Wall clock time and date at job start Tue Mar 31 2020 21:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99665 * 2 1 4 4 C 1.52999 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46920 * 64.99972 * 4 3 2 6 6 C 1.35890 * 119.60720 * 270.25409 * 5 4 3 7 7 C 1.35982 * 120.59087 * 180.21899 * 6 5 4 8 8 N 1.40101 * 120.09181 * 179.78787 * 7 6 5 9 9 C 1.34779 * 119.99647 * 235.28795 * 8 7 6 10 10 O 1.21403 * 120.00058 * 5.30620 * 9 8 7 11 11 C 1.49319 * 120.00100 * 185.31023 * 9 8 7 12 12 O 1.21367 * 119.99747 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00100 * 179.97438 * 11 9 8 14 14 C 1.46501 * 119.99544 * 179.97438 * 13 11 9 15 15 H 1.08996 * 109.47338 * 324.99748 * 14 13 11 16 16 C 1.52993 * 109.47461 * 85.00117 * 14 13 11 17 17 C 1.50706 * 109.46528 * 205.00019 * 14 13 11 18 18 H 1.08000 * 120.00295 * 354.39250 * 17 14 13 19 19 C 1.37879 * 119.99628 * 174.39447 * 17 14 13 20 20 N 1.31512 * 120.00152 * 0.62502 * 19 17 14 21 21 Si 1.86807 * 119.99758 * 180.90139 * 19 17 14 22 22 H 1.48500 * 109.46808 * 264.72859 * 21 19 17 23 23 H 1.48498 * 109.46940 * 24.72519 * 21 19 17 24 24 H 1.48496 * 109.46871 * 144.73048 * 21 19 17 25 25 C 1.40691 * 119.80754 * 359.50637 * 7 6 5 26 26 C 1.36321 * 119.23475 * 0.25781 * 25 7 6 27 27 C 1.34635 * 119.59750 * 90.00293 * 5 4 3 28 28 O 1.22086 * 119.91801 * 0.02562 * 27 5 4 29 29 H 1.08996 * 109.47116 * 299.99884 * 1 2 3 30 30 H 1.08997 * 109.47227 * 60.00346 * 1 2 3 31 31 H 1.09009 * 109.46591 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47028 * 59.99741 * 3 2 1 33 33 H 1.09004 * 109.47507 * 300.00100 * 3 2 1 34 34 H 1.08997 * 109.47134 * 305.00186 * 4 3 2 35 35 H 1.08998 * 109.46740 * 185.00146 * 4 3 2 36 36 H 1.08003 * 119.70193 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00706 * 55.29423 * 8 7 6 38 38 H 0.96996 * 119.99824 * 359.97438 * 13 11 9 39 39 H 1.08997 * 109.46965 * 296.81874 * 16 14 13 40 40 H 1.09002 * 109.47107 * 56.81152 * 16 14 13 41 41 H 1.08995 * 109.47400 * 176.81356 * 16 14 13 42 42 H 0.97000 * 119.99768 * 180.27245 * 20 19 17 43 43 H 1.08003 * 120.37995 * 180.27364 * 25 7 6 44 44 H 1.07998 * 120.29371 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0892 -0.7880 -1.3265 7 6 4.5012 -1.3848 -2.4768 8 7 4.6177 -2.7795 -2.5419 9 6 5.7858 -3.3415 -2.9112 10 8 6.7634 -2.6453 -3.0941 11 6 5.8774 -4.8205 -3.0955 12 8 4.9001 -5.5164 -2.9123 13 7 7.0452 -5.3824 -3.4653 14 6 7.1351 -6.8335 -3.6456 15 1 6.4951 -7.3306 -2.9167 16 6 6.6793 -7.2011 -5.0590 17 6 8.5616 -7.2769 -3.4466 18 1 9.3399 -6.5427 -3.2994 19 6 8.8732 -8.6200 -3.4523 20 7 7.9275 -9.5137 -3.6438 21 14 10.6375 -9.1707 -3.1805 22 1 11.2985 -9.3801 -4.4937 23 1 11.3697 -8.1275 -2.4185 24 1 10.6464 -10.4422 -2.4135 25 6 4.8042 -0.5982 -3.6032 26 6 4.6842 0.7572 -3.5205 27 6 4.2609 1.3400 -2.3139 28 8 4.1503 2.5529 -2.2294 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1767 0.0902 36 1 3.8531 -1.3937 -0.4641 37 1 3.8579 -3.3406 -2.3212 38 1 7.8261 -4.8261 -3.6121 39 1 5.6306 -6.9315 -5.1842 40 1 7.2830 -6.6601 -5.7877 41 1 6.7995 -8.2735 -5.2122 42 1 8.1461 -10.4587 -3.6439 43 1 5.1280 -1.0628 -4.5229 44 1 4.9120 1.3774 -4.3748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116728883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:43 Heat of formation + Delta-G solvation = -107.415205 kcal Electronic energy + Delta-G solvation = -28625.105628 eV Core-core repulsion = 24350.849448 eV Total energy + Delta-G solvation = -4274.256180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74866 -40.29476 -38.43930 -38.22810 -37.08496 -35.65003 -35.00856 -33.69805 -32.41135 -30.67966 -29.39087 -28.97161 -26.89186 -25.36830 -24.94312 -24.67435 -23.51859 -22.22309 -20.84069 -19.72697 -18.90579 -18.08700 -17.70198 -16.97489 -16.75643 -16.67880 -16.37578 -16.15613 -15.73892 -15.43215 -15.21021 -15.05262 -14.80273 -14.38111 -14.23501 -13.58734 -13.42469 -13.25030 -13.04417 -12.96189 -12.64916 -12.50877 -12.39658 -11.97027 -11.83750 -11.66546 -11.33873 -11.14278 -11.03885 -10.84205 -10.50184 -10.43633 -10.31528 -10.30888 -10.11973 -9.70982 -9.17824 -9.12009 -8.67321 -8.15872 -7.97047 -6.20380 -4.29134 0.59621 1.41816 1.86600 2.17844 2.80922 3.16773 3.22366 3.29754 3.33053 3.43124 3.66963 4.04456 4.28724 4.30873 4.37378 4.46874 4.65705 4.73067 4.74545 4.88530 4.91496 4.96388 5.06628 5.11449 5.14070 5.20805 5.26258 5.54466 5.76259 5.84979 6.10450 6.43757 6.55234 6.66753 6.78036 6.79599 6.98112 7.03398 7.18579 7.36031 7.59558 7.71959 7.76381 7.92335 7.97781 8.41564 8.59663 8.83017 9.37957 10.86936 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.002196 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.521452 B =12748.299855 C =13283.550131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.044 3.956 4 C 0.096 3.904 5 N -0.484 5.484 6 C 0.139 3.861 7 C 0.036 3.964 8 N -0.647 5.647 9 C 0.510 3.490 10 O -0.508 6.508 11 C 0.495 3.505 12 O -0.535 6.535 13 N -0.668 5.668 14 C 0.261 3.739 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.068 3.932 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.284 1.284 25 C 0.001 3.999 26 C -0.237 4.237 27 C 0.514 3.486 28 O -0.558 6.558 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.422 0.578 38 H 0.402 0.598 39 H 0.019 0.981 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.266 0.734 43 H 0.138 0.862 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 19.133 6.572 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.034 4.034 4 C -0.026 4.026 5 N -0.195 5.195 6 C 0.010 3.990 7 C -0.062 4.062 8 N -0.299 5.299 9 C 0.292 3.708 10 O -0.381 6.381 11 C 0.273 3.727 12 O -0.414 6.414 13 N -0.317 5.317 14 C 0.160 3.840 15 H 0.076 0.924 16 C -0.204 4.204 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.197 1.197 24 H -0.210 1.210 25 C -0.022 4.022 26 C -0.259 4.259 27 C 0.317 3.683 28 O -0.441 6.441 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.186 0.814 37 H 0.260 0.740 38 H 0.237 0.763 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.156 0.844 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.050 19.485 6.614 24.366 hybrid contribution 0.664 -0.287 0.113 0.732 sum -12.386 19.198 6.728 23.817 Atomic orbital electron populations 1.22760 0.80295 1.03182 1.00074 1.87855 1.20382 1.27294 1.95517 1.22919 0.92915 0.85640 1.01892 1.22082 0.93618 1.01888 0.84975 1.45249 1.54509 1.05950 1.13834 1.21786 0.95702 0.83585 0.97960 1.16616 1.11827 0.84118 0.93604 1.42893 1.14743 1.03755 1.68532 1.20979 0.82657 0.90197 0.76942 1.90768 1.35438 1.64125 1.47790 1.19661 0.85472 0.86831 0.80691 1.90735 1.36088 1.62940 1.51609 1.46516 1.10228 1.11811 1.63149 1.18985 0.97794 0.72531 0.94676 0.92411 1.22061 0.96702 1.03830 0.97809 1.21189 0.92259 0.92456 1.51579 0.91742 1.24885 0.97902 0.96303 0.94509 1.69926 1.32314 1.01548 1.48220 0.86398 0.83951 0.78269 0.78323 1.20515 1.19696 1.20998 1.21525 0.89691 0.93542 0.97435 1.21953 1.10140 0.95139 0.98642 1.17172 0.79901 0.87219 0.84047 1.90948 1.56612 1.12944 1.83619 0.93898 0.93985 0.89207 0.91234 0.92138 0.87964 0.86390 0.81450 0.73960 0.76335 0.96209 0.95066 0.89521 0.92447 0.84431 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.00 10.14 -35.23 -0.36 -3.36 16 3 C 0.04 0.29 6.28 37.16 0.23 0.52 16 4 C 0.10 0.67 5.77 -4.04 -0.02 0.65 16 5 N -0.48 -4.73 2.57 -119.56 -0.31 -5.04 16 6 C 0.14 1.31 9.66 -16.56 -0.16 1.15 16 7 C 0.04 0.40 5.73 -83.96 -0.48 -0.08 16 8 N -0.65 -7.90 5.28 -10.46 -0.06 -7.95 16 9 C 0.51 8.03 7.68 -11.65 -0.09 7.94 16 10 O -0.51 -8.84 15.80 5.45 0.09 -8.75 16 11 C 0.50 9.38 7.85 -11.65 -0.09 9.29 16 12 O -0.54 -11.20 16.15 5.48 0.09 -11.11 16 13 N -0.67 -13.78 5.06 -55.41 -0.28 -14.07 16 14 C 0.26 6.38 2.46 -69.08 -0.17 6.20 16 15 H 0.06 1.60 7.58 -51.93 -0.39 1.20 16 16 C -0.15 -3.42 9.35 37.15 0.35 -3.08 16 17 C -0.54 -13.88 8.67 -34.44 -0.30 -14.18 16 18 H 0.06 1.62 7.72 -52.49 -0.41 1.21 16 19 C 0.07 1.78 5.32 -17.82 -0.09 1.68 16 20 N -0.88 -24.17 11.70 55.43 0.65 -23.52 16 21 Si 0.90 20.30 29.54 -169.99 -5.02 15.27 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.00 0.01 8.96 -39.35 -0.35 -0.34 16 26 C -0.24 -2.71 9.98 -39.41 -0.39 -3.10 16 27 C 0.51 6.36 7.40 -15.46 -0.11 6.25 16 28 O -0.56 -8.34 16.63 4.84 0.08 -8.26 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.50 8.02 -51.93 -0.42 0.09 16 35 H 0.12 0.83 7.38 -51.93 -0.38 0.45 16 36 H 0.17 1.20 8.04 -52.48 -0.42 0.78 16 37 H 0.42 4.53 8.31 -40.82 -0.34 4.20 16 38 H 0.40 7.75 7.99 -40.82 -0.33 7.43 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 2.21 6.44 -51.93 -0.33 1.88 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 43 H 0.14 1.53 8.05 -52.48 -0.42 1.11 16 44 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -32.55 383.19 -5.88 -38.43 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.96 Total: 8.38 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -0.58 Total: 14.20 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.01 Total: -50.58 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.10 Total: -31.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.55 -5.88 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116728883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.983 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds