Wall clock time and date at job start Tue Mar 31 2020 20:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58639 * 2 1 4 4 C 1.53200 * 109.58665 * 120.27831 * 2 1 3 5 5 C 1.53037 * 109.31229 * 174.42017 * 4 2 1 6 6 C 1.53038 * 109.54248 * 298.63437 * 5 4 2 7 7 H 1.08993 * 109.49667 * 301.38546 * 6 5 4 8 8 N 1.46498 * 109.49767 * 181.31489 * 6 5 4 9 9 C 1.34773 * 119.99920 * 154.72706 * 8 6 5 10 10 O 1.21357 * 119.99797 * 0.27624 * 9 8 6 11 11 C 1.49443 * 120.00439 * 180.27665 * 9 8 6 12 12 O 1.21357 * 119.99764 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00439 * 180.02562 * 11 9 8 14 14 C 1.46498 * 120.00198 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47567 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.47169 * 59.99517 * 15 14 13 17 17 F 1.39897 * 109.47734 * 180.02562 * 15 14 13 18 18 F 1.39909 * 109.47111 * 300.00075 * 15 14 13 19 19 C 1.53199 * 109.30765 * 61.36771 * 6 5 4 20 20 N 1.46921 * 108.77474 * 305.36350 * 19 6 5 21 21 C 1.36940 * 120.62868 * 233.58820 * 20 19 6 22 22 H 1.08002 * 119.99798 * 150.18770 * 21 20 19 23 23 C 1.38807 * 120.00256 * 330.18381 * 21 20 19 24 24 N 1.31621 * 119.99918 * 344.49196 * 23 21 20 25 25 Si 1.86800 * 120.00382 * 164.48489 * 23 21 20 26 26 H 1.48501 * 109.47110 * 90.00068 * 25 23 21 27 27 H 1.48497 * 109.47395 * 210.00426 * 25 23 21 28 28 H 1.48504 * 109.46969 * 330.00251 * 25 23 21 29 29 H 1.08997 * 109.47496 * 299.72260 * 1 2 3 30 30 H 1.09005 * 109.46601 * 59.72240 * 1 2 3 31 31 H 1.09000 * 109.47282 * 179.71686 * 1 2 3 32 32 H 1.09004 * 109.48961 * 54.47303 * 4 2 1 33 33 H 1.08992 * 109.49592 * 294.37833 * 4 2 1 34 34 H 1.09005 * 109.45340 * 178.61178 * 5 4 2 35 35 H 1.09003 * 109.44620 * 58.65517 * 5 4 2 36 36 H 0.97005 * 119.99912 * 335.00669 * 8 6 5 37 37 H 0.96993 * 119.99954 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.47286 * 300.00028 * 14 13 11 39 39 H 1.09000 * 109.47361 * 59.99719 * 14 13 11 40 40 H 1.08997 * 109.58831 * 65.15423 * 19 6 5 41 41 H 1.09002 * 109.58524 * 185.57941 * 19 6 5 42 42 H 0.96999 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 1.2465 5 6 3.5675 -0.8465 1.1713 6 6 3.9569 -1.6659 -0.0612 7 1 3.4988 -2.6530 -0.0013 8 7 5.4143 -1.8055 -0.1150 9 6 5.9676 -2.8521 -0.7589 10 8 5.2587 -3.6762 -1.2985 11 6 7.4541 -2.9980 -0.8086 12 8 8.1630 -2.1737 -0.2694 13 7 8.0074 -4.0444 -1.4530 14 6 9.4646 -4.1876 -1.5012 15 6 9.8274 -5.4489 -2.2876 16 9 9.3255 -5.3473 -3.5895 17 9 11.2189 -5.5861 -2.3331 18 9 9.2694 -6.5672 -1.6587 19 6 3.4651 -0.9487 -1.3224 20 7 2.0226 -0.7011 -1.1935 21 6 1.1539 -1.1156 -2.1675 22 1 0.1397 -1.3821 -1.9087 23 6 1.5765 -1.1930 -3.4874 24 7 2.6874 -0.5927 -3.8590 25 14 0.5690 -2.1493 -4.7363 26 1 -0.4247 -1.2444 -5.3679 27 1 1.4692 -2.7017 -5.7801 28 1 -0.1387 -3.2622 -4.0536 29 1 -0.3634 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6029 -1.7236 1.2936 33 1 1.7660 -0.1640 2.1370 34 1 3.9377 -1.3421 2.0688 35 1 4.0059 0.1489 1.0991 36 1 5.9809 -1.1468 0.3164 37 1 7.4409 -4.7030 -1.8843 38 1 9.8993 -3.3166 -1.9916 39 1 9.8557 -4.2664 -0.4868 40 1 3.9904 0.0001 -1.4316 41 1 3.6518 -1.5746 -2.1950 42 1 2.9826 -0.6465 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132402879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:48 Heat of formation + Delta-G solvation = -203.128421 kcal Electronic energy + Delta-G solvation = -30007.815550 eV Core-core repulsion = 25187.552193 eV Total energy + Delta-G solvation = -4820.263357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.55558 -48.07734 -48.01464 -40.65144 -38.83864 -37.56863 -35.72049 -34.45736 -32.85729 -30.82205 -30.04589 -29.87639 -26.45941 -25.31360 -24.46526 -23.08356 -22.28106 -20.94493 -20.29204 -19.58978 -19.02172 -18.85620 -18.77479 -17.33768 -16.86353 -16.43328 -16.01768 -15.53027 -15.41029 -14.99652 -14.88503 -14.71416 -14.44887 -14.26976 -14.16743 -14.14510 -13.99570 -13.84314 -13.68216 -13.40666 -13.18451 -12.77019 -12.47192 -12.38235 -11.94448 -11.70871 -11.49953 -11.16283 -10.94473 -10.72360 -10.58622 -10.43761 -10.29824 -10.00838 -9.82332 -9.81727 -9.53307 -9.45574 -8.74898 -8.46017 -6.64692 -5.77883 -3.22623 1.42337 1.90966 2.33308 3.22573 3.26657 3.39333 3.44700 3.47575 3.49533 3.56468 3.85749 4.45943 4.54527 4.65062 4.79662 5.26990 5.32173 5.41772 5.52213 5.59415 5.62648 5.89874 6.05652 6.21273 6.23383 6.35024 6.38210 6.42257 6.56807 6.62219 6.65856 6.76151 7.00763 7.09281 7.20866 7.40097 7.64317 7.71000 7.83810 8.19434 8.46537 9.20631 9.84811 10.40293 11.30536 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.003069 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.985168 B = 9121.283068 C =10627.759051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.113 3.887 7 H 0.087 0.913 8 N -0.684 5.684 9 C 0.505 3.495 10 O -0.509 6.509 11 C 0.521 3.479 12 O -0.515 6.515 13 N -0.707 5.707 14 C 0.077 3.923 15 C 0.449 3.551 16 F -0.174 7.174 17 F -0.173 7.173 18 F -0.176 7.176 19 C 0.168 3.832 20 N -0.582 5.582 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.007 3.993 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.405 0.595 37 H 0.422 0.578 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.021 0.979 41 H 0.094 0.906 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -5.863 8.409 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.057 3.943 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.009 3.991 7 H 0.106 0.894 8 N -0.335 5.335 9 C 0.284 3.716 10 O -0.384 6.384 11 C 0.302 3.698 12 O -0.389 6.389 13 N -0.364 5.364 14 C -0.049 4.049 15 C 0.394 3.606 16 F -0.155 7.155 17 F -0.154 7.154 18 F -0.158 7.158 19 C 0.041 3.959 20 N -0.305 5.305 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.192 4.192 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.241 0.759 37 H 0.260 0.740 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.039 0.961 41 H 0.112 0.888 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.134 -5.869 8.213 16.565 hybrid contribution -0.142 -0.686 -0.924 1.160 sum 12.992 -6.555 7.289 16.275 Atomic orbital electron populations 1.21800 0.95912 1.01459 1.00221 1.20511 0.93162 0.93610 0.86979 0.95623 1.22051 0.94028 1.01428 0.99042 1.21693 0.97599 0.99807 0.96430 1.22245 0.76364 1.01464 0.99076 0.89447 1.45907 1.09282 1.25130 1.53210 1.19616 0.87319 0.83470 0.81205 1.90834 1.62337 1.41706 1.43498 1.20498 0.89968 0.80911 0.78374 1.90765 1.63388 1.40820 1.43922 1.45386 1.05781 1.28514 1.56741 1.22531 0.83844 0.95243 1.03238 1.20474 0.75137 0.86073 0.78888 1.93266 1.87070 1.96218 1.38983 1.93228 1.29508 1.96296 1.96411 1.93249 1.85035 1.55578 1.81913 1.21079 0.83892 0.97086 0.93877 1.44002 1.02472 1.64596 1.19460 1.19125 0.95060 1.38228 0.85960 0.91174 1.25092 0.97781 0.99237 0.97062 1.70000 1.24072 1.43595 1.16743 0.86335 0.79364 0.80034 0.81264 1.21434 1.21576 1.20373 0.94304 0.91989 0.92751 0.91974 0.92470 0.92808 0.91952 0.75949 0.74029 0.86190 0.86277 0.96133 0.88813 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 2 C 0.16 3.24 3.50 -67.60 -0.24 3.01 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.80 5.35 -26.69 -0.14 -1.95 16 6 C 0.11 2.09 2.61 -67.81 -0.18 1.91 16 7 H 0.09 1.79 7.57 -51.93 -0.39 1.40 16 8 N -0.68 -10.93 5.07 -54.12 -0.27 -11.20 16 9 C 0.51 8.35 7.86 -11.59 -0.09 8.25 16 10 O -0.51 -9.98 16.14 5.49 0.09 -9.89 16 11 C 0.52 7.12 7.89 -11.59 -0.09 7.03 16 12 O -0.51 -7.46 16.48 5.49 0.09 -7.37 16 13 N -0.71 -7.74 5.41 -60.73 -0.33 -8.07 16 14 C 0.08 0.61 5.64 -4.04 -0.02 0.59 16 15 C 0.45 3.71 3.11 37.16 0.12 3.82 16 16 F -0.17 -1.72 17.18 2.25 0.04 -1.68 16 17 F -0.17 -1.41 17.32 2.25 0.04 -1.37 16 18 F -0.18 -1.62 17.18 2.25 0.04 -1.58 16 19 C 0.17 3.91 4.86 -3.71 -0.02 3.89 16 20 N -0.58 -14.03 2.99 -164.77 -0.49 -14.52 16 21 C -0.25 -6.78 8.58 -15.06 -0.13 -6.91 16 22 H 0.07 1.82 6.23 -52.49 -0.33 1.49 16 23 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 24 N -0.90 -26.09 11.23 55.49 0.62 -25.47 16 25 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 31 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.41 5.58 8.08 -40.82 -0.33 5.25 16 37 H 0.42 4.64 7.83 -40.82 -0.32 4.32 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 2.57 6.15 -51.93 -0.32 2.25 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -31.23 360.05 -5.92 -37.14 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.41 Total: 6.32 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -0.73 Total: 15.40 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.47 Total: -59.27 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.12 Total: -4.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.23 -5.92 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132402879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.984 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds