 -21.15668 -19.57165 -19.33555 -18.87146 -18.59763 -17.94719 -17.63388 -17.20899 -16.24452 -15.85649 -15.53778 -15.19210 -14.92885 -14.75808 -14.66352 -14.59946 -14.20662 -14.19139 -14.08236 -13.95003 -13.88748 -13.82344 -13.70108 -13.55161 -13.16230 -12.72595 -12.53365 -12.32853 -12.05957 -11.83668 -11.68874 -11.59072 -11.33691 -11.30672 -11.21017 -10.91950 -10.44410 -10.28352 -10.11047 -9.54711 -9.05771 -8.49283 -8.07164 -7.98526 -6.48393 -3.89558 2.05035 2.32606 2.69174 3.12679 3.22333 3.27486 3.39156 3.64321 3.70687 3.80914 3.85620 4.15833 4.20233 4.43634 4.51680 4.73123 4.85510 4.94690 5.04637 5.06550 5.15287 5.17451 5.24177 5.29784 5.35072 5.55586 5.59990 5.70778 5.73822 5.80358 6.00087 6.01770 6.17335 6.28509 6.94687 7.14309 7.19552 7.48747 7.72390 7.98832 8.53603 9.10798 9.46685 9.97364 10.69168 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.002338 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.997819 B =11972.747119 C =12408.132061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.166 4.166 3 H 0.136 0.864 4 C 0.524 3.476 5 O -0.526 6.526 6 N -0.603 5.603 7 C 0.108 3.892 8 C 0.037 3.963 9 N -0.514 5.514 10 C 0.046 3.954 11 C 0.442 3.558 12 O -0.580 6.580 13 N -0.562 5.562 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.040 3.960 23 C 0.120 3.880 24 C 0.472 3.528 25 F -0.179 7.179 26 F -0.180 7.180 27 F -0.167 7.167 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -12.801 13.747 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 H 0.154 0.846 4 C 0.310 3.690 5 O -0.402 6.402 6 N -0.336 5.336 7 C -0.014 4.014 8 C -0.092 4.092 9 N -0.239 5.239 10 C -0.085 4.085 11 C 0.228 3.772 12 O -0.465 6.465 13 N -0.198 5.198 14 C -0.430 4.430 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.542 5.542 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.089 4.089 23 C -0.002 4.002 24 C 0.417 3.583 25 F -0.160 7.160 26 F -0.162 7.162 27 F -0.148 7.148 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.226 -13.259 13.539 19.947 hybrid contribution 1.205 0.915 0.203 1.527 sum -5.021 -12.344 13.742 19.142 Atomic orbital electron populations 1.21836 0.88752 1.04946 1.05111 1.22672 1.01874 1.02910 0.91374 0.84594 1.19700 0.78496 0.86941 0.83911 1.90789 1.49882 1.14964 1.84612 1.48148 1.60489 1.14383 1.10558 1.22083 0.98533 0.79302 1.01474 1.22671 0.96259 1.00840 0.89404 1.61503 1.38649 1.01488 1.22238 1.21859 0.93219 0.94486 0.98924 1.19686 0.87914 0.85147 0.84475 1.90470 1.16010 1.79883 1.60099 1.41875 1.12240 1.16101 1.49575 1.19691 0.96784 0.93339 1.33155 0.87845 1.25278 0.95568 0.99813 0.97231 1.69610 1.07419 1.35896 1.41241 0.85857 0.79347 0.81047 0.78042 1.20403 1.20905 1.19364 1.22528 0.95452 0.90212 1.00747 1.21769 0.96203 0.96193 0.86024 1.19808 0.75714 0.78133 0.84644 1.93209 1.29663 1.96421 1.96715 1.93188 1.88512 1.80861 1.53626 1.93230 1.88167 1.36769 1.96614 0.89738 0.89427 0.90352 0.89280 0.89695 0.95303 0.86321 0.93359 0.89096 0.77464 0.91795 0.94549 0.89203 0.88675 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.76 37.16 0.33 -0.69 16 2 C -0.17 -1.49 1.85 -91.77 -0.17 -1.66 16 3 H 0.14 0.94 6.49 -51.93 -0.34 0.60 16 4 C 0.52 6.21 6.55 -10.98 -0.07 6.13 16 5 O -0.53 -7.93 14.66 5.56 0.08 -7.85 16 6 N -0.60 -6.80 3.01 -172.46 -0.52 -7.31 16 7 C 0.11 1.16 5.95 -3.60 -0.02 1.13 16 8 C 0.04 0.50 5.26 -3.70 -0.02 0.48 16 9 N -0.51 -7.56 4.37 -235.76 -1.03 -8.59 16 10 C 0.05 0.75 5.45 -4.98 -0.03 0.72 16 11 C 0.44 9.63 7.44 -10.99 -0.08 9.55 16 12 O -0.58 -14.24 13.91 5.54 0.08 -14.17 16 13 N -0.56 -13.46 5.29 -10.96 -0.06 -13.52 16 14 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 15 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 16 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 17 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 18 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 23 C 0.12 1.35 6.58 -3.60 -0.02 1.33 16 24 C 0.47 5.07 2.48 37.16 0.09 5.16 16 25 F -0.18 -2.21 16.96 2.25 0.04 -2.17 16 26 F -0.18 -1.76 16.81 2.25 0.04 -1.73 16 27 F -0.17 -2.07 15.42 2.25 0.03 -2.03 16 28 H 0.08 0.45 7.83 -51.93 -0.41 0.04 16 29 H 0.09 0.51 7.37 -51.93 -0.38 0.13 16 30 H 0.08 0.59 7.78 -51.93 -0.40 0.19 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.66 5.22 -51.93 -0.27 0.39 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.12 1.98 5.76 -51.93 -0.30 1.68 16 35 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.09 1.34 7.97 -51.93 -0.41 0.92 16 37 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.93 7.99 -51.93 -0.41 0.52 16 41 H 0.09 1.08 7.10 -51.93 -0.37 0.71 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -31.58 353.03 -5.82 -37.40 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.24 Total: 7.42 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -0.26 Total: 14.98 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.88 Total: -52.47 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.16 Total: -22.02 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.93 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.58 -5.82 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113211375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.776 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds