Wall clock time and date at job start Tue Mar 31 2020 20:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.45264 * 2 1 4 4 C 1.53045 * 109.43012 * 119.97825 * 2 1 3 5 5 C 1.53194 * 109.33802 * 58.69103 * 4 2 1 6 6 N 1.46919 * 108.77761 * 54.61438 * 5 4 2 7 7 C 1.34783 * 120.62756 * 126.37257 * 6 5 4 8 8 O 1.21526 * 119.99797 * 176.06612 * 7 6 5 9 9 C 1.48066 * 120.00015 * 356.06169 * 7 6 5 10 10 C 1.39863 * 120.93493 * 53.27559 * 9 7 6 11 11 C 1.38086 * 119.01982 * 179.72919 * 10 9 7 12 12 N 1.31849 * 120.94299 * 0.55689 * 11 10 9 13 13 C 1.31758 * 122.06709 * 359.71594 * 12 11 10 14 14 C 1.38358 * 120.87340 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 120.52077 * 180.02562 * 14 13 12 16 16 C 1.46922 * 118.74082 * 306.38867 * 6 5 4 17 17 C 1.53039 * 109.45740 * 240.02746 * 2 1 3 18 18 H 1.09005 * 109.49417 * 181.36225 * 17 2 1 19 19 C 1.53003 * 109.49387 * 61.30228 * 17 2 1 20 20 N 1.46498 * 109.46715 * 175.06220 * 19 17 2 21 21 C 1.36944 * 119.99759 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00073 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99853 * 179.72638 * 23 21 20 26 26 H 1.48493 * 109.47484 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47148 * 119.99978 * 25 23 21 28 28 H 1.48508 * 109.46815 * 239.99563 * 25 23 21 29 29 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47082 * 299.96611 * 1 2 3 31 31 H 1.08997 * 109.46869 * 59.96827 * 1 2 3 32 32 H 1.08994 * 109.50099 * 298.72139 * 4 2 1 33 33 H 1.09002 * 109.49323 * 178.65426 * 4 2 1 34 34 H 1.09004 * 109.58525 * 294.82473 * 5 4 2 35 35 H 1.09004 * 109.70454 * 174.47500 * 5 4 2 36 36 H 1.07995 * 120.48997 * 359.97438 * 10 9 7 37 37 H 1.08002 * 119.52781 * 180.25548 * 11 10 9 38 38 H 1.08001 * 119.55995 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.58850 * 293.82136 * 16 6 5 40 40 H 1.09000 * 109.58421 * 173.39689 * 16 6 5 41 41 H 1.08995 * 109.47210 * 55.05854 * 19 17 2 42 42 H 1.09001 * 109.46815 * 295.05720 * 19 17 2 43 43 H 0.96996 * 120.00540 * 359.97438 * 20 19 17 44 44 H 0.96994 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0392 -0.7212 1.2502 5 6 1.4995 -2.1549 1.2639 6 7 1.8631 -2.8092 -0.0003 7 6 2.5175 -3.9875 -0.0002 8 8 2.7495 -4.5537 -1.0502 9 6 2.9538 -4.5920 1.2791 10 6 2.0468 -4.7962 2.3240 11 6 2.4953 -5.3683 3.4981 12 7 3.7600 -5.7102 3.6457 13 6 4.6493 -5.5310 2.6901 14 6 4.2862 -4.9702 1.4785 15 17 5.4652 -4.7388 0.2255 16 6 1.5002 -2.1545 -1.2645 17 6 2.0398 -0.7209 -1.2500 18 1 3.1296 -0.7425 -1.2385 19 6 1.5569 0.0193 -2.4989 20 7 2.1411 -0.6010 -3.6906 21 6 1.8495 -0.1052 -4.9334 22 1 1.1885 0.7428 -5.0350 23 6 2.4035 -0.6926 -6.0626 24 7 3.2095 -1.7257 -5.9387 25 14 1.9997 -0.0210 -7.7582 26 1 1.0723 1.1312 -7.6263 27 1 3.2498 0.4231 -8.4253 28 1 1.3554 -1.0839 -8.5710 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6946 -0.1942 2.1399 33 1 3.1289 -0.7427 1.2393 34 1 0.4145 -2.1359 1.3668 35 1 1.9361 -2.7039 2.0983 36 1 1.0102 -4.5143 2.2128 37 1 1.8011 -5.5335 4.3088 38 1 5.6750 -5.8264 2.8545 39 1 0.4153 -2.1356 -1.3679 40 1 1.9393 -2.7018 -2.0986 41 1 1.8651 1.0633 -2.4445 42 1 0.4698 -0.0361 -2.5564 43 1 2.7345 -1.3629 -3.5994 44 1 3.5963 -2.1364 -6.7277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133139304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:46 Heat of formation + Delta-G solvation = -12.179771 kcal Electronic energy + Delta-G solvation = -27461.995218 eV Core-core repulsion = 23632.577921 eV Total energy + Delta-G solvation = -3829.417297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.09715 -40.79486 -39.25920 -37.75047 -36.69414 -35.13091 -33.72236 -33.49288 -32.22154 -31.44867 -28.78709 -27.63558 -26.37864 -25.05755 -24.89085 -24.51431 -22.61056 -21.52112 -19.80346 -18.97162 -18.67071 -17.98748 -17.67550 -17.21607 -16.81097 -16.47901 -16.15096 -15.92009 -15.69124 -15.36287 -15.27308 -15.10185 -14.92863 -14.53892 -14.38194 -14.15330 -13.80737 -13.23118 -13.18734 -13.06602 -12.99447 -12.90018 -12.65671 -12.45942 -12.34344 -12.14656 -12.03765 -11.91929 -11.76203 -11.54685 -11.34239 -11.25195 -10.97045 -10.88007 -10.56506 -10.10075 -9.68827 -9.01665 -7.95688 -5.26132 -0.45678 -0.21167 0.88884 1.39276 1.44074 1.46012 1.56097 1.80161 2.50005 2.54138 3.11528 3.35157 3.37544 3.53437 3.64261 3.68065 3.77143 3.83608 4.03215 4.04118 4.16572 4.24267 4.35896 4.43502 4.48098 4.54624 4.55980 4.66310 4.75149 4.76939 4.81108 4.89965 4.97372 5.09255 5.15745 5.24572 5.29472 5.33654 5.38228 5.43688 5.48108 5.60756 6.22830 6.24904 6.66030 6.92379 7.30270 8.06960 8.28636 9.27907 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003402 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.411368 B = 8229.102418 C = 9619.281220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.593 5.593 7 C 0.546 3.454 8 O -0.562 6.562 9 C -0.082 4.082 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.469 5.469 13 C 0.119 3.881 14 C -0.074 4.074 15 Cl -0.055 7.055 16 C 0.131 3.869 17 C -0.090 4.090 18 H 0.045 0.955 19 C 0.160 3.840 20 N -0.749 5.749 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.261 1.261 27 H -0.294 1.294 28 H -0.295 1.295 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.180 0.820 37 H 0.214 0.786 38 H 0.188 0.812 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.034 0.966 43 H 0.369 0.631 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -2.716 28.238 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.030 4.030 6 N -0.324 5.324 7 C 0.333 3.667 8 O -0.440 6.440 9 C -0.094 4.094 10 C -0.143 4.143 11 C -0.041 4.041 12 N -0.178 5.178 13 C -0.038 4.038 14 C -0.104 4.104 15 Cl -0.027 7.027 16 C 0.009 3.991 17 C -0.110 4.110 18 H 0.064 0.936 19 C 0.034 3.966 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.185 1.185 27 H -0.221 1.221 28 H -0.222 1.222 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.198 0.802 37 H 0.230 0.770 38 H 0.205 0.795 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.787 -3.209 28.247 28.829 hybrid contribution 0.543 0.235 -2.831 2.893 sum -4.244 -2.974 25.416 25.939 Atomic orbital electron populations 1.21964 0.93551 1.02350 1.02715 1.21067 0.97258 0.99223 0.92274 0.90290 1.21943 1.00424 0.94945 0.98804 1.22437 1.02504 0.93842 0.84264 1.48120 1.55622 1.19867 1.08816 1.18615 0.77919 0.81679 0.88461 1.90881 1.56602 1.62550 1.34006 1.20275 0.93799 1.00311 0.95009 1.22733 1.01530 0.98384 0.91670 1.23589 0.92202 0.91261 0.97050 1.67829 1.03733 1.15792 1.30468 1.23063 1.01299 0.93623 0.85824 1.22400 0.90679 1.03972 0.93340 1.98445 1.56685 1.95331 1.52204 1.21448 1.00040 0.92585 0.85075 1.21549 0.99175 0.94237 0.96039 0.93615 1.20869 0.96137 0.94748 0.84890 1.42705 1.56920 1.37445 1.02074 1.19700 1.22212 1.10619 0.84942 0.90200 1.25654 1.00581 0.99018 1.01934 1.69878 1.37284 1.26106 1.29017 0.85038 0.77179 0.77607 0.79736 1.18491 1.22150 1.22192 0.92242 0.89870 0.93325 0.86729 0.92985 0.87665 0.87797 0.80226 0.76960 0.79539 0.89995 0.93234 0.95909 0.94825 0.79913 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.11 71.98 0.58 -2.01 16 2 C -0.08 -1.67 2.71 -10.76 -0.03 -1.70 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -1.93 5.62 30.67 0.17 -1.76 16 5 C 0.09 1.38 5.09 86.36 0.44 1.82 16 6 N -0.59 -15.84 2.97 -822.08 -2.44 -18.28 16 7 C 0.55 17.21 6.73 86.85 0.58 17.80 16 8 O -0.56 -24.25 15.68 -3.80 -0.06 -24.31 16 9 C -0.08 -1.90 4.93 -19.87 -0.10 -1.99 16 10 C -0.12 -1.61 7.54 22.63 0.17 -1.44 16 11 C 0.12 1.19 11.17 84.65 0.95 2.14 16 12 N -0.47 -7.36 10.33 -195.90 -2.02 -9.38 16 13 C 0.12 2.14 10.99 84.73 0.93 3.07 16 14 C -0.07 -1.76 6.37 22.71 0.14 -1.61 16 15 Cl -0.06 -1.64 27.56 -2.72 -0.07 -1.71 16 16 C 0.13 4.43 5.04 86.36 0.44 4.86 16 17 C -0.09 -2.93 2.15 -10.72 -0.02 -2.95 16 18 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 19 C 0.16 6.41 5.19 86.38 0.45 6.85 16 20 N -0.75 -40.04 5.38 -343.45 -1.85 -41.88 16 21 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 24 N -0.97 -63.46 13.06 21.65 0.28 -63.18 16 25 Si 0.98 47.97 29.55 68.60 2.03 50.00 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 28 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 29 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.08 6.70 -2.39 -0.02 1.06 16 35 H 0.10 1.19 4.69 -2.38 -0.01 1.18 16 36 H 0.18 1.24 7.36 -2.91 -0.02 1.22 16 37 H 0.21 0.31 8.06 -2.91 -0.02 0.28 16 38 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.08 2.56 6.70 -2.39 -0.02 2.54 16 40 H 0.05 2.25 6.23 -2.39 -0.01 2.23 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.03 1.30 6.73 -2.39 -0.02 1.28 16 43 H 0.37 21.82 6.90 -92.71 -0.64 21.18 16 44 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -82.21 360.94 2.27 -79.94 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.40 Total: 23.32 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.01 Total: 5.49 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -6.03 Total: -132.72 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.71 kcal Total: -82.21 2.27 -79.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133139304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.760 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds