Wall clock time and date at job start Tue Mar 31 2020 20:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.59071 * 2 1 4 4 C 1.53188 * 109.70378 * 239.64348 * 2 1 3 5 5 C 1.53050 * 109.31408 * 185.51232 * 4 2 1 6 6 C 1.53041 * 109.53751 * 61.36452 * 5 4 2 7 7 H 1.08993 * 109.52428 * 58.60436 * 6 5 4 8 8 N 1.46499 * 109.49380 * 178.69063 * 6 5 4 9 9 C 1.34778 * 119.99298 * 204.84238 * 8 6 5 10 10 O 1.21349 * 120.00558 * 359.71455 * 9 8 6 11 11 C 1.49455 * 119.99765 * 179.72368 * 9 8 6 12 12 O 1.21345 * 120.00115 * 359.97438 * 11 9 8 13 13 N 1.34776 * 120.00116 * 179.97438 * 11 9 8 14 14 C 1.46503 * 120.00106 * 179.97438 * 13 11 9 15 15 C 1.52998 * 109.46837 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.47353 * 60.00169 * 15 14 13 17 17 F 1.39907 * 109.46610 * 180.02562 * 15 14 13 18 18 F 1.39897 * 109.47313 * 299.99564 * 15 14 13 19 19 C 1.53194 * 109.30981 * 298.63503 * 6 5 4 20 20 N 1.46922 * 108.77545 * 54.63881 * 19 6 5 21 21 C 1.36942 * 120.63269 * 126.41089 * 20 19 6 22 22 H 1.07998 * 120.00220 * 209.01269 * 21 20 19 23 23 C 1.38813 * 119.99863 * 29.00964 * 21 20 19 24 24 N 1.31627 * 119.99838 * 15.02217 * 23 21 20 25 25 Si 1.86796 * 120.00129 * 195.02083 * 23 21 20 26 26 H 1.48498 * 109.47387 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47126 * 120.00178 * 25 23 21 28 28 H 1.48500 * 109.47201 * 240.00160 * 25 23 21 29 29 H 1.08998 * 109.47309 * 299.71582 * 1 2 3 30 30 H 1.09003 * 109.47151 * 59.71289 * 1 2 3 31 31 H 1.08998 * 109.47776 * 179.71735 * 1 2 3 32 32 H 1.09002 * 109.49984 * 305.45833 * 4 2 1 33 33 H 1.08995 * 109.50182 * 65.56191 * 4 2 1 34 34 H 1.09005 * 109.45616 * 301.34589 * 5 4 2 35 35 H 1.08997 * 109.45863 * 181.38884 * 5 4 2 36 36 H 0.96994 * 120.00642 * 24.55274 * 8 6 5 37 37 H 0.97002 * 119.99501 * 359.97438 * 13 11 9 38 38 H 1.08999 * 109.47048 * 300.00027 * 14 13 11 39 39 H 1.08996 * 109.47119 * 59.99898 * 14 13 11 40 40 H 1.09000 * 109.58607 * 174.42633 * 19 6 5 41 41 H 1.08999 * 109.58725 * 294.70257 * 19 6 5 42 42 H 0.97003 * 119.99683 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5706 -0.8445 -1.1673 6 6 3.9601 -1.6609 0.0671 7 1 3.5040 -2.6491 0.0090 8 7 5.4176 -1.7975 0.1230 9 6 5.9724 -2.8373 0.7770 10 8 5.2647 -3.6574 1.3239 11 6 7.4592 -2.9800 0.8288 12 8 8.1669 -2.1601 0.2816 13 7 8.0140 -4.0195 1.4831 14 6 9.4714 -4.1598 1.5334 15 6 9.8358 -5.4138 2.3305 16 9 9.2802 -6.5382 1.7107 17 9 11.2276 -5.5474 2.3790 18 9 9.3330 -5.3021 3.6312 19 6 3.4653 -0.9425 1.3265 20 7 2.0225 -0.6981 1.1954 21 6 1.1533 -1.1125 2.1690 22 1 0.1363 -1.3692 1.9114 23 6 1.5793 -1.2029 3.4870 24 7 2.7010 -0.6222 3.8574 25 14 0.5607 -2.1484 4.7351 26 1 -0.6459 -2.7034 4.0709 27 1 1.3713 -3.2590 5.2962 28 1 0.1472 -1.2349 5.8305 29 1 -0.3634 0.5094 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.6079 -1.7257 -1.2905 33 1 1.7689 -0.1673 -2.1364 34 1 4.0071 0.1518 -1.0963 35 1 3.9429 -1.3409 -2.0634 36 1 5.9834 -1.1420 -0.3142 37 1 7.4482 -4.6747 1.9208 38 1 9.8632 -4.2472 0.5201 39 1 9.9043 -3.2835 2.0159 40 1 3.6523 -1.5666 2.2004 41 1 3.9904 0.0063 1.4360 42 1 2.9985 -0.6851 4.7785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132402881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:22 Heat of formation + Delta-G solvation = -225.767932 kcal Electronic energy + Delta-G solvation = -30017.576793 eV Core-core repulsion = 25196.331714 eV Total energy + Delta-G solvation = -4821.245080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.26172 -48.76554 -48.74976 -41.86666 -40.16961 -39.07697 -36.77913 -35.87829 -34.65257 -32.29976 -31.72585 -30.84979 -27.96012 -27.07627 -25.64210 -24.16608 -23.76981 -22.25978 -21.62214 -21.10159 -20.00149 -19.72801 -19.57576 -18.39383 -18.25872 -17.93089 -17.26550 -17.05198 -16.62975 -16.16802 -15.87790 -15.69716 -15.56425 -15.35863 -15.32024 -15.15777 -15.02716 -14.94464 -14.87534 -14.84820 -14.49110 -14.15847 -14.05941 -13.52395 -13.11438 -13.07983 -12.94386 -12.75795 -12.71142 -12.55885 -12.25698 -12.10726 -11.95633 -11.63927 -11.41683 -11.15594 -10.80921 -10.72469 -10.54321 -10.25126 -8.62332 -7.84540 -5.30464 0.22559 0.94855 1.43024 1.46723 1.54880 1.55412 2.04042 2.33358 2.52288 2.54719 2.88151 3.09395 3.28290 3.34725 3.71397 3.92624 4.03944 4.09314 4.17037 4.24476 4.38026 4.58584 4.67192 4.71865 4.79728 4.89147 5.02175 5.08764 5.16179 5.24027 5.31330 5.32985 5.56194 5.61867 5.63556 5.72459 5.78152 6.18342 6.43285 6.53966 6.91905 7.17390 7.90319 8.39492 9.21015 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.003075 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.445960 B = 9103.781030 C =10616.938094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.066 0.934 8 N -0.676 5.676 9 C 0.500 3.500 10 O -0.546 6.546 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.699 5.699 14 C 0.077 3.923 15 C 0.456 3.544 16 F -0.181 7.181 17 F -0.169 7.169 18 F -0.185 7.185 19 C 0.177 3.823 20 N -0.602 5.602 21 C -0.248 4.248 22 H 0.077 0.923 23 C -0.052 4.052 24 N -0.935 5.935 25 Si 0.956 3.044 26 H -0.263 1.263 27 H -0.299 1.299 28 H -0.292 1.292 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.419 0.581 37 H 0.421 0.579 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.049 0.951 41 H -0.002 1.002 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.509 -5.812 -10.771 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.084 0.916 8 N -0.328 5.328 9 C 0.280 3.720 10 O -0.423 6.423 11 C 0.312 3.688 12 O -0.396 6.396 13 N -0.355 5.355 14 C -0.047 4.047 15 C 0.401 3.599 16 F -0.163 7.163 17 F -0.151 7.151 18 F -0.166 7.166 19 C 0.050 3.950 20 N -0.326 5.326 21 C -0.378 4.378 22 H 0.094 0.906 23 C -0.247 4.247 24 N -0.582 5.582 25 Si 0.785 3.215 26 H -0.187 1.187 27 H -0.226 1.226 28 H -0.219 1.219 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.256 0.744 37 H 0.259 0.741 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.067 0.933 41 H 0.016 0.984 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.550 -5.816 -10.621 18.173 hybrid contribution -0.253 -0.659 1.643 1.788 sum 13.297 -6.475 -8.979 17.302 Atomic orbital electron populations 1.21734 0.94711 1.01237 1.01040 1.20828 0.94328 0.93423 0.86763 0.96124 1.21946 0.94232 1.01122 0.98297 1.21683 0.97307 1.00044 0.95742 1.21781 0.77561 1.00138 0.98266 0.91588 1.45758 1.08512 1.26025 1.52548 1.20216 0.88823 0.82834 0.80162 1.90815 1.63751 1.43015 1.44735 1.19779 0.88269 0.81607 0.79138 1.90764 1.62971 1.41275 1.44600 1.45360 1.07333 1.27931 1.54845 1.22788 0.81631 0.95723 1.04587 1.20447 0.75141 0.85831 0.78481 1.93240 1.85237 1.55481 1.82324 1.93240 1.29172 1.96294 1.96361 1.93249 1.87236 1.96152 1.40008 1.20790 0.83895 0.95537 0.94828 1.44320 1.02393 1.65660 1.20234 1.19530 0.95231 1.36393 0.86675 0.90590 1.25770 0.98990 1.01055 0.98910 1.70164 1.25176 1.46403 1.16423 0.85369 0.78686 0.78031 0.79440 1.18671 1.22621 1.21862 0.94369 0.90336 0.93381 0.92487 0.88547 0.90907 0.89328 0.74357 0.74082 0.83980 0.84723 0.93266 0.98377 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.95 71.98 0.57 -3.92 16 2 C 0.15 5.80 3.49 44.97 0.16 5.96 16 3 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -3.41 5.38 30.67 0.16 -3.25 16 5 C -0.11 -3.07 5.35 30.62 0.16 -2.90 16 6 C 0.13 4.70 2.60 45.07 0.12 4.82 16 7 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 8 N -0.68 -21.35 5.08 -443.49 -2.25 -23.60 16 9 C 0.50 16.63 7.86 87.27 0.69 17.32 16 10 O -0.55 -22.19 16.14 -3.24 -0.05 -22.24 16 11 C 0.53 14.06 7.89 87.27 0.69 14.75 16 12 O -0.52 -14.17 16.48 -3.23 -0.05 -14.22 16 13 N -0.70 -14.64 5.41 -464.41 -2.51 -17.15 16 14 C 0.08 1.07 5.64 86.38 0.49 1.56 16 15 C 0.46 6.91 3.11 71.98 0.22 7.14 16 16 F -0.18 -3.13 17.18 44.97 0.77 -2.36 16 17 F -0.17 -2.48 17.32 44.97 0.78 -1.70 16 18 F -0.18 -3.53 17.18 44.97 0.77 -2.76 16 19 C 0.18 8.51 4.86 86.36 0.42 8.93 16 20 N -0.60 -29.45 2.99 -675.24 -2.02 -31.47 16 21 C -0.25 -13.47 8.60 84.03 0.72 -12.75 16 22 H 0.08 3.98 6.21 -2.91 -0.02 3.96 16 23 C -0.05 -2.98 4.96 84.86 0.42 -2.56 16 24 N -0.93 -56.71 11.14 21.65 0.24 -56.47 16 25 Si 0.96 46.35 29.58 68.60 2.03 48.38 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 H 0.04 1.47 7.62 -2.39 -0.02 1.46 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.42 10.94 8.07 -92.71 -0.75 10.19 16 37 H 0.42 9.17 7.83 -92.71 -0.73 8.45 16 38 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.24 14.56 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.90 359.90 2.14 -68.75 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.39 Total: 19.75 kcal Atomic # 6 Polarization: 30.27 SS G_CDS: 4.82 Total: 35.09 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.54 Total: -128.68 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.11 Total: -36.47 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 2.32 Total: -6.82 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.90 2.14 -68.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132402881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.015 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds