Wall clock time and date at job start Tue Mar 31 2020 21:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99665 * 2 1 4 4 C 1.52999 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46920 * 64.99972 * 4 3 2 6 6 C 1.35890 * 119.60720 * 270.25409 * 5 4 3 7 7 C 1.35982 * 120.59087 * 180.21899 * 6 5 4 8 8 N 1.40101 * 120.09181 * 179.78787 * 7 6 5 9 9 C 1.34779 * 119.99647 * 235.28795 * 8 7 6 10 10 O 1.21403 * 120.00058 * 5.30620 * 9 8 7 11 11 C 1.49319 * 120.00100 * 185.31023 * 9 8 7 12 12 O 1.21367 * 119.99747 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00100 * 179.97438 * 11 9 8 14 14 C 1.46501 * 119.99544 * 179.97438 * 13 11 9 15 15 H 1.08996 * 109.47338 * 324.99748 * 14 13 11 16 16 C 1.52993 * 109.47461 * 85.00117 * 14 13 11 17 17 C 1.50706 * 109.46528 * 205.00019 * 14 13 11 18 18 H 1.08000 * 120.00295 * 354.39250 * 17 14 13 19 19 C 1.37879 * 119.99628 * 174.39447 * 17 14 13 20 20 N 1.31512 * 120.00152 * 0.62502 * 19 17 14 21 21 Si 1.86807 * 119.99758 * 180.90139 * 19 17 14 22 22 H 1.48500 * 109.46808 * 264.72859 * 21 19 17 23 23 H 1.48498 * 109.46940 * 24.72519 * 21 19 17 24 24 H 1.48496 * 109.46871 * 144.73048 * 21 19 17 25 25 C 1.40691 * 119.80754 * 359.50637 * 7 6 5 26 26 C 1.36321 * 119.23475 * 0.25781 * 25 7 6 27 27 C 1.34635 * 119.59750 * 90.00293 * 5 4 3 28 28 O 1.22086 * 119.91801 * 0.02562 * 27 5 4 29 29 H 1.08996 * 109.47116 * 299.99884 * 1 2 3 30 30 H 1.08997 * 109.47227 * 60.00346 * 1 2 3 31 31 H 1.09009 * 109.46591 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47028 * 59.99741 * 3 2 1 33 33 H 1.09004 * 109.47507 * 300.00100 * 3 2 1 34 34 H 1.08997 * 109.47134 * 305.00186 * 4 3 2 35 35 H 1.08998 * 109.46740 * 185.00146 * 4 3 2 36 36 H 1.08003 * 119.70193 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00706 * 55.29423 * 8 7 6 38 38 H 0.96996 * 119.99824 * 359.97438 * 13 11 9 39 39 H 1.08997 * 109.46965 * 296.81874 * 16 14 13 40 40 H 1.09002 * 109.47107 * 56.81152 * 16 14 13 41 41 H 1.08995 * 109.47400 * 176.81356 * 16 14 13 42 42 H 0.97000 * 119.99768 * 180.27245 * 20 19 17 43 43 H 1.08003 * 120.37995 * 180.27364 * 25 7 6 44 44 H 1.07998 * 120.29371 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0892 -0.7880 -1.3265 7 6 4.5012 -1.3848 -2.4768 8 7 4.6177 -2.7795 -2.5419 9 6 5.7858 -3.3415 -2.9112 10 8 6.7634 -2.6453 -3.0941 11 6 5.8774 -4.8205 -3.0955 12 8 4.9001 -5.5164 -2.9123 13 7 7.0452 -5.3824 -3.4653 14 6 7.1351 -6.8335 -3.6456 15 1 6.4951 -7.3306 -2.9167 16 6 6.6793 -7.2011 -5.0590 17 6 8.5616 -7.2769 -3.4466 18 1 9.3399 -6.5427 -3.2994 19 6 8.8732 -8.6200 -3.4523 20 7 7.9275 -9.5137 -3.6438 21 14 10.6375 -9.1707 -3.1805 22 1 11.2985 -9.3801 -4.4937 23 1 11.3697 -8.1275 -2.4185 24 1 10.6464 -10.4422 -2.4135 25 6 4.8042 -0.5982 -3.6032 26 6 4.6842 0.7572 -3.5205 27 6 4.2609 1.3400 -2.3139 28 8 4.1503 2.5529 -2.2294 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1767 0.0902 36 1 3.8531 -1.3937 -0.4641 37 1 3.8579 -3.3406 -2.3212 38 1 7.8261 -4.8261 -3.6121 39 1 5.6306 -6.9315 -5.1842 40 1 7.2830 -6.6601 -5.7877 41 1 6.7995 -8.2735 -5.2122 42 1 8.1461 -10.4587 -3.6439 43 1 5.1280 -1.0628 -4.5229 44 1 4.9120 1.3774 -4.3748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116728883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:42 Heat of formation + Delta-G solvation = -131.448893 kcal Electronic energy + Delta-G solvation = -28626.147807 eV Core-core repulsion = 24350.849448 eV Total energy + Delta-G solvation = -4275.298359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.65402 -41.60929 -39.76674 -38.89158 -38.15478 -36.98310 -36.37466 -34.74489 -34.23792 -31.34321 -31.12432 -30.02977 -27.38635 -27.33041 -26.23963 -25.45619 -24.42379 -23.30611 -22.25869 -21.24582 -20.28183 -19.07652 -18.64486 -18.06523 -17.95290 -17.45124 -17.34860 -17.26496 -16.99599 -16.73930 -16.58360 -16.05821 -15.86422 -15.50348 -15.19132 -14.99861 -14.92817 -14.40878 -14.25625 -13.74286 -13.68092 -13.62850 -13.51541 -13.01928 -12.97207 -12.92090 -12.82729 -12.72681 -12.64394 -12.33690 -12.18674 -12.12073 -11.36468 -11.15662 -11.12219 -10.77913 -10.71678 -10.65439 -10.58222 -9.93276 -8.89685 -8.19723 -6.35462 -0.24660 0.25041 0.70389 1.21547 1.46402 1.47667 1.58112 1.71154 2.19815 2.41137 2.48914 2.76158 2.81509 3.12799 3.50879 3.60343 3.67964 3.82243 3.88938 4.07577 4.09564 4.35885 4.46005 4.48163 4.54688 4.62920 4.69562 4.72117 4.87901 4.90708 4.92996 5.00658 5.04092 5.21206 5.33554 5.42886 5.48996 5.61938 5.76088 5.89031 6.01515 6.02805 6.09474 6.58909 6.69017 6.82311 6.88135 7.12480 7.36978 8.87797 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.002196 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.521452 B =12748.299855 C =13283.550131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.047 3.953 4 C 0.089 3.911 5 N -0.479 5.479 6 C 0.165 3.835 7 C 0.011 3.989 8 N -0.624 5.624 9 C 0.523 3.477 10 O -0.524 6.524 11 C 0.496 3.504 12 O -0.556 6.556 13 N -0.672 5.672 14 C 0.268 3.732 15 H 0.019 0.981 16 C -0.134 4.134 17 C -0.550 4.550 18 H 0.070 0.930 19 C 0.020 3.980 20 N -0.914 5.914 21 Si 0.969 3.031 22 H -0.273 1.273 23 H -0.266 1.266 24 H -0.284 1.284 25 C 0.002 3.998 26 C -0.248 4.248 27 C 0.506 3.494 28 O -0.590 6.590 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.198 0.802 37 H 0.430 0.570 38 H 0.410 0.590 39 H 0.023 0.977 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.267 0.733 43 H 0.139 0.861 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 19.949 7.830 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C -0.030 4.030 4 C -0.031 4.031 5 N -0.188 5.188 6 C 0.034 3.966 7 C -0.085 4.085 8 N -0.276 5.276 9 C 0.305 3.695 10 O -0.399 6.399 11 C 0.276 3.724 12 O -0.435 6.435 13 N -0.322 5.322 14 C 0.166 3.834 15 H 0.037 0.963 16 C -0.193 4.193 17 C -0.588 4.588 18 H 0.088 0.912 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.794 3.206 22 H -0.199 1.199 23 H -0.190 1.190 24 H -0.210 1.210 25 C -0.021 4.021 26 C -0.270 4.270 27 C 0.310 3.690 28 O -0.477 6.477 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.215 0.785 37 H 0.271 0.729 38 H 0.245 0.755 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.156 0.844 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.016 20.336 7.894 25.403 hybrid contribution 0.512 -0.502 -0.208 0.746 sum -12.505 19.834 7.687 24.675 Atomic orbital electron populations 1.22882 0.79357 1.03837 1.00657 1.87810 1.21474 1.27721 1.95633 1.22904 0.92446 0.85471 1.02208 1.22387 0.94027 1.02368 0.84330 1.45364 1.53127 1.06017 1.14259 1.22118 0.92859 0.83488 0.98091 1.16668 1.14000 0.83297 0.94556 1.42616 1.13652 1.04422 1.66871 1.20165 0.83548 0.88204 0.77625 1.90775 1.36233 1.63757 1.49143 1.20142 0.84426 0.88428 0.79377 1.90722 1.36644 1.64096 1.52076 1.46270 1.11366 1.10473 1.64062 1.18602 0.96534 0.74441 0.93873 0.96303 1.21894 0.97164 1.02436 0.97758 1.21501 0.92996 0.92898 1.51424 0.91158 1.25711 1.01766 0.96436 0.94193 1.70048 1.34279 1.01823 1.49017 0.85376 0.79209 0.77707 0.78336 1.19894 1.19022 1.20967 1.21557 0.89329 0.93511 0.97665 1.22000 1.10867 0.95267 0.98896 1.17321 0.79884 0.86982 0.84815 1.90927 1.58256 1.14223 1.84280 0.92475 0.94275 0.88577 0.88718 0.94037 0.85110 0.86490 0.78507 0.72924 0.75459 0.95764 0.93868 0.91759 0.92375 0.84361 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -5.24 10.14 -148.98 -1.51 -6.75 16 3 C 0.05 0.52 6.28 71.98 0.45 0.97 16 4 C 0.09 1.04 5.77 86.38 0.50 1.54 16 5 N -0.48 -8.42 2.57 -650.31 -1.67 -10.09 16 6 C 0.16 2.65 9.66 83.54 0.81 3.46 16 7 C 0.01 0.23 5.73 37.89 0.22 0.45 16 8 N -0.62 -14.05 5.28 -305.35 -1.61 -15.66 16 9 C 0.52 15.77 7.68 87.23 0.67 16.44 16 10 O -0.52 -17.53 15.80 -3.41 -0.05 -17.58 16 11 C 0.50 18.57 7.85 87.23 0.68 19.25 16 12 O -0.56 -23.15 16.15 -3.30 -0.05 -23.21 16 13 N -0.67 -27.62 5.06 -447.56 -2.27 -29.89 16 14 C 0.27 13.25 2.46 44.24 0.11 13.36 16 15 H 0.02 1.08 7.58 -2.39 -0.02 1.07 16 16 C -0.13 -6.36 9.35 71.98 0.67 -5.69 16 17 C -0.55 -28.44 8.67 25.60 0.22 -28.22 16 18 H 0.07 3.47 7.72 -2.91 -0.02 3.45 16 19 C 0.02 1.03 5.32 84.66 0.45 1.48 16 20 N -0.91 -50.62 11.70 21.45 0.25 -50.37 16 21 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.00 0.05 8.96 22.42 0.20 0.25 16 26 C -0.25 -5.54 9.98 22.38 0.22 -5.32 16 27 C 0.51 12.12 7.40 84.82 0.63 12.75 16 28 O -0.59 -17.57 16.63 -5.60 -0.09 -17.66 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 0.59 8.14 -2.38 -0.02 0.58 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.13 0.80 8.02 -2.39 -0.02 0.78 16 35 H 0.12 1.45 7.38 -2.39 -0.02 1.43 16 36 H 0.20 2.02 8.04 -2.91 -0.02 2.00 16 37 H 0.43 8.36 8.31 -92.71 -0.77 7.59 16 38 H 0.41 15.58 7.99 -92.71 -0.74 14.84 16 39 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 3.34 6.44 -2.39 -0.02 3.33 16 42 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 43 H 0.14 2.96 8.05 -2.91 -0.02 2.93 16 44 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -70.13 383.19 1.64 -68.49 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.46 Total: 27.18 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 7.08 Total: 32.23 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.30 Total: -106.01 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -1.71 Total: -65.20 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.13 1.64 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116728883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.956 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds