Wall clock time and date at job start Tue Mar 31 2020 21:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99918 * 2 1 4 4 C 1.53000 * 109.47119 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47244 * 64.99931 * 4 3 2 6 6 C 1.35895 * 119.60482 * 270.29854 * 5 4 3 7 7 C 1.35991 * 120.58711 * 180.26114 * 6 5 4 8 8 N 1.40096 * 120.09386 * 179.71876 * 7 6 5 9 9 C 1.34777 * 120.00049 * 237.42683 * 8 7 6 10 10 O 1.21401 * 119.99896 * 355.17223 * 9 8 7 11 11 C 1.49313 * 120.00085 * 175.16857 * 9 8 7 12 12 O 1.21368 * 120.00077 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00085 * 179.97438 * 11 9 8 14 14 C 1.46499 * 120.00247 * 180.02562 * 13 11 9 15 15 H 1.08994 * 109.47438 * 34.99579 * 14 13 11 16 16 C 1.53007 * 109.46713 * 275.00071 * 14 13 11 17 17 C 1.50694 * 109.47370 * 155.00177 * 14 13 11 18 18 H 1.08001 * 120.00236 * 359.97438 * 17 14 13 19 19 C 1.37877 * 120.00144 * 179.97438 * 17 14 13 20 20 N 1.31508 * 120.00209 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99860 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47111 * 269.99781 * 21 19 17 23 23 H 1.48500 * 109.47169 * 30.00213 * 21 19 17 24 24 H 1.48504 * 109.47349 * 150.00076 * 21 19 17 25 25 C 1.40689 * 119.80891 * 359.44142 * 7 6 5 26 26 C 1.36321 * 119.23591 * 0.27826 * 25 7 6 27 27 C 1.34632 * 119.60303 * 90.00208 * 5 4 3 28 28 O 1.22095 * 119.91246 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.46498 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46432 * 299.99497 * 1 2 3 31 31 H 1.08992 * 109.46973 * 60.00039 * 1 2 3 32 32 H 1.09001 * 109.47139 * 60.00510 * 3 2 1 33 33 H 1.09000 * 109.47459 * 299.99823 * 3 2 1 34 34 H 1.09001 * 109.47512 * 305.00481 * 4 3 2 35 35 H 1.09002 * 109.47398 * 185.00100 * 4 3 2 36 36 H 1.07993 * 119.70436 * 359.97438 * 6 5 4 37 37 H 0.97008 * 120.00343 * 57.42398 * 8 7 6 38 38 H 0.97003 * 120.00004 * 0.02562 * 13 11 9 39 39 H 1.09000 * 109.47085 * 180.02562 * 16 14 13 40 40 H 1.09002 * 109.47090 * 299.99932 * 16 14 13 41 41 H 1.08996 * 109.47018 * 59.99795 * 16 14 13 42 42 H 0.97005 * 120.00370 * 179.97438 * 20 19 17 43 43 H 1.08007 * 120.38299 * 180.30156 * 25 7 6 44 44 H 1.08000 * 120.30342 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0873 -0.7878 -1.3292 7 6 4.4991 -1.3842 -2.4798 8 7 4.6161 -2.7787 -2.5454 9 6 5.7962 -3.3413 -2.8733 10 8 6.7334 -2.6409 -3.1970 11 6 5.9507 -4.8260 -2.8383 12 8 5.0136 -5.5263 -2.5150 13 7 7.1306 -5.3887 -3.1667 14 6 7.2821 -6.8454 -3.1329 15 1 6.3476 -7.3152 -3.4395 16 6 7.6333 -7.2887 -1.7112 17 6 8.3842 -7.2578 -4.0743 18 1 8.9181 -6.5097 -4.6415 19 6 8.7110 -8.5902 -4.2116 20 7 9.6724 -8.9502 -5.0336 21 14 7.7880 -9.8842 -3.2302 22 1 8.4759 -10.1054 -1.9328 23 1 6.3996 -9.4199 -2.9815 24 1 7.7549 -11.1561 -3.9959 25 6 4.8018 -0.5972 -3.6060 26 6 4.6819 0.7582 -3.5227 27 6 4.2592 1.3405 -2.3157 28 8 4.1486 2.5535 -2.2307 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0889 36 1 3.8511 -1.3938 -0.4671 37 1 3.8479 -3.3395 -2.3547 38 1 7.8795 -4.8290 -3.4254 39 1 7.7465 -8.3725 -1.6861 40 1 8.5679 -6.8190 -1.4045 41 1 6.8362 -6.9904 -1.0303 42 1 9.9025 -9.8876 -5.1299 43 1 5.1251 -1.0614 -4.5260 44 1 4.9094 1.3789 -4.3768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116728884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:49 Heat of formation + Delta-G solvation = -97.363107 kcal Electronic energy + Delta-G solvation = -28714.458496 eV Core-core repulsion = 24440.638208 eV Total energy + Delta-G solvation = -4273.820288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78782 -40.40915 -38.55470 -38.31652 -37.13876 -35.73194 -35.20691 -33.75131 -32.44488 -30.70921 -30.12610 -29.15630 -26.92956 -25.43111 -25.02027 -24.69242 -23.56092 -22.30544 -20.91553 -19.86883 -19.02195 -18.12811 -17.73022 -17.01623 -16.79341 -16.73742 -16.62954 -16.25705 -15.82103 -15.52055 -15.35633 -15.28071 -14.86184 -14.42274 -14.34096 -13.72698 -13.42654 -13.31695 -13.08142 -13.02044 -12.96977 -12.67426 -12.43207 -12.29673 -11.99957 -11.95025 -11.69323 -11.48181 -11.36155 -10.87989 -10.51472 -10.33909 -10.27057 -10.15165 -9.77646 -9.74088 -9.34274 -9.28024 -8.85310 -8.40706 -8.03295 -6.26158 -4.30321 0.56685 1.37715 1.73506 2.13556 2.71067 3.13361 3.18439 3.30920 3.32959 3.39288 3.52789 3.93672 4.25180 4.25359 4.32116 4.43092 4.63363 4.69336 4.72290 4.85129 4.86852 4.89451 4.97059 5.06592 5.07444 5.17233 5.22895 5.51056 5.74105 5.83340 6.07837 6.19065 6.23637 6.38421 6.42043 6.51816 6.68460 6.74266 6.87607 7.06593 7.09198 7.36152 7.70041 7.76004 8.02188 8.35475 8.48471 8.74165 9.32091 10.85767 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.002308 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.739160 B =12126.855442 C =13038.010167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.044 3.956 4 C 0.096 3.904 5 N -0.485 5.485 6 C 0.142 3.858 7 C 0.032 3.968 8 N -0.647 5.647 9 C 0.511 3.489 10 O -0.505 6.505 11 C 0.498 3.502 12 O -0.537 6.537 13 N -0.661 5.661 14 C 0.235 3.765 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.539 4.539 18 H 0.083 0.917 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.261 1.261 24 H -0.293 1.293 25 C 0.003 3.997 26 C -0.238 4.238 27 C 0.514 3.486 28 O -0.557 6.557 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.422 0.578 38 H 0.409 0.591 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.269 0.731 43 H 0.140 0.860 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 18.599 11.051 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.034 4.034 4 C -0.026 4.026 5 N -0.196 5.196 6 C 0.012 3.988 7 C -0.065 4.065 8 N -0.299 5.299 9 C 0.294 3.706 10 O -0.377 6.377 11 C 0.277 3.723 12 O -0.415 6.415 13 N -0.310 5.310 14 C 0.132 3.868 15 H 0.072 0.928 16 C -0.221 4.221 17 C -0.577 4.577 18 H 0.101 0.899 19 C -0.124 4.124 20 N -0.525 5.525 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.186 1.186 24 H -0.220 1.220 25 C -0.020 4.020 26 C -0.260 4.260 27 C 0.317 3.683 28 O -0.440 6.440 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.185 0.815 37 H 0.260 0.740 38 H 0.245 0.755 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.158 0.842 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.559 19.023 11.044 27.532 hybrid contribution -0.575 -0.715 0.422 1.010 sum -17.134 18.308 11.467 27.572 Atomic orbital electron populations 1.22758 0.80288 1.03163 1.00099 1.87850 1.20388 1.27314 1.95523 1.22920 0.92900 0.85633 1.01923 1.22086 0.93644 1.01917 0.84926 1.45267 1.54551 1.05932 1.13841 1.21808 0.95350 0.83619 0.97989 1.16599 1.12243 0.84013 0.93663 1.42831 1.13242 1.03852 1.69972 1.20800 0.82531 0.89995 0.77322 1.90786 1.38960 1.63954 1.44020 1.19705 0.84884 0.87196 0.80562 1.90730 1.39419 1.63102 1.48280 1.46141 1.11799 1.10363 1.62723 1.19307 0.98966 0.74914 0.93585 0.92802 1.22473 1.00585 1.00544 0.98523 1.20997 1.17867 0.94215 1.24654 0.89859 1.24823 0.94539 0.98203 0.94871 1.69859 1.29007 1.17603 1.35982 0.86880 0.81319 0.80841 0.79476 1.20197 1.18607 1.22034 1.21561 0.89366 0.93480 0.97565 1.21968 1.10186 0.95210 0.98618 1.17193 0.79859 0.87224 0.84045 1.90954 1.56510 1.12944 1.83605 0.89230 0.93886 0.93969 0.91206 0.92122 0.87973 0.86361 0.81457 0.73975 0.75541 0.93043 0.92453 0.94353 0.92137 0.84246 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.85 10.14 -35.23 -0.36 -3.21 16 3 C 0.04 0.27 6.28 37.16 0.23 0.51 16 4 C 0.10 0.64 5.77 -4.04 -0.02 0.62 16 5 N -0.48 -4.54 2.57 -119.55 -0.31 -4.85 16 6 C 0.14 1.26 9.66 -16.56 -0.16 1.10 16 7 C 0.03 0.34 5.76 -83.96 -0.48 -0.14 16 8 N -0.65 -7.39 5.27 -10.47 -0.06 -7.45 16 9 C 0.51 7.62 7.74 -11.65 -0.09 7.53 16 10 O -0.50 -8.45 15.58 5.45 0.08 -8.36 16 11 C 0.50 8.83 7.85 -11.65 -0.09 8.74 16 12 O -0.54 -10.37 16.14 5.48 0.09 -10.28 16 13 N -0.66 -12.96 5.06 -55.41 -0.28 -13.24 16 14 C 0.23 5.36 2.15 -69.08 -0.15 5.21 16 15 H 0.05 1.32 6.64 -51.93 -0.34 0.97 16 16 C -0.16 -3.45 8.96 37.16 0.33 -3.12 16 17 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 18 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 19 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 20 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 21 Si 0.89 20.89 24.37 -169.99 -4.14 16.74 16 22 H -0.28 -6.28 6.87 56.52 0.39 -5.89 16 23 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.00 0.03 8.91 -39.35 -0.35 -0.32 16 26 C -0.24 -2.66 9.98 -39.41 -0.39 -3.05 16 27 C 0.51 6.20 7.40 -15.46 -0.11 6.09 16 28 O -0.56 -8.19 16.63 4.83 0.08 -8.11 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.46 8.02 -51.93 -0.42 0.05 16 35 H 0.12 0.80 7.38 -51.93 -0.38 0.41 16 36 H 0.17 1.11 8.04 -52.49 -0.42 0.69 16 37 H 0.42 4.16 8.30 -40.82 -0.34 3.82 16 38 H 0.41 7.65 8.01 -40.82 -0.33 7.32 16 39 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.14 1.52 7.93 -52.48 -0.42 1.11 16 44 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -33.53 375.39 -4.85 -38.38 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.80 Total: 7.75 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.59 Total: 11.98 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.13 Total: -50.56 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.10 Total: -29.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.14 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.53 -4.85 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116728884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.985 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds