Wall clock time and date at job start Tue Mar 31 2020 20:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.45264 * 2 1 4 4 C 1.53045 * 109.43012 * 119.97825 * 2 1 3 5 5 C 1.53194 * 109.33802 * 58.69103 * 4 2 1 6 6 N 1.46919 * 108.77761 * 54.61438 * 5 4 2 7 7 C 1.34783 * 120.62756 * 126.37257 * 6 5 4 8 8 O 1.21526 * 119.99797 * 176.06612 * 7 6 5 9 9 C 1.48066 * 120.00015 * 356.06169 * 7 6 5 10 10 C 1.39863 * 120.93493 * 53.27559 * 9 7 6 11 11 C 1.38086 * 119.01982 * 179.72919 * 10 9 7 12 12 N 1.31849 * 120.94299 * 0.55689 * 11 10 9 13 13 C 1.31758 * 122.06709 * 359.71594 * 12 11 10 14 14 C 1.38358 * 120.87340 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 120.52077 * 180.02562 * 14 13 12 16 16 C 1.46922 * 118.74082 * 306.38867 * 6 5 4 17 17 C 1.53039 * 109.45740 * 240.02746 * 2 1 3 18 18 H 1.09005 * 109.49417 * 181.36225 * 17 2 1 19 19 C 1.53003 * 109.49387 * 61.30228 * 17 2 1 20 20 N 1.46498 * 109.46715 * 175.06220 * 19 17 2 21 21 C 1.36944 * 119.99759 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00073 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99853 * 179.72638 * 23 21 20 26 26 H 1.48493 * 109.47484 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47148 * 119.99978 * 25 23 21 28 28 H 1.48508 * 109.46815 * 239.99563 * 25 23 21 29 29 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47082 * 299.96611 * 1 2 3 31 31 H 1.08997 * 109.46869 * 59.96827 * 1 2 3 32 32 H 1.08994 * 109.50099 * 298.72139 * 4 2 1 33 33 H 1.09002 * 109.49323 * 178.65426 * 4 2 1 34 34 H 1.09004 * 109.58525 * 294.82473 * 5 4 2 35 35 H 1.09004 * 109.70454 * 174.47500 * 5 4 2 36 36 H 1.07995 * 120.48997 * 359.97438 * 10 9 7 37 37 H 1.08002 * 119.52781 * 180.25548 * 11 10 9 38 38 H 1.08001 * 119.55995 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.58850 * 293.82136 * 16 6 5 40 40 H 1.09000 * 109.58421 * 173.39689 * 16 6 5 41 41 H 1.08995 * 109.47210 * 55.05854 * 19 17 2 42 42 H 1.09001 * 109.46815 * 295.05720 * 19 17 2 43 43 H 0.96996 * 120.00540 * 359.97438 * 20 19 17 44 44 H 0.96994 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0392 -0.7212 1.2502 5 6 1.4995 -2.1549 1.2639 6 7 1.8631 -2.8092 -0.0003 7 6 2.5175 -3.9875 -0.0002 8 8 2.7495 -4.5537 -1.0502 9 6 2.9538 -4.5920 1.2791 10 6 2.0468 -4.7962 2.3240 11 6 2.4953 -5.3683 3.4981 12 7 3.7600 -5.7102 3.6457 13 6 4.6493 -5.5310 2.6901 14 6 4.2862 -4.9702 1.4785 15 17 5.4652 -4.7388 0.2255 16 6 1.5002 -2.1545 -1.2645 17 6 2.0398 -0.7209 -1.2500 18 1 3.1296 -0.7425 -1.2385 19 6 1.5569 0.0193 -2.4989 20 7 2.1411 -0.6010 -3.6906 21 6 1.8495 -0.1052 -4.9334 22 1 1.1885 0.7428 -5.0350 23 6 2.4035 -0.6926 -6.0626 24 7 3.2095 -1.7257 -5.9387 25 14 1.9997 -0.0210 -7.7582 26 1 1.0723 1.1312 -7.6263 27 1 3.2498 0.4231 -8.4253 28 1 1.3554 -1.0839 -8.5710 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6946 -0.1942 2.1399 33 1 3.1289 -0.7427 1.2393 34 1 0.4145 -2.1359 1.3668 35 1 1.9361 -2.7039 2.0983 36 1 1.0102 -4.5143 2.2128 37 1 1.8011 -5.5335 4.3088 38 1 5.6750 -5.8264 2.8545 39 1 0.4153 -2.1356 -1.3679 40 1 1.9393 -2.7018 -2.0986 41 1 1.8651 1.0633 -2.4445 42 1 0.4698 -0.0361 -2.5564 43 1 2.7345 -1.3629 -3.5994 44 1 3.5963 -2.1364 -6.7277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133139304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:49 Heat of formation + Delta-G solvation = 11.317898 kcal Electronic energy + Delta-G solvation = -27460.976282 eV Core-core repulsion = 23632.577921 eV Total energy + Delta-G solvation = -3828.398362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15668 -39.85511 -38.07246 -36.80479 -35.06472 -33.75683 -32.84231 -31.85091 -31.48354 -29.84168 -27.78007 -26.21385 -25.20011 -24.02186 -23.87290 -23.13871 -21.25400 -20.44181 -18.59246 -17.74454 -17.12576 -16.99526 -16.79001 -16.22573 -15.53128 -15.06536 -14.97444 -14.95237 -14.49255 -14.46089 -14.23241 -13.65668 -13.58361 -13.27318 -13.03796 -12.76912 -12.50666 -12.42886 -12.26271 -12.00648 -11.70636 -11.37727 -11.29630 -11.12836 -10.94201 -10.82492 -10.68907 -10.45989 -10.32003 -10.21985 -10.08946 -9.93579 -9.66317 -9.56358 -9.33006 -8.84632 -8.56145 -6.87906 -5.70877 -3.00764 0.37309 0.48576 1.77335 2.50917 2.83578 3.24004 3.46200 3.51119 3.53987 3.95588 4.03412 4.27085 4.39089 4.57623 4.64856 4.71147 4.78425 4.84986 5.08254 5.11120 5.17311 5.21587 5.26918 5.42106 5.50192 5.58478 5.62502 5.65089 5.76829 5.84124 5.90558 5.96624 5.98358 6.10900 6.28379 6.30737 6.32391 6.51076 6.57390 6.75509 6.87189 7.31299 7.34983 7.73988 8.05128 8.46654 9.57788 10.15507 10.49457 11.51390 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003402 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.411368 B = 8229.102418 C = 9619.281220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.096 3.904 6 N -0.598 5.598 7 C 0.551 3.449 8 O -0.499 6.499 9 C -0.064 4.064 10 C -0.136 4.136 11 C 0.099 3.901 12 N -0.461 5.461 13 C 0.114 3.886 14 C -0.055 4.055 15 Cl -0.023 7.023 16 C 0.121 3.879 17 C -0.102 4.102 18 H 0.074 0.926 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -3.808 24.476 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.331 5.331 7 C 0.337 3.663 8 O -0.373 6.373 9 C -0.077 4.077 10 C -0.157 4.157 11 C -0.058 4.058 12 N -0.170 5.170 13 C -0.044 4.044 14 C -0.085 4.085 15 Cl 0.006 6.994 16 C 0.000 4.000 17 C -0.122 4.122 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.257 -4.364 24.411 24.901 hybrid contribution -0.153 0.553 -1.809 1.897 sum -2.410 -3.811 22.603 23.048 Atomic orbital electron populations 1.21991 0.95159 1.01943 1.01901 1.21078 0.96052 0.99469 0.93796 0.90691 1.21939 1.01239 0.94850 0.98649 1.22030 1.00523 0.94101 0.85991 1.48061 1.56458 1.20356 1.08267 1.18032 0.78783 0.81650 0.87879 1.90916 1.54249 1.60696 1.31450 1.20408 0.92923 0.98794 0.95530 1.22400 1.00956 0.99462 0.92840 1.22852 0.92461 0.93837 0.96611 1.67701 1.02799 1.15573 1.30884 1.22840 1.00246 0.94545 0.86794 1.22248 0.91080 1.01972 0.93197 1.98460 1.55399 1.94980 1.50515 1.21824 1.00155 0.92990 0.85011 1.21698 1.00973 0.94225 0.95297 0.90759 1.20673 0.95988 0.94736 0.85291 1.42429 1.56898 1.37662 1.00818 1.19232 1.23248 1.11045 0.83748 0.91201 1.24756 1.00001 0.98320 0.97808 1.69682 1.35389 1.24192 1.28407 0.86147 0.77400 0.77937 0.84875 1.20606 1.21922 1.21878 0.92490 0.93095 0.91685 0.90735 0.91509 0.90638 0.89981 0.83204 0.81387 0.81162 0.90973 0.87719 0.96122 0.95904 0.78133 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.11 37.16 0.30 -1.29 16 2 C -0.08 -0.99 2.71 -90.57 -0.25 -1.23 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.22 5.62 -26.61 -0.15 -1.37 16 5 C 0.10 0.90 5.09 -3.71 -0.02 0.88 16 6 N -0.60 -8.05 2.97 -173.80 -0.52 -8.57 16 7 C 0.55 8.41 6.73 -12.23 -0.08 8.33 16 8 O -0.50 -9.92 15.68 5.34 0.08 -9.84 16 9 C -0.06 -0.77 4.93 -104.62 -0.52 -1.29 16 10 C -0.14 -1.14 7.54 -39.03 -0.29 -1.43 16 11 C 0.10 0.74 11.17 -17.60 -0.20 0.54 16 12 N -0.46 -4.35 10.33 -13.27 -0.14 -4.49 16 13 C 0.11 1.10 10.99 -17.54 -0.19 0.91 16 14 C -0.06 -0.65 6.37 -38.90 -0.25 -0.90 16 15 Cl -0.02 -0.31 27.56 -51.86 -1.43 -1.74 16 16 C 0.12 1.96 5.04 -3.71 -0.02 1.94 16 17 C -0.10 -1.62 2.15 -90.50 -0.19 -1.81 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.16 3.16 5.19 -4.04 -0.02 3.13 16 20 N -0.73 -18.73 5.38 -59.91 -0.32 -19.05 16 21 C -0.24 -6.84 9.99 -15.05 -0.15 -6.99 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 25 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 29 H 0.06 0.59 4.98 -51.93 -0.26 0.33 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.59 6.70 -51.93 -0.35 0.24 16 35 H 0.08 0.65 4.69 -51.93 -0.24 0.40 16 36 H 0.15 0.91 7.36 -52.49 -0.39 0.52 16 37 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 40 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 43 H 0.38 10.56 6.90 -40.82 -0.28 10.28 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -34.42 360.94 -9.11 -43.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.81 Total: 6.17 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.12 Total: -1.05 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.25 Total: -60.31 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.43 Total: -1.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.42 -9.11 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133139304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.852 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds