Wall clock time and date at job start Tue Mar 31 2020 21:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.50704 * 109.46811 * 119.99918 * 2 1 3 5 5 O 1.21281 * 120.00017 * 98.10623 * 4 2 1 6 6 N 1.34766 * 119.99941 * 278.09738 * 4 2 1 7 7 C 1.47084 * 120.88532 * 354.97302 * 6 4 2 8 8 C 1.53237 * 108.52186 * 231.20490 * 7 6 4 9 9 N 1.46894 * 109.34138 * 306.16932 * 8 7 6 10 10 C 1.46908 * 110.99954 * 187.25322 * 9 8 7 11 11 C 1.50695 * 109.46887 * 169.99655 * 10 9 8 12 12 O 1.21291 * 120.00560 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00176 * 179.72862 * 13 11 10 15 15 H 1.08002 * 120.00316 * 0.27106 * 14 13 11 16 16 C 1.38954 * 120.00188 * 180.27370 * 14 13 11 17 17 N 1.31414 * 119.99648 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46868 * 120.00439 * 18 16 14 21 21 H 1.48503 * 109.47329 * 239.99677 * 18 16 14 22 22 C 1.46895 * 111.27232 * 63.10464 * 9 8 7 23 23 C 1.47085 * 120.88328 * 174.99464 * 6 4 2 24 24 C 1.53005 * 109.46852 * 239.99717 * 2 1 3 25 25 F 1.39895 * 109.47302 * 300.00071 * 24 2 1 26 26 F 1.39901 * 109.47093 * 60.00378 * 24 2 1 27 27 F 1.39903 * 109.46496 * 180.02562 * 24 2 1 28 28 H 1.09008 * 109.47013 * 177.36819 * 1 2 3 29 29 H 1.08997 * 109.47176 * 297.36165 * 1 2 3 30 30 H 1.09000 * 109.47098 * 57.36810 * 1 2 3 31 31 H 1.08996 * 109.63151 * 111.49082 * 7 6 4 32 32 H 1.09000 * 109.62278 * 350.91440 * 7 6 4 33 33 H 1.09004 * 109.49400 * 186.20470 * 8 7 6 34 34 H 1.09008 * 109.49288 * 66.12563 * 8 7 6 35 35 H 1.09002 * 109.46769 * 49.99907 * 10 9 8 36 36 H 1.08999 * 109.47081 * 289.99489 * 10 9 8 37 37 H 0.96996 * 119.99785 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99900 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.49349 * 56.85141 * 22 9 8 40 40 H 1.09000 * 109.49680 * 176.93945 * 22 9 8 41 41 H 1.09001 * 109.62464 * 248.50736 * 23 6 4 42 42 H 1.08998 * 109.62485 * 9.07899 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3741 -1.8721 1.1630 6 7 2.1019 -0.0548 2.4059 7 6 1.7977 1.3819 2.4882 8 6 2.9526 2.0834 3.2108 9 7 3.1910 1.4241 4.5016 10 6 4.1730 2.1698 5.3003 11 6 4.2105 1.6114 6.6994 12 8 3.4904 0.6833 7.0016 13 7 5.0441 2.1433 7.6152 14 6 5.0742 1.6389 8.8896 15 1 4.4330 0.8125 9.1587 16 6 5.9296 2.1910 9.8353 17 7 6.7101 3.1963 9.5079 18 14 5.9701 1.5043 11.5720 19 1 5.0035 0.3824 11.6833 20 1 7.3372 1.0115 11.8776 21 1 5.6022 2.5727 12.5356 22 6 3.6124 0.0290 4.3177 23 6 2.4845 -0.7568 3.6405 24 6 2.0400 -0.7213 -1.2493 25 9 1.5737 -2.0403 -1.2492 26 9 1.5737 -0.0618 -2.3916 27 9 3.4390 -0.7218 -1.2489 28 1 -0.3633 -1.0267 -0.0472 29 1 -0.3633 0.4723 0.9127 30 1 -0.3633 0.5542 -0.8654 31 1 0.8732 1.5291 3.0464 32 1 1.6914 1.7917 1.4837 33 1 2.6951 3.1292 3.3785 34 1 3.8536 2.0237 2.6001 35 1 3.8887 3.2214 5.3362 36 1 5.1587 2.0752 4.8448 37 1 5.6202 2.8852 7.3735 38 1 7.3075 3.5814 10.1679 39 1 4.5041 -0.0021 3.6916 40 1 3.8333 -0.4153 5.2882 41 1 1.6260 -0.8152 4.3095 42 1 2.8322 -1.7609 3.3979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113211384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:32 Heat of formation + Delta-G solvation = -207.139880 kcal Electronic energy + Delta-G solvation = -30087.372543 eV Core-core repulsion = 25266.935236 eV Total energy + Delta-G solvation = -4820.437307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.34982 -47.88314 -47.73589 -40.60776 -38.81479 -37.41152 -34.93452 -34.24607 -33.77066 -31.33543 -31.12446 -28.97652 -26.89338 -25.94488 -24.43752 -23.98047 -23.10563 -21.18109 -19.58341 -19.31821 -18.88439 -18.62437 -17.92697 -17.65823 -17.24032 -16.11036 -15.94858 -15.65490 -15.17876 -14.88895 -14.75365 -14.68730 -14.58520 -14.22574 -14.12975 -14.01401 -13.98960 -13.90833 -13.84808 -13.71923 -13.64754 -13.13744 -12.74470 -12.57291 -12.43409 -12.09608 -11.83205 -11.65461 -11.58903 -11.43367 -11.21419 -11.08547 -10.94770 -10.37575 -10.26986 -10.10658 -9.53457 -9.04702 -8.47693 -8.05708 -7.96822 -6.46593 -3.87467 2.06800 2.28889 2.67674 3.13120 3.24401 3.31155 3.35781 3.60019 3.65829 3.82176 3.86324 4.14098 4.18648 4.37689 4.46303 4.67540 4.82699 4.90251 4.99006 5.01692 5.10802 5.18735 5.21621 5.33416 5.47348 5.52909 5.56758 5.65165 5.74092 5.82081 5.96826 6.11997 6.18746 6.38266 6.95866 7.15754 7.20371 7.51082 7.73749 8.01222 8.55772 9.13145 9.48715 9.99643 10.71096 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.002169 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.460001 B =12905.464894 C =13057.284599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.165 4.165 3 H 0.135 0.865 4 C 0.522 3.478 5 O -0.523 6.523 6 N -0.603 5.603 7 C 0.108 3.892 8 C 0.038 3.962 9 N -0.514 5.514 10 C 0.047 3.953 11 C 0.442 3.558 12 O -0.578 6.578 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.039 3.961 23 C 0.121 3.879 24 C 0.471 3.529 25 F -0.166 7.166 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.029 0.971 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 0.090 -20.918 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 H 0.153 0.847 4 C 0.307 3.693 5 O -0.398 6.398 6 N -0.336 5.336 7 C -0.015 4.015 8 C -0.092 4.092 9 N -0.239 5.239 10 C -0.085 4.085 11 C 0.228 3.772 12 O -0.462 6.462 13 N -0.199 5.199 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.089 4.089 23 C -0.001 4.001 24 C 0.416 3.584 25 F -0.147 7.147 26 F -0.163 7.163 27 F -0.159 7.159 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.772 -1.094 -20.381 23.079 hybrid contribution 1.409 0.433 0.109 1.478 sum -9.363 -0.661 -20.272 22.340 Atomic orbital electron populations 1.21808 0.88763 1.05001 1.04916 1.22693 1.01800 1.02814 0.91473 0.84716 1.19697 0.78697 0.86992 0.83905 1.90808 1.48065 1.16333 1.84627 1.48149 1.67341 1.10247 1.07866 1.22012 0.99357 0.79354 1.00781 1.22505 0.97198 0.98867 0.90582 1.61518 1.46111 1.01961 1.14305 1.21855 0.94022 0.98472 0.94111 1.19688 0.84439 0.86881 0.86224 1.90484 1.44480 1.30952 1.80329 1.41879 1.35720 1.32115 1.10188 1.19745 1.21525 1.15925 0.85612 0.87800 1.25273 0.96036 0.96243 1.00392 1.69617 1.24728 1.24036 1.35860 0.85801 0.78146 0.78858 0.81557 1.19184 1.20757 1.20727 1.22670 0.94831 0.88874 1.02531 1.21848 0.98723 0.96296 0.83203 1.19817 0.75774 0.78190 0.84577 1.93231 1.88157 1.36758 1.96599 1.93184 1.88531 1.80874 1.53707 1.93216 1.29594 1.96417 1.96700 0.90336 0.89531 0.89811 0.89594 0.89705 0.89159 0.94504 0.89124 0.93360 0.77493 0.91880 0.95321 0.86410 0.89871 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.92 37.16 0.33 -0.53 16 2 C -0.17 -1.35 1.92 -91.76 -0.18 -1.52 16 3 H 0.14 0.72 6.19 -51.93 -0.32 0.40 16 4 C 0.52 6.16 6.58 -10.99 -0.07 6.08 16 5 O -0.52 -8.21 14.56 5.56 0.08 -8.13 16 6 N -0.60 -6.76 3.01 -172.46 -0.52 -7.28 16 7 C 0.11 0.90 6.14 -3.60 -0.02 0.88 16 8 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 9 N -0.51 -7.58 4.37 -235.77 -1.03 -8.61 16 10 C 0.05 0.76 5.45 -4.97 -0.03 0.73 16 11 C 0.44 9.82 7.44 -10.99 -0.08 9.74 16 12 O -0.58 -14.64 13.91 5.55 0.08 -14.56 16 13 N -0.56 -13.68 5.29 -10.96 -0.06 -13.73 16 14 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 15 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 18 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.04 0.60 5.26 -3.70 -0.02 0.58 16 23 C 0.12 1.63 6.61 -3.60 -0.02 1.60 16 24 C 0.47 4.85 2.47 37.16 0.09 4.94 16 25 F -0.17 -2.05 15.42 2.25 0.03 -2.01 16 26 F -0.18 -1.64 16.85 2.25 0.04 -1.61 16 27 F -0.18 -2.16 16.91 2.25 0.04 -2.12 16 28 H 0.08 0.55 7.73 -51.92 -0.40 0.15 16 29 H 0.09 0.41 7.81 -51.93 -0.41 0.00 16 30 H 0.08 0.35 7.88 -51.93 -0.41 -0.06 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.43 5.50 -51.93 -0.29 0.14 16 33 H 0.09 0.77 7.99 -51.93 -0.41 0.36 16 34 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.09 1.30 7.97 -51.93 -0.41 0.89 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.12 2.20 5.76 -51.93 -0.30 1.90 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -32.60 353.75 -5.83 -38.43 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.26 Total: 6.82 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -0.26 Total: 15.14 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.88 Total: -52.90 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.69 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.11 Total: -5.74 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.60 -5.83 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113211384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.710 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds