Wall clock time and date at job start Tue Mar 31 2020 21:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47377 * 2 1 4 4 C 1.50705 * 109.46839 * 239.99461 * 2 1 3 5 5 O 1.21278 * 119.99972 * 264.68233 * 4 2 1 6 6 N 1.34777 * 119.99456 * 84.68867 * 4 2 1 7 7 C 1.47082 * 120.88353 * 354.62776 * 6 4 2 8 8 C 1.53239 * 108.52130 * 129.09186 * 7 6 4 9 9 N 1.46902 * 109.33937 * 53.82784 * 8 7 6 10 10 C 1.46898 * 110.99446 * 172.74604 * 9 8 7 11 11 C 1.50700 * 109.47717 * 294.30258 * 10 9 8 12 12 O 1.21298 * 119.99503 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00236 * 180.02562 * 11 10 9 14 14 C 1.37097 * 119.99767 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99999 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99779 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47255 * 90.00278 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00377 * 18 16 14 21 21 H 1.48508 * 109.47233 * 330.00245 * 18 16 14 22 22 C 1.46898 * 111.26687 * 296.89261 * 9 8 7 23 23 C 1.47076 * 120.87657 * 174.90953 * 6 4 2 24 24 C 1.52999 * 109.47024 * 120.00086 * 2 1 3 25 25 F 1.39893 * 109.47249 * 179.97438 * 24 2 1 26 26 F 1.39898 * 109.46978 * 299.99581 * 24 2 1 27 27 F 1.39903 * 109.47393 * 59.99745 * 24 2 1 28 28 H 1.09001 * 109.46816 * 300.91726 * 1 2 3 29 29 H 1.08997 * 109.47159 * 60.91693 * 1 2 3 30 30 H 1.09000 * 109.47561 * 180.91958 * 1 2 3 31 31 H 1.08999 * 109.62653 * 248.79827 * 7 6 4 32 32 H 1.08996 * 109.62797 * 9.37815 * 7 6 4 33 33 H 1.09002 * 109.48958 * 293.86987 * 8 7 6 34 34 H 1.08999 * 109.49475 * 173.79232 * 8 7 6 35 35 H 1.09002 * 109.47414 * 54.30852 * 10 9 8 36 36 H 1.09004 * 109.46887 * 174.29926 * 10 9 8 37 37 H 0.96995 * 120.00127 * 359.97438 * 13 11 10 38 38 H 0.96993 * 119.99635 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49943 * 303.14693 * 22 9 8 40 40 H 1.09006 * 109.48729 * 183.06492 * 22 9 8 41 41 H 1.08996 * 109.63583 * 350.61937 * 23 6 4 42 42 H 1.09000 * 109.62932 * 111.20294 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2305 5 8 2.3261 -1.8859 -1.1745 6 7 2.1549 -0.0398 -2.3930 7 6 1.6951 1.3521 -2.5136 8 6 2.8304 2.1897 -3.1118 9 7 3.2806 1.5732 -4.3669 10 6 4.2480 2.4350 -5.0593 11 6 3.5652 3.7043 -5.4994 12 8 2.3885 3.8745 -5.2594 13 7 4.2621 4.6503 -6.1596 14 6 3.6410 5.8052 -6.5595 15 1 2.5932 5.9568 -6.3459 16 6 4.3595 6.7809 -7.2397 17 7 5.6343 6.5962 -7.5001 18 14 3.5131 8.3542 -7.7852 19 1 3.6239 9.3738 -6.7114 20 1 4.1624 8.8630 -9.0200 21 1 2.0800 8.0764 -8.0581 22 6 3.8405 0.2355 -4.1326 23 6 2.7466 -0.6822 -3.5763 24 6 2.0400 -0.7213 1.2492 25 9 3.4389 -0.7218 1.2490 26 9 1.5737 -0.0617 2.3915 27 9 1.5736 -2.0403 1.2493 28 1 -0.3633 0.5280 0.8817 29 1 -0.3633 0.4995 -0.8981 30 1 -0.3634 -1.0275 0.0165 31 1 0.8246 1.3947 -3.1682 32 1 1.4350 1.7385 -1.5282 33 1 3.6618 2.2308 -2.4080 34 1 2.4716 3.1995 -3.3108 35 1 5.0670 2.6788 -4.3825 36 1 4.6409 1.9125 -5.9315 37 1 5.2031 4.5144 -6.3511 38 1 6.1358 7.2771 -7.9752 39 1 4.6578 0.3038 -3.4147 40 1 4.2142 -0.1720 -5.0721 41 1 3.1817 -1.6408 -3.2936 42 1 1.9772 -0.8352 -4.3331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113211375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:26 Heat of formation + Delta-G solvation = -230.625405 kcal Electronic energy + Delta-G solvation = -30188.343580 eV Core-core repulsion = 25366.887864 eV Total energy + Delta-G solvation = -4821.455715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.17688 -48.69754 -48.60368 -41.56680 -40.30989 -38.72619 -36.10968 -35.67693 -34.91105 -33.24010 -32.08837 -30.20630 -27.60380 -27.38860 -25.78120 -24.99383 -24.13914 -22.09942 -21.04625 -20.43691 -19.89362 -19.70030 -19.45459 -18.49133 -18.12847 -17.76088 -16.87641 -16.60419 -16.43018 -16.37078 -16.07379 -15.62201 -15.55030 -15.42291 -15.32013 -15.27394 -15.06552 -14.88018 -14.81516 -14.72710 -14.38686 -14.27690 -13.81815 -13.49100 -13.40299 -13.22889 -13.04415 -12.95504 -12.79273 -12.53639 -12.40201 -12.31226 -12.24637 -12.16319 -12.08961 -11.41579 -11.03120 -10.33414 -9.98130 -9.85477 -9.22821 -8.43801 -5.91801 1.18125 1.40004 1.44376 1.47845 1.56425 1.84891 2.08923 2.29934 2.59367 2.69697 2.85678 2.94564 3.23834 3.38220 3.41503 3.74518 3.80951 3.87410 3.96042 4.14117 4.21446 4.26462 4.43030 4.46417 4.51608 4.57466 4.59668 4.64369 4.71416 4.82278 4.93145 5.03356 5.07830 5.29931 5.44436 5.80238 6.05008 6.12136 6.19768 6.63452 6.81904 7.16305 7.60601 8.15159 8.73642 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.002338 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.997819 B =11972.747119 C =12408.132061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 H 0.162 0.838 4 C 0.522 3.478 5 O -0.562 6.562 6 N -0.601 5.601 7 C 0.116 3.884 8 C 0.037 3.963 9 N -0.530 5.530 10 C 0.058 3.942 11 C 0.444 3.556 12 O -0.609 6.609 13 N -0.576 5.576 14 C -0.328 4.328 15 H 0.082 0.918 16 C -0.014 4.014 17 N -0.923 5.923 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.275 1.275 21 H -0.271 1.271 22 C 0.045 3.955 23 C 0.120 3.880 24 C 0.468 3.532 25 F -0.191 7.191 26 F -0.174 7.174 27 F -0.179 7.179 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.039 0.961 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 -12.681 14.268 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 H 0.179 0.821 4 C 0.310 3.690 5 O -0.441 6.441 6 N -0.333 5.333 7 C -0.006 4.006 8 C -0.092 4.092 9 N -0.255 5.255 10 C -0.073 4.073 11 C 0.232 3.768 12 O -0.495 6.495 13 N -0.213 5.213 14 C -0.457 4.457 15 H 0.100 0.900 16 C -0.214 4.214 17 N -0.564 5.564 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.196 1.196 22 C -0.083 4.083 23 C -0.002 4.002 24 C 0.413 3.587 25 F -0.172 7.172 26 F -0.155 7.155 27 F -0.161 7.161 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.549 -13.146 14.068 20.338 hybrid contribution 1.282 0.804 0.090 1.516 sum -5.267 -12.342 14.158 19.507 Atomic orbital electron populations 1.21909 0.86906 1.04889 1.06740 1.22754 1.03250 1.03310 0.88891 0.82084 1.20125 0.77734 0.86588 0.84577 1.90776 1.51511 1.16638 1.85194 1.48186 1.60123 1.14453 1.10520 1.22078 0.97001 0.78541 1.03005 1.22595 0.97430 0.99795 0.89365 1.61488 1.38687 1.02383 1.22912 1.21723 0.93227 0.92101 1.00271 1.20665 0.87610 0.86062 0.82489 1.90453 1.17618 1.80780 1.60636 1.41954 1.12442 1.16243 1.50693 1.19658 0.96273 0.95116 1.34679 0.89972 1.26013 0.96168 1.02317 0.96895 1.69675 1.08247 1.36858 1.41646 0.84956 0.78151 0.77518 0.77922 1.19708 1.19980 1.19599 1.22554 0.95509 0.88471 1.01746 1.21762 0.96202 0.96066 0.86160 1.20092 0.75182 0.77842 0.85588 1.93183 1.30776 1.96449 1.96825 1.93199 1.88331 1.80570 1.53415 1.93204 1.88244 1.37914 1.96726 0.87767 0.88114 0.91328 0.89621 0.86466 0.94544 0.89497 0.91717 0.87085 0.77161 0.91452 0.94262 0.87594 0.88702 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.76 71.98 0.63 -0.98 16 2 C -0.16 -2.50 1.85 -11.54 -0.02 -2.52 16 3 H 0.16 1.67 6.49 -2.39 -0.02 1.65 16 4 C 0.52 11.50 6.55 87.66 0.57 12.07 16 5 O -0.56 -16.50 14.66 -3.02 -0.04 -16.55 16 6 N -0.60 -12.36 3.01 -817.94 -2.46 -14.82 16 7 C 0.12 2.21 5.95 86.35 0.51 2.73 16 8 C 0.04 0.95 5.26 86.38 0.45 1.41 16 9 N -0.53 -14.71 4.37 -899.80 -3.93 -18.64 16 10 C 0.06 1.79 5.45 85.56 0.47 2.26 16 11 C 0.44 19.34 7.44 87.66 0.65 19.99 16 12 O -0.61 -30.26 13.91 -3.09 -0.04 -30.30 16 13 N -0.58 -27.88 5.29 -306.98 -1.62 -29.50 16 14 C -0.33 -17.72 9.68 84.04 0.81 -16.91 16 15 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 16 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 17 N -0.92 -48.59 13.05 21.67 0.28 -48.31 16 18 Si 0.99 41.51 29.55 68.60 2.03 43.54 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 C 0.05 0.96 5.62 86.38 0.49 1.45 16 23 C 0.12 2.50 6.58 86.35 0.57 3.07 16 24 C 0.47 9.37 2.48 71.98 0.18 9.55 16 25 F -0.19 -4.53 16.96 44.97 0.76 -3.76 16 26 F -0.17 -3.07 16.81 44.97 0.76 -2.31 16 27 F -0.18 -4.34 15.42 44.97 0.69 -3.65 16 28 H 0.10 0.76 7.83 -2.39 -0.02 0.74 16 29 H 0.10 0.86 7.37 -2.39 -0.02 0.84 16 30 H 0.07 0.92 7.78 -2.39 -0.02 0.90 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 1.45 5.22 -2.39 -0.01 1.43 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 2.88 5.76 -2.39 -0.01 2.86 16 35 H 0.06 1.82 8.12 -2.39 -0.02 1.81 16 36 H 0.11 3.02 7.97 -2.38 -0.02 3.00 16 37 H 0.39 18.34 7.90 -92.71 -0.73 17.61 16 38 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.92 7.99 -2.38 -0.02 1.90 16 41 H 0.09 2.02 7.10 -2.39 -0.02 2.01 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -68.91 353.03 2.55 -66.36 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.35 Total: 26.11 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 5.78 Total: 31.83 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -7.73 Total: -111.27 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.85 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 2.21 Total: -9.73 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.91 2.55 -66.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113211375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.264 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds