Wall clock time and date at job start Tue Mar 31 2020 20:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.59071 * 2 1 4 4 C 1.53188 * 109.70378 * 239.64348 * 2 1 3 5 5 C 1.53050 * 109.31408 * 185.51232 * 4 2 1 6 6 C 1.53041 * 109.53751 * 61.36452 * 5 4 2 7 7 H 1.08993 * 109.52428 * 58.60436 * 6 5 4 8 8 N 1.46499 * 109.49380 * 178.69063 * 6 5 4 9 9 C 1.34778 * 119.99298 * 204.84238 * 8 6 5 10 10 O 1.21349 * 120.00558 * 359.71455 * 9 8 6 11 11 C 1.49455 * 119.99765 * 179.72368 * 9 8 6 12 12 O 1.21345 * 120.00115 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00116 * 179.97438 * 11 9 8 14 14 C 1.46503 * 120.00106 * 179.97438 * 13 11 9 15 15 C 1.52998 * 109.46837 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.47353 * 60.00169 * 15 14 13 17 17 F 1.39907 * 109.46610 * 180.02562 * 15 14 13 18 18 F 1.39897 * 109.47313 * 299.99564 * 15 14 13 19 19 C 1.53194 * 109.30981 * 298.63503 * 6 5 4 20 20 N 1.46922 * 108.77545 * 54.63881 * 19 6 5 21 21 C 1.36942 * 120.63269 * 126.41089 * 20 19 6 22 22 H 1.07998 * 120.00220 * 209.01269 * 21 20 19 23 23 C 1.38813 * 119.99863 * 29.00964 * 21 20 19 24 24 N 1.31627 * 119.99838 * 15.02217 * 23 21 20 25 25 Si 1.86796 * 120.00129 * 195.02083 * 23 21 20 26 26 H 1.48498 * 109.47387 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47126 * 120.00178 * 25 23 21 28 28 H 1.48500 * 109.47201 * 240.00160 * 25 23 21 29 29 H 1.08998 * 109.47309 * 299.71582 * 1 2 3 30 30 H 1.09003 * 109.47151 * 59.71289 * 1 2 3 31 31 H 1.08998 * 109.47776 * 179.71735 * 1 2 3 32 32 H 1.09002 * 109.49984 * 305.45833 * 4 2 1 33 33 H 1.08995 * 109.50182 * 65.56191 * 4 2 1 34 34 H 1.09005 * 109.45616 * 301.34589 * 5 4 2 35 35 H 1.08997 * 109.45863 * 181.38884 * 5 4 2 36 36 H 0.96994 * 120.00642 * 24.55274 * 8 6 5 37 37 H 0.97002 * 119.99501 * 359.97438 * 13 11 9 38 38 H 1.08999 * 109.47048 * 300.00027 * 14 13 11 39 39 H 1.08996 * 109.47119 * 59.99898 * 14 13 11 40 40 H 1.09000 * 109.58607 * 174.42633 * 19 6 5 41 41 H 1.08999 * 109.58725 * 294.70257 * 19 6 5 42 42 H 0.97003 * 119.99683 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5706 -0.8445 -1.1673 6 6 3.9601 -1.6609 0.0671 7 1 3.5040 -2.6491 0.0090 8 7 5.4176 -1.7975 0.1230 9 6 5.9724 -2.8373 0.7770 10 8 5.2647 -3.6574 1.3239 11 6 7.4592 -2.9800 0.8288 12 8 8.1669 -2.1601 0.2816 13 7 8.0140 -4.0195 1.4831 14 6 9.4714 -4.1598 1.5334 15 6 9.8358 -5.4138 2.3305 16 9 9.2802 -6.5382 1.7107 17 9 11.2276 -5.5474 2.3790 18 9 9.3330 -5.3021 3.6312 19 6 3.4653 -0.9425 1.3265 20 7 2.0225 -0.6981 1.1954 21 6 1.1533 -1.1125 2.1690 22 1 0.1363 -1.3692 1.9114 23 6 1.5793 -1.2029 3.4870 24 7 2.7010 -0.6222 3.8574 25 14 0.5607 -2.1484 4.7351 26 1 -0.6459 -2.7034 4.0709 27 1 1.3713 -3.2590 5.2962 28 1 0.1472 -1.2349 5.8305 29 1 -0.3634 0.5094 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6079 -1.7257 -1.2905 33 1 1.7689 -0.1673 -2.1364 34 1 4.0071 0.1518 -1.0963 35 1 3.9429 -1.3409 -2.0634 36 1 5.9834 -1.1420 -0.3142 37 1 7.4482 -4.6747 1.9208 38 1 9.8632 -4.2472 0.5201 39 1 9.9043 -3.2835 2.0159 40 1 3.6523 -1.5666 2.2004 41 1 3.9904 0.0063 1.4360 42 1 2.9985 -0.6851 4.7785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132402881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:23 Heat of formation + Delta-G solvation = -202.830281 kcal Electronic energy + Delta-G solvation = -30016.582142 eV Core-core repulsion = 25196.331714 eV Total energy + Delta-G solvation = -4820.250428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -50.55288 -48.07441 -48.01247 -40.64726 -38.83588 -37.56727 -35.71678 -34.45588 -32.86214 -30.82371 -30.04114 -29.86338 -26.46037 -25.31891 -24.46549 -23.08016 -22.27870 -20.94291 -20.28655 -19.58609 -19.01894 -18.85324 -18.77256 -17.33449 -16.85890 -16.43696 -16.01434 -15.53064 -15.40886 -14.99340 -14.88410 -14.71290 -14.44617 -14.26665 -14.16450 -14.14221 -13.98911 -13.83696 -13.67878 -13.41194 -13.18055 -12.76988 -12.46541 -12.37929 -11.95045 -11.70442 -11.50097 -11.16299 -10.92949 -10.75062 -10.58569 -10.43422 -10.28282 -9.98956 -9.82099 -9.81348 -9.53211 -9.44862 -8.74477 -8.46348 -6.65929 -5.77510 -3.22130 1.42938 1.91371 2.33657 3.22838 3.27265 3.39714 3.44987 3.48149 3.49227 3.56847 3.86059 4.46127 4.54671 4.65387 4.79986 5.27136 5.32160 5.41756 5.52197 5.59800 5.62859 5.89865 6.05642 6.21408 6.23158 6.34875 6.38231 6.42203 6.56858 6.62272 6.66191 6.76344 7.00629 7.09055 7.21288 7.40692 7.66679 7.71671 7.83837 8.20096 8.46313 9.20763 9.84913 10.39762 11.30700 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.003075 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.445960 B = 9103.781030 C =10616.938094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.113 3.887 7 H 0.087 0.913 8 N -0.684 5.684 9 C 0.505 3.495 10 O -0.508 6.508 11 C 0.521 3.479 12 O -0.515 6.515 13 N -0.707 5.707 14 C 0.077 3.923 15 C 0.449 3.551 16 F -0.176 7.176 17 F -0.173 7.173 18 F -0.174 7.174 19 C 0.166 3.834 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.072 0.928 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.291 1.291 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.405 0.595 37 H 0.422 0.578 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.020 0.980 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 -5.760 -8.379 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.057 3.943 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.009 3.991 7 H 0.105 0.895 8 N -0.335 5.335 9 C 0.284 3.716 10 O -0.383 6.383 11 C 0.303 3.697 12 O -0.389 6.389 13 N -0.364 5.364 14 C -0.049 4.049 15 C 0.394 3.606 16 F -0.158 7.158 17 F -0.155 7.155 18 F -0.155 7.155 19 C 0.039 3.961 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.218 1.218 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.240 0.760 37 H 0.260 0.740 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.073 -5.767 -8.188 16.468 hybrid contribution -0.133 -0.684 0.923 1.156 sum 12.940 -6.451 -7.265 16.181 Atomic orbital electron populations 1.21800 0.95898 1.01419 1.00287 1.20510 0.93151 0.93637 0.86976 0.95624 1.22047 0.94030 1.01427 0.99026 1.21695 0.97585 0.99826 0.96430 1.22243 0.76358 1.01466 0.99067 0.89486 1.45903 1.09262 1.25688 1.52693 1.19616 0.87309 0.83436 0.81252 1.90833 1.62417 1.41691 1.43375 1.20502 0.89967 0.80853 0.78423 1.90761 1.63472 1.40836 1.43836 1.45392 1.05766 1.29093 1.56182 1.22531 0.83833 0.95400 1.03089 1.20473 0.75145 0.85937 0.79019 1.93247 1.85117 1.55089 1.82308 1.93231 1.29488 1.96321 1.96412 1.93265 1.87044 1.96116 1.39115 1.21103 0.83786 0.97157 0.94028 1.44026 1.02454 1.64782 1.19329 1.19201 0.94772 1.38129 0.86093 0.91033 1.25084 0.97737 0.99437 0.97044 1.70006 1.23422 1.44319 1.16774 0.86253 0.79665 0.79601 0.81428 1.20196 1.21502 1.21780 0.91951 0.94292 0.92774 0.91972 0.92469 0.91955 0.92811 0.75962 0.74026 0.86287 0.86187 0.88536 0.96187 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.15 0.30 -2.18 16 2 C 0.16 3.24 3.49 -67.60 -0.24 3.00 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.03 5.38 -26.61 -0.14 -2.18 16 5 C -0.12 -1.81 5.35 -26.68 -0.14 -1.95 16 6 C 0.11 2.09 2.60 -67.81 -0.18 1.92 16 7 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 8 N -0.68 -10.96 5.08 -54.12 -0.27 -11.24 16 9 C 0.51 8.38 7.86 -11.58 -0.09 8.29 16 10 O -0.51 -10.02 16.14 5.50 0.09 -9.93 16 11 C 0.52 7.15 7.89 -11.58 -0.09 7.05 16 12 O -0.51 -7.47 16.48 5.50 0.09 -7.38 16 13 N -0.71 -7.78 5.41 -60.73 -0.33 -8.11 16 14 C 0.08 0.61 5.64 -4.04 -0.02 0.59 16 15 C 0.45 3.72 3.11 37.16 0.12 3.84 16 16 F -0.18 -1.63 17.18 2.25 0.04 -1.59 16 17 F -0.17 -1.42 17.32 2.25 0.04 -1.38 16 18 F -0.17 -1.73 17.18 2.25 0.04 -1.69 16 19 C 0.17 3.88 4.86 -3.71 -0.02 3.86 16 20 N -0.58 -14.05 2.99 -164.78 -0.49 -14.54 16 21 C -0.25 -6.73 8.60 -15.06 -0.13 -6.86 16 22 H 0.07 1.86 6.21 -52.49 -0.33 1.53 16 23 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -26.12 11.14 55.49 0.62 -25.51 16 25 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 5.59 8.07 -40.82 -0.33 5.26 16 37 H 0.42 4.67 7.83 -40.82 -0.32 4.35 16 38 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 2.65 6.06 -51.93 -0.31 2.33 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -31.26 359.90 -5.92 -37.18 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.41 Total: 6.41 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: -0.73 Total: 15.46 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.48 Total: -59.39 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.12 Total: -4.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.26 -5.92 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132402881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.648 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds