Wall clock time and date at job start Tue Mar 31 2020 21:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.50704 * 109.46811 * 119.99918 * 2 1 3 5 5 O 1.21281 * 120.00017 * 98.10623 * 4 2 1 6 6 N 1.34766 * 119.99941 * 278.09738 * 4 2 1 7 7 C 1.47084 * 120.88532 * 354.97302 * 6 4 2 8 8 C 1.53237 * 108.52186 * 231.20490 * 7 6 4 9 9 N 1.46894 * 109.34138 * 306.16932 * 8 7 6 10 10 C 1.46908 * 110.99954 * 187.25322 * 9 8 7 11 11 C 1.50695 * 109.46887 * 169.99655 * 10 9 8 12 12 O 1.21291 * 120.00560 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00176 * 179.72862 * 13 11 10 15 15 H 1.08002 * 120.00316 * 0.27106 * 14 13 11 16 16 C 1.38954 * 120.00188 * 180.27370 * 14 13 11 17 17 N 1.31414 * 119.99648 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46868 * 120.00439 * 18 16 14 21 21 H 1.48503 * 109.47329 * 239.99677 * 18 16 14 22 22 C 1.46895 * 111.27232 * 63.10464 * 9 8 7 23 23 C 1.47085 * 120.88328 * 174.99464 * 6 4 2 24 24 C 1.53005 * 109.46852 * 239.99717 * 2 1 3 25 25 F 1.39895 * 109.47302 * 300.00071 * 24 2 1 26 26 F 1.39901 * 109.47093 * 60.00378 * 24 2 1 27 27 F 1.39903 * 109.46496 * 180.02562 * 24 2 1 28 28 H 1.09008 * 109.47013 * 177.36819 * 1 2 3 29 29 H 1.08997 * 109.47176 * 297.36165 * 1 2 3 30 30 H 1.09000 * 109.47098 * 57.36810 * 1 2 3 31 31 H 1.08996 * 109.63151 * 111.49082 * 7 6 4 32 32 H 1.09000 * 109.62278 * 350.91440 * 7 6 4 33 33 H 1.09004 * 109.49400 * 186.20470 * 8 7 6 34 34 H 1.09008 * 109.49288 * 66.12563 * 8 7 6 35 35 H 1.09002 * 109.46769 * 49.99907 * 10 9 8 36 36 H 1.08999 * 109.47081 * 289.99489 * 10 9 8 37 37 H 0.96996 * 119.99785 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99900 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.49349 * 56.85141 * 22 9 8 40 40 H 1.09000 * 109.49680 * 176.93945 * 22 9 8 41 41 H 1.09001 * 109.62464 * 248.50736 * 23 6 4 42 42 H 1.08998 * 109.62485 * 9.07899 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3741 -1.8721 1.1630 6 7 2.1019 -0.0548 2.4059 7 6 1.7977 1.3819 2.4882 8 6 2.9526 2.0834 3.2108 9 7 3.1910 1.4241 4.5016 10 6 4.1730 2.1698 5.3003 11 6 4.2105 1.6114 6.6994 12 8 3.4904 0.6833 7.0016 13 7 5.0441 2.1433 7.6152 14 6 5.0742 1.6389 8.8896 15 1 4.4330 0.8125 9.1587 16 6 5.9296 2.1910 9.8353 17 7 6.7101 3.1963 9.5079 18 14 5.9701 1.5043 11.5720 19 1 5.0035 0.3824 11.6833 20 1 7.3372 1.0115 11.8776 21 1 5.6022 2.5727 12.5356 22 6 3.6124 0.0290 4.3177 23 6 2.4845 -0.7568 3.6405 24 6 2.0400 -0.7213 -1.2493 25 9 1.5737 -2.0403 -1.2492 26 9 1.5737 -0.0618 -2.3916 27 9 3.4390 -0.7218 -1.2489 28 1 -0.3633 -1.0267 -0.0472 29 1 -0.3633 0.4723 0.9127 30 1 -0.3633 0.5542 -0.8654 31 1 0.8732 1.5291 3.0464 32 1 1.6914 1.7917 1.4837 33 1 2.6951 3.1292 3.3785 34 1 3.8536 2.0237 2.6001 35 1 3.8887 3.2214 5.3362 36 1 5.1587 2.0752 4.8448 37 1 5.6202 2.8852 7.3735 38 1 7.3075 3.5814 10.1679 39 1 4.5041 -0.0021 3.6916 40 1 3.8333 -0.4153 5.2882 41 1 1.6260 -0.8152 4.3095 42 1 2.8322 -1.7609 3.3979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113211384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:30 Heat of formation + Delta-G solvation = -231.263892 kcal Electronic energy + Delta-G solvation = -30088.418639 eV Core-core repulsion = 25266.935236 eV Total energy + Delta-G solvation = -4821.483402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.15487 -48.67212 -48.59168 -41.55582 -40.31976 -38.73113 -36.14402 -35.63251 -34.92187 -33.25788 -32.09492 -30.21067 -27.55777 -27.38822 -25.75712 -25.11996 -24.01882 -22.13795 -21.06088 -20.41364 -19.90669 -19.68787 -19.43829 -18.48418 -18.13114 -17.70169 -16.88405 -16.65877 -16.58879 -16.25710 -16.05853 -15.60069 -15.53061 -15.40039 -15.30844 -15.28051 -15.04223 -14.85973 -14.79585 -14.70782 -14.47469 -14.09866 -13.95577 -13.52620 -13.40509 -13.21264 -13.02383 -12.97865 -12.74221 -12.55447 -12.41151 -12.30085 -12.22051 -12.15771 -12.08456 -11.45482 -11.02406 -10.33976 -9.99516 -9.85564 -9.23159 -8.45764 -5.93586 1.22779 1.36704 1.42396 1.46359 1.55924 1.86191 2.07668 2.28689 2.61118 2.69914 2.89356 2.97384 3.21738 3.36721 3.44208 3.75597 3.81862 3.89303 3.97042 4.11565 4.21501 4.30117 4.43913 4.50281 4.54107 4.58087 4.61867 4.68062 4.72050 4.82739 4.88903 5.05436 5.11453 5.30007 5.42726 5.79165 6.02947 6.14154 6.23727 6.62220 6.84774 7.15067 7.59054 8.14633 8.71869 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.002169 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.460001 B =12905.464894 C =13057.284599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 H 0.173 0.827 4 C 0.517 3.483 5 O -0.571 6.571 6 N -0.600 5.600 7 C 0.105 3.895 8 C 0.034 3.966 9 N -0.528 5.528 10 C 0.059 3.941 11 C 0.441 3.559 12 O -0.613 6.613 13 N -0.576 5.576 14 C -0.328 4.328 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.990 3.010 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.271 1.271 22 C 0.048 3.952 23 C 0.130 3.870 24 C 0.464 3.536 25 F -0.183 7.183 26 F -0.172 7.172 27 F -0.192 7.192 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 2.341 -22.358 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 H 0.191 0.809 4 C 0.305 3.695 5 O -0.450 6.450 6 N -0.332 5.332 7 C -0.016 4.016 8 C -0.094 4.094 9 N -0.253 5.253 10 C -0.072 4.072 11 C 0.228 3.772 12 O -0.499 6.499 13 N -0.213 5.213 14 C -0.458 4.458 15 H 0.097 0.903 16 C -0.213 4.213 17 N -0.563 5.563 18 Si 0.814 3.186 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.196 1.196 22 C -0.081 4.081 23 C 0.007 3.993 24 C 0.410 3.590 25 F -0.165 7.165 26 F -0.154 7.154 27 F -0.174 7.174 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.771 1.205 -21.850 24.848 hybrid contribution 1.681 -0.290 0.479 1.771 sum -10.091 0.915 -21.371 23.651 Atomic orbital electron populations 1.21903 0.86714 1.04687 1.06997 1.22771 1.03204 1.03518 0.87994 0.80935 1.20338 0.77743 0.86594 0.84842 1.90791 1.50113 1.18654 1.85424 1.48188 1.66748 1.11484 1.06817 1.22337 0.98841 0.77148 1.03296 1.22730 0.98242 1.00142 0.88278 1.61491 1.45333 1.01529 1.16988 1.21736 0.95606 0.99545 0.90306 1.20808 0.82536 0.85695 0.88122 1.90469 1.45487 1.32360 1.81586 1.41952 1.36752 1.32671 1.09954 1.19663 1.22322 1.16275 0.87520 0.90338 1.25993 0.95354 0.96390 1.03582 1.69672 1.24974 1.24560 1.37049 0.84912 0.78163 0.78184 0.77350 1.19837 1.19864 1.19606 1.22414 0.95546 0.89796 1.00351 1.21519 0.97782 0.95728 0.84278 1.20201 0.75171 0.77826 0.85815 1.93198 1.88269 1.38278 1.96744 1.93200 1.88297 1.80474 1.53389 1.93188 1.30903 1.96446 1.96835 0.92013 0.87718 0.87350 0.88588 0.85261 0.86349 0.93908 0.86179 0.91918 0.77046 0.91392 0.95482 0.90550 0.90466 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.92 71.98 0.64 -0.55 16 2 C -0.15 -2.00 1.92 -11.53 -0.02 -2.03 16 3 H 0.17 0.89 6.19 -2.39 -0.01 0.87 16 4 C 0.52 11.40 6.58 87.66 0.58 11.97 16 5 O -0.57 -18.12 14.56 -3.03 -0.04 -18.16 16 6 N -0.60 -12.28 3.01 -817.94 -2.46 -14.74 16 7 C 0.11 1.31 6.14 86.35 0.53 1.84 16 8 C 0.03 0.56 5.62 86.38 0.49 1.05 16 9 N -0.53 -14.69 4.37 -899.83 -3.93 -18.62 16 10 C 0.06 1.83 5.45 85.55 0.47 2.30 16 11 C 0.44 19.84 7.44 87.66 0.65 20.49 16 12 O -0.61 -32.13 13.91 -3.07 -0.04 -32.18 16 13 N -0.58 -28.51 5.29 -306.99 -1.62 -30.13 16 14 C -0.33 -18.23 9.68 84.04 0.81 -17.41 16 15 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 16 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 17 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 18 Si 0.99 42.52 29.55 68.60 2.03 44.54 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 C 0.05 1.48 5.26 86.38 0.45 1.93 16 23 C 0.13 3.53 6.61 86.35 0.57 4.11 16 24 C 0.46 8.74 2.47 71.98 0.18 8.92 16 25 F -0.18 -4.47 15.42 44.97 0.69 -3.77 16 26 F -0.17 -2.68 16.85 44.97 0.76 -1.92 16 27 F -0.19 -4.45 16.91 44.97 0.76 -3.69 16 28 H 0.06 0.75 7.73 -2.38 -0.02 0.73 16 29 H 0.10 0.51 7.81 -2.39 -0.02 0.49 16 30 H 0.11 0.40 7.88 -2.39 -0.02 0.39 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 0.48 5.50 -2.39 -0.01 0.47 16 33 H 0.12 1.38 7.99 -2.39 -0.02 1.36 16 34 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.12 3.06 7.97 -2.39 -0.02 3.04 16 36 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 37 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 38 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 3.02 5.76 -2.39 -0.01 3.00 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 2.41 7.04 -2.39 -0.02 2.39 16 Total: -1.00 -75.02 353.75 2.58 -72.44 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.35 Total: 22.55 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 5.81 Total: 32.37 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -7.73 Total: -112.18 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.09 Total: -50.34 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 2.21 Total: -9.38 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -75.02 2.58 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113211384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.819 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds