Wall clock time and date at job start Tue Mar 31 2020 20:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58639 * 2 1 4 4 C 1.53200 * 109.58665 * 120.27831 * 2 1 3 5 5 C 1.53037 * 109.31229 * 174.42017 * 4 2 1 6 6 C 1.53038 * 109.54248 * 298.63437 * 5 4 2 7 7 H 1.08993 * 109.49667 * 301.38546 * 6 5 4 8 8 N 1.46498 * 109.49767 * 181.31489 * 6 5 4 9 9 C 1.34773 * 119.99920 * 154.72706 * 8 6 5 10 10 O 1.21357 * 119.99797 * 0.27624 * 9 8 6 11 11 C 1.49443 * 120.00439 * 180.27665 * 9 8 6 12 12 O 1.21357 * 119.99764 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00439 * 180.02562 * 11 9 8 14 14 C 1.46498 * 120.00198 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47567 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.47169 * 59.99517 * 15 14 13 17 17 F 1.39897 * 109.47734 * 180.02562 * 15 14 13 18 18 F 1.39909 * 109.47111 * 300.00075 * 15 14 13 19 19 C 1.53199 * 109.30765 * 61.36771 * 6 5 4 20 20 N 1.46921 * 108.77474 * 305.36350 * 19 6 5 21 21 C 1.36940 * 120.62868 * 233.58820 * 20 19 6 22 22 H 1.08002 * 119.99798 * 150.18770 * 21 20 19 23 23 C 1.38807 * 120.00256 * 330.18381 * 21 20 19 24 24 N 1.31621 * 119.99918 * 344.49196 * 23 21 20 25 25 Si 1.86800 * 120.00382 * 164.48489 * 23 21 20 26 26 H 1.48501 * 109.47110 * 90.00068 * 25 23 21 27 27 H 1.48497 * 109.47395 * 210.00426 * 25 23 21 28 28 H 1.48504 * 109.46969 * 330.00251 * 25 23 21 29 29 H 1.08997 * 109.47496 * 299.72260 * 1 2 3 30 30 H 1.09005 * 109.46601 * 59.72240 * 1 2 3 31 31 H 1.09000 * 109.47282 * 179.71686 * 1 2 3 32 32 H 1.09004 * 109.48961 * 54.47303 * 4 2 1 33 33 H 1.08992 * 109.49592 * 294.37833 * 4 2 1 34 34 H 1.09005 * 109.45340 * 178.61178 * 5 4 2 35 35 H 1.09003 * 109.44620 * 58.65517 * 5 4 2 36 36 H 0.97005 * 119.99912 * 335.00669 * 8 6 5 37 37 H 0.96993 * 119.99954 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.47286 * 300.00028 * 14 13 11 39 39 H 1.09000 * 109.47361 * 59.99719 * 14 13 11 40 40 H 1.08997 * 109.58831 * 65.15423 * 19 6 5 41 41 H 1.09002 * 109.58524 * 185.57941 * 19 6 5 42 42 H 0.96999 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 1.2465 5 6 3.5675 -0.8465 1.1713 6 6 3.9569 -1.6659 -0.0612 7 1 3.4988 -2.6530 -0.0013 8 7 5.4143 -1.8055 -0.1150 9 6 5.9676 -2.8521 -0.7589 10 8 5.2587 -3.6762 -1.2985 11 6 7.4541 -2.9980 -0.8086 12 8 8.1630 -2.1737 -0.2694 13 7 8.0074 -4.0444 -1.4530 14 6 9.4646 -4.1876 -1.5012 15 6 9.8274 -5.4489 -2.2876 16 9 9.3255 -5.3473 -3.5895 17 9 11.2189 -5.5861 -2.3331 18 9 9.2694 -6.5672 -1.6587 19 6 3.4651 -0.9487 -1.3224 20 7 2.0226 -0.7011 -1.1935 21 6 1.1539 -1.1156 -2.1675 22 1 0.1397 -1.3821 -1.9087 23 6 1.5765 -1.1930 -3.4874 24 7 2.6874 -0.5927 -3.8590 25 14 0.5690 -2.1493 -4.7363 26 1 -0.4247 -1.2444 -5.3679 27 1 1.4692 -2.7017 -5.7801 28 1 -0.1387 -3.2622 -4.0536 29 1 -0.3634 0.5095 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6029 -1.7236 1.2936 33 1 1.7660 -0.1640 2.1370 34 1 3.9377 -1.3421 2.0688 35 1 4.0059 0.1489 1.0991 36 1 5.9809 -1.1468 0.3164 37 1 7.4409 -4.7030 -1.8843 38 1 9.8993 -3.3166 -1.9916 39 1 9.8557 -4.2664 -0.4868 40 1 3.9904 0.0001 -1.4316 41 1 3.6518 -1.5746 -2.1950 42 1 2.9826 -0.6465 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132402879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:46 Heat of formation + Delta-G solvation = -226.020870 kcal Electronic energy + Delta-G solvation = -30008.808241 eV Core-core repulsion = 25187.552193 eV Total energy + Delta-G solvation = -4821.256048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.26093 -48.76676 -48.74674 -41.86654 -40.16874 -39.07578 -36.77888 -35.87703 -34.64841 -32.29662 -31.73984 -30.85023 -27.95764 -27.06881 -25.64188 -24.16746 -23.77015 -22.25928 -21.62512 -21.10242 -20.00202 -19.72727 -19.57525 -18.38882 -18.25893 -17.93004 -17.26060 -17.04991 -16.62941 -16.16855 -15.88302 -15.70265 -15.56484 -15.35835 -15.32045 -15.15709 -15.02438 -14.94241 -14.87486 -14.84740 -14.49065 -14.16534 -14.06046 -13.51255 -13.11179 -13.07860 -12.94050 -12.77334 -12.68847 -12.54368 -12.27764 -12.13107 -11.97528 -11.64284 -11.41459 -11.15559 -10.81113 -10.72461 -10.53231 -10.25251 -8.61109 -7.84918 -5.31006 0.22408 0.94787 1.43301 1.46855 1.54464 1.55425 2.03917 2.33310 2.52399 2.54800 2.88147 3.09420 3.28182 3.34605 3.71449 3.92440 4.03953 4.09427 4.17085 4.24301 4.38027 4.58381 4.67191 4.71994 4.79680 4.89062 5.02256 5.08829 5.16026 5.24147 5.31114 5.32530 5.56115 5.61169 5.63141 5.72568 5.76993 6.18327 6.43354 6.53884 6.91653 7.17453 7.90214 8.40016 9.20715 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.003069 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.985168 B = 9121.283068 C =10627.759051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.066 0.934 8 N -0.676 5.676 9 C 0.500 3.500 10 O -0.546 6.546 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.699 5.699 14 C 0.077 3.923 15 C 0.456 3.544 16 F -0.185 7.185 17 F -0.169 7.169 18 F -0.181 7.181 19 C 0.178 3.822 20 N -0.601 5.601 21 C -0.251 4.251 22 H 0.075 0.925 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.955 3.045 26 H -0.282 1.282 27 H -0.299 1.299 28 H -0.271 1.271 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.421 0.579 38 H 0.135 0.865 39 H 0.143 0.857 40 H -0.001 1.001 41 H 0.046 0.954 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.593 -5.942 10.765 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.085 0.915 8 N -0.328 5.328 9 C 0.280 3.720 10 O -0.423 6.423 11 C 0.312 3.688 12 O -0.396 6.396 13 N -0.355 5.355 14 C -0.047 4.047 15 C 0.401 3.599 16 F -0.166 7.166 17 F -0.151 7.151 18 F -0.163 7.163 19 C 0.051 3.949 20 N -0.326 5.326 21 C -0.381 4.381 22 H 0.093 0.907 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.784 3.216 26 H -0.208 1.208 27 H -0.226 1.226 28 H -0.196 1.196 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.259 0.741 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.017 0.983 41 H 0.064 0.936 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.646 -5.947 10.608 18.279 hybrid contribution -0.275 -0.653 -1.633 1.780 sum 13.371 -6.600 8.975 17.404 Atomic orbital electron populations 1.21734 0.94740 1.01224 1.01006 1.20827 0.94327 0.93390 0.86799 0.96141 1.21949 0.94250 1.01123 0.98285 1.21681 0.97302 1.00023 0.95768 1.21781 0.77577 1.00147 0.98243 0.91541 1.45760 1.08524 1.25485 1.53068 1.20212 0.88826 0.82875 0.80111 1.90815 1.63661 1.43008 1.44840 1.19777 0.88274 0.81665 0.79083 1.90768 1.62893 1.41261 1.44698 1.45353 1.07344 1.27358 1.55397 1.22787 0.81653 0.95547 1.04747 1.20447 0.75129 0.85971 0.78350 1.93250 1.87260 1.96253 1.39872 1.93238 1.29198 1.96270 1.96360 1.93242 1.85155 1.55965 1.81931 1.20767 0.83975 0.95468 0.94677 1.44295 1.02418 1.65493 1.20349 1.19462 0.95519 1.36555 0.86571 0.90734 1.25779 0.99029 1.00831 0.98920 1.70157 1.25841 1.45668 1.16366 0.85451 0.77989 0.79047 0.79093 1.20813 1.22608 1.19561 0.90341 0.94420 0.93383 0.92494 0.88558 0.89328 0.90904 0.74352 0.74075 0.84734 0.83975 0.98311 0.93553 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.95 71.98 0.57 -3.93 16 2 C 0.15 5.81 3.50 44.98 0.16 5.97 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -3.42 5.37 30.67 0.16 -3.25 16 5 C -0.11 -3.07 5.35 30.62 0.16 -2.90 16 6 C 0.13 4.69 2.61 45.07 0.12 4.81 16 7 H 0.07 2.74 7.57 -2.39 -0.02 2.73 16 8 N -0.68 -21.28 5.07 -443.50 -2.25 -23.53 16 9 C 0.50 16.56 7.86 87.27 0.69 17.24 16 10 O -0.55 -22.06 16.14 -3.27 -0.05 -22.11 16 11 C 0.53 13.99 7.89 87.27 0.69 14.68 16 12 O -0.52 -14.13 16.48 -3.27 -0.05 -14.19 16 13 N -0.70 -14.54 5.41 -464.42 -2.51 -17.05 16 14 C 0.08 1.06 5.64 86.38 0.49 1.55 16 15 C 0.46 6.87 3.11 71.98 0.22 7.09 16 16 F -0.18 -3.51 17.18 44.97 0.77 -2.74 16 17 F -0.17 -2.47 17.32 44.97 0.78 -1.69 16 18 F -0.18 -3.12 17.18 44.97 0.77 -2.34 16 19 C 0.18 8.58 4.86 86.37 0.42 9.00 16 20 N -0.60 -29.44 2.99 -675.22 -2.02 -31.46 16 21 C -0.25 -13.64 8.58 84.03 0.72 -12.92 16 22 H 0.08 3.91 6.23 -2.91 -0.02 3.89 16 23 C -0.05 -2.87 4.94 84.86 0.42 -2.45 16 24 N -0.93 -56.60 11.23 21.65 0.24 -56.35 16 25 Si 0.96 46.30 29.58 68.60 2.03 48.32 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.46 7.67 -2.38 -0.02 1.44 16 31 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.42 10.91 8.08 -92.70 -0.75 10.17 16 37 H 0.42 9.10 7.83 -92.71 -0.73 8.37 16 38 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 2.67 6.15 -2.39 -0.01 2.65 16 42 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.76 360.05 2.15 -68.62 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.39 Total: 19.63 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: 4.82 Total: 34.88 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -6.53 Total: -128.39 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.11 Total: -36.30 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 2.32 Total: -6.77 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.76 2.15 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132402879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.403 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds