Wall clock time and date at job start Tue Mar 31 2020 20:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.45724 * 2 1 4 4 C 1.53077 * 109.44468 * 119.82176 * 2 1 3 5 5 C 1.53187 * 109.29651 * 181.23980 * 4 2 1 6 6 N 1.46930 * 108.89375 * 305.57724 * 5 4 2 7 7 C 1.34777 * 120.63302 * 233.52083 * 6 5 4 8 8 O 1.21527 * 119.99752 * 174.69432 * 7 6 5 9 9 C 1.48071 * 119.99991 * 354.69035 * 7 6 5 10 10 C 1.39868 * 120.93106 * 312.03290 * 9 7 6 11 11 C 1.38083 * 119.02126 * 179.72954 * 10 9 7 12 12 N 1.31851 * 120.93333 * 0.55584 * 11 10 9 13 13 C 1.31750 * 122.07885 * 359.71945 * 12 11 10 14 14 C 1.38363 * 120.86590 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.51759 * 180.02562 * 14 13 12 16 16 C 1.46933 * 118.73717 * 53.53610 * 6 5 4 17 17 C 1.53038 * 109.46100 * 240.02825 * 2 1 3 18 18 H 1.09000 * 109.49865 * 298.58001 * 17 2 1 19 19 C 1.53000 * 109.52303 * 58.65758 * 17 2 1 20 20 N 1.46508 * 109.46902 * 184.85482 * 19 17 2 21 21 C 1.36933 * 119.99866 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99963 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00350 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99484 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00334 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46980 * 90.00424 * 25 23 21 27 27 H 1.48508 * 109.47527 * 210.00141 * 25 23 21 28 28 H 1.48497 * 109.47472 * 330.00406 * 25 23 21 29 29 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47466 * 299.96731 * 1 2 3 31 31 H 1.08995 * 109.47511 * 59.97208 * 1 2 3 32 32 H 1.08997 * 109.38776 * 61.35962 * 4 2 1 33 33 H 1.08998 * 109.61892 * 301.25563 * 4 2 1 34 34 H 1.08993 * 109.58791 * 185.72073 * 5 4 2 35 35 H 1.08995 * 109.59146 * 65.43427 * 5 4 2 36 36 H 1.08009 * 120.48895 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.53225 * 180.24886 * 11 10 9 38 38 H 1.07997 * 119.57174 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.58084 * 66.18130 * 16 6 5 40 40 H 1.08994 * 109.58537 * 186.60873 * 16 6 5 41 41 H 1.08996 * 109.47075 * 304.85197 * 19 17 2 42 42 H 1.08997 * 109.46958 * 64.85961 * 19 17 2 43 43 H 0.96997 * 119.99631 * 0.02562 * 20 19 17 44 44 H 0.97007 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0395 -0.7178 1.2523 5 6 3.5711 -0.6888 1.2645 6 7 4.0677 -1.2492 0.0003 7 6 4.9617 -2.2578 0.0005 8 8 5.2919 -2.7771 -1.0475 9 6 5.5416 -2.7329 1.2773 10 6 6.0535 -1.8297 2.2146 11 6 6.5800 -2.3157 3.3950 12 7 6.6143 -3.6109 3.6393 13 6 6.1486 -4.4971 2.7828 14 6 5.5977 -4.0983 1.5778 15 17 4.9862 -5.2737 0.4561 16 6 3.5713 -0.6889 -1.2640 17 6 2.0398 -0.7209 -1.2500 18 1 1.6976 -1.7557 -1.2382 19 6 1.5029 -0.0196 -2.4994 20 7 1.8952 -0.7766 -3.6908 21 6 1.5254 -0.3370 -4.9338 22 1 0.9448 0.5680 -5.0359 23 6 1.8974 -1.0539 -6.0627 24 7 2.6053 -2.1565 -5.9383 25 14 1.3923 -0.4546 -7.7582 26 1 2.4382 0.4531 -8.2943 27 1 1.2331 -1.6179 -8.6675 28 1 0.1040 0.2775 -7.6611 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6953 -1.7520 1.2419 33 1 1.6590 -0.2162 2.1420 34 1 3.9412 -1.2847 2.0987 35 1 3.9163 0.3398 1.3688 36 1 6.0336 -0.7676 2.0197 37 1 6.9738 -1.6255 4.1263 38 1 6.1967 -5.5486 3.0246 39 1 3.9145 0.3406 -1.3671 40 1 3.9416 -1.2849 -2.0981 41 1 0.4157 0.0359 -2.4459 42 1 1.9159 0.9874 -2.5565 43 1 2.4169 -1.5892 -3.5991 44 1 2.8651 -2.6578 -6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133139305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:52 Heat of formation + Delta-G solvation = 8.038011 kcal Electronic energy + Delta-G solvation = -27279.329799 eV Core-core repulsion = 23450.789211 eV Total energy + Delta-G solvation = -3828.540588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11246 -39.73805 -37.96070 -36.80093 -35.10462 -33.83778 -32.95322 -31.84088 -31.47826 -29.82904 -28.33832 -26.01966 -24.94043 -23.89935 -23.23000 -23.06437 -21.27433 -20.39722 -19.49050 -17.87357 -17.14963 -17.00467 -16.71722 -16.20682 -15.48409 -15.08730 -14.86918 -14.65785 -14.42797 -14.32255 -13.93601 -13.88632 -13.57940 -13.26054 -13.10077 -12.70725 -12.57673 -12.43615 -12.24418 -11.95273 -11.78236 -11.57081 -11.36804 -11.01527 -10.92792 -10.80819 -10.64620 -10.46036 -10.32845 -10.19691 -10.09213 -9.94910 -9.65496 -9.55589 -9.33481 -8.84249 -8.60214 -6.87061 -5.70152 -3.00054 0.34730 0.48628 1.77308 2.54482 2.82649 3.25400 3.46650 3.51193 3.53525 3.95304 4.03821 4.26626 4.38714 4.57013 4.64812 4.70925 4.78516 4.84132 5.06072 5.10474 5.18455 5.20837 5.31419 5.41533 5.58658 5.60572 5.64528 5.67366 5.76821 5.87211 5.91348 5.96564 5.99542 6.13635 6.20168 6.30012 6.41823 6.51768 6.55691 6.79515 6.87729 7.31075 7.34613 7.73803 8.05536 8.47340 9.58381 10.16305 10.50355 11.51993 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003299 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.751145 B = 8484.398318 C = 9756.671501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.600 5.600 7 C 0.551 3.449 8 O -0.497 6.497 9 C -0.067 4.067 10 C -0.134 4.134 11 C 0.098 3.902 12 N -0.460 5.460 13 C 0.113 3.887 14 C -0.054 4.054 15 Cl -0.022 7.022 16 C 0.121 3.879 17 C -0.102 4.102 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.018 0.982 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 1.376 24.436 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.334 5.334 7 C 0.336 3.664 8 O -0.371 6.371 9 C -0.079 4.079 10 C -0.154 4.154 11 C -0.059 4.059 12 N -0.169 5.169 13 C -0.046 4.046 14 C -0.084 4.084 15 Cl 0.007 6.993 16 C 0.000 4.000 17 C -0.121 4.121 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.970 0.795 24.378 24.892 hybrid contribution -0.509 0.277 -1.794 1.885 sum 4.461 1.072 22.584 23.046 Atomic orbital electron populations 1.21878 0.94861 1.02018 1.01750 1.21096 0.96088 0.99337 0.93796 0.91010 1.21989 0.94272 1.01794 0.98617 1.21938 0.95232 0.99166 0.85902 1.48066 1.42331 1.34731 1.08246 1.18042 0.80239 0.80236 0.87908 1.90923 1.59588 1.54885 1.31670 1.20415 0.99178 0.92559 0.95734 1.22431 0.98219 1.01120 0.93629 1.22855 0.95399 0.92030 0.95570 1.67691 1.14469 1.03037 1.31705 1.22839 0.93427 1.00534 0.87750 1.22265 1.01147 0.90690 0.94251 1.98456 1.85131 1.55740 1.59993 1.21820 0.93978 0.99106 0.85127 1.21715 0.94268 1.00906 0.95236 0.90680 1.20716 0.96864 0.94008 0.85300 1.42420 1.65333 1.29244 1.00783 1.19184 1.27995 1.06397 0.83762 0.91268 1.24753 1.00819 0.97504 0.97794 1.69678 1.42249 1.17240 1.28512 0.86219 0.77985 0.77455 0.84681 1.21754 1.21809 1.20829 0.92760 0.93204 0.91557 0.91457 0.90683 0.90101 0.90974 0.83191 0.81386 0.81177 0.91224 0.87551 0.95486 0.96390 0.78104 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.81 37.15 0.33 -1.35 16 2 C -0.08 -0.98 2.22 -90.56 -0.20 -1.18 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.23 5.37 -26.59 -0.14 -1.37 16 5 C 0.10 0.93 5.29 -3.71 -0.02 0.91 16 6 N -0.60 -8.06 2.97 -173.80 -0.52 -8.58 16 7 C 0.55 8.38 6.86 -12.23 -0.08 8.30 16 8 O -0.50 -9.86 15.33 5.34 0.08 -9.78 16 9 C -0.07 -0.80 4.87 -104.62 -0.51 -1.30 16 10 C -0.13 -1.11 7.65 -39.03 -0.30 -1.41 16 11 C 0.10 0.73 11.17 -17.60 -0.20 0.53 16 12 N -0.46 -4.33 10.33 -13.27 -0.14 -4.46 16 13 C 0.11 1.08 10.99 -17.54 -0.19 0.89 16 14 C -0.05 -0.63 6.37 -38.91 -0.25 -0.88 16 15 Cl -0.02 -0.30 27.33 -51.86 -1.42 -1.72 16 16 C 0.12 1.95 5.53 -3.71 -0.02 1.93 16 17 C -0.10 -1.61 1.92 -90.50 -0.17 -1.78 16 18 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.12 5.41 -4.04 -0.02 3.09 16 20 N -0.73 -18.73 5.38 -59.91 -0.32 -19.05 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 25 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.64 5.10 -51.93 -0.26 0.38 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.15 0.92 7.36 -52.48 -0.39 0.54 16 37 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 2.19 6.20 -51.93 -0.32 1.87 16 41 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 10.59 6.89 -40.82 -0.28 10.31 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -34.38 366.74 -9.21 -43.59 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.10 Total: 6.01 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.03 Total: -1.09 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.25 Total: -60.33 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.42 Total: -1.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.38 -9.21 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133139305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.629 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds