Wall clock time and date at job start Tue Mar 31 2020 20:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.45724 * 2 1 4 4 C 1.53077 * 109.44468 * 119.82176 * 2 1 3 5 5 C 1.53187 * 109.29651 * 181.23980 * 4 2 1 6 6 N 1.46930 * 108.89375 * 305.57724 * 5 4 2 7 7 C 1.34777 * 120.63302 * 233.52083 * 6 5 4 8 8 O 1.21527 * 119.99752 * 174.69432 * 7 6 5 9 9 C 1.48071 * 119.99991 * 354.69035 * 7 6 5 10 10 C 1.39868 * 120.93106 * 312.03290 * 9 7 6 11 11 C 1.38083 * 119.02126 * 179.72954 * 10 9 7 12 12 N 1.31851 * 120.93333 * 0.55584 * 11 10 9 13 13 C 1.31750 * 122.07885 * 359.71945 * 12 11 10 14 14 C 1.38363 * 120.86590 * 359.97438 * 13 12 11 15 15 Cl 1.73598 * 120.51759 * 180.02562 * 14 13 12 16 16 C 1.46933 * 118.73717 * 53.53610 * 6 5 4 17 17 C 1.53038 * 109.46100 * 240.02825 * 2 1 3 18 18 H 1.09000 * 109.49865 * 298.58001 * 17 2 1 19 19 C 1.53000 * 109.52303 * 58.65758 * 17 2 1 20 20 N 1.46508 * 109.46902 * 184.85482 * 19 17 2 21 21 C 1.36933 * 119.99866 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99963 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00350 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99484 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00334 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46980 * 90.00424 * 25 23 21 27 27 H 1.48508 * 109.47527 * 210.00141 * 25 23 21 28 28 H 1.48497 * 109.47472 * 330.00406 * 25 23 21 29 29 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47466 * 299.96731 * 1 2 3 31 31 H 1.08995 * 109.47511 * 59.97208 * 1 2 3 32 32 H 1.08997 * 109.38776 * 61.35962 * 4 2 1 33 33 H 1.08998 * 109.61892 * 301.25563 * 4 2 1 34 34 H 1.08993 * 109.58791 * 185.72073 * 5 4 2 35 35 H 1.08995 * 109.59146 * 65.43427 * 5 4 2 36 36 H 1.08009 * 120.48895 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.53225 * 180.24886 * 11 10 9 38 38 H 1.07997 * 119.57174 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.58084 * 66.18130 * 16 6 5 40 40 H 1.08994 * 109.58537 * 186.60873 * 16 6 5 41 41 H 1.08996 * 109.47075 * 304.85197 * 19 17 2 42 42 H 1.08997 * 109.46958 * 64.85961 * 19 17 2 43 43 H 0.96997 * 119.99631 * 0.02562 * 20 19 17 44 44 H 0.97007 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0395 -0.7178 1.2523 5 6 3.5711 -0.6888 1.2645 6 7 4.0677 -1.2492 0.0003 7 6 4.9617 -2.2578 0.0005 8 8 5.2919 -2.7771 -1.0475 9 6 5.5416 -2.7329 1.2773 10 6 6.0535 -1.8297 2.2146 11 6 6.5800 -2.3157 3.3950 12 7 6.6143 -3.6109 3.6393 13 6 6.1486 -4.4971 2.7828 14 6 5.5977 -4.0983 1.5778 15 17 4.9862 -5.2737 0.4561 16 6 3.5713 -0.6889 -1.2640 17 6 2.0398 -0.7209 -1.2500 18 1 1.6976 -1.7557 -1.2382 19 6 1.5029 -0.0196 -2.4994 20 7 1.8952 -0.7766 -3.6908 21 6 1.5254 -0.3370 -4.9338 22 1 0.9448 0.5680 -5.0359 23 6 1.8974 -1.0539 -6.0627 24 7 2.6053 -2.1565 -5.9383 25 14 1.3923 -0.4546 -7.7582 26 1 2.4382 0.4531 -8.2943 27 1 1.2331 -1.6179 -8.6675 28 1 0.1040 0.2775 -7.6611 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6953 -1.7520 1.2419 33 1 1.6590 -0.2162 2.1420 34 1 3.9412 -1.2847 2.0987 35 1 3.9163 0.3398 1.3688 36 1 6.0336 -0.7676 2.0197 37 1 6.9738 -1.6255 4.1263 38 1 6.1967 -5.5486 3.0246 39 1 3.9145 0.3406 -1.3671 40 1 3.9416 -1.2849 -2.0981 41 1 0.4157 0.0359 -2.4459 42 1 1.9159 0.9874 -2.5565 43 1 2.4169 -1.5892 -3.5991 44 1 2.8651 -2.6578 -6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133139305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:51 Heat of formation + Delta-G solvation = -15.201782 kcal Electronic energy + Delta-G solvation = -27280.337552 eV Core-core repulsion = 23450.789211 eV Total energy + Delta-G solvation = -3829.548341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03115 -40.69206 -39.15506 -37.73302 -36.67573 -35.25128 -33.83000 -33.47311 -32.20590 -31.43210 -29.37944 -27.54762 -25.99845 -25.05237 -24.51524 -24.04492 -22.61471 -21.52061 -20.56778 -19.19029 -18.71487 -18.00651 -17.55388 -17.25187 -16.75858 -16.37302 -16.14369 -15.65274 -15.54851 -15.29827 -15.10912 -15.09582 -15.01466 -14.46739 -14.28998 -14.10945 -14.04123 -13.22556 -13.17031 -13.10571 -13.05736 -12.80937 -12.66756 -12.64399 -12.32210 -12.18237 -12.05796 -11.91443 -11.79749 -11.52125 -11.30880 -11.20700 -10.94496 -10.87970 -10.56299 -10.09756 -9.73774 -9.00233 -7.94863 -5.25211 -0.48005 -0.20397 0.90134 1.44196 1.45397 1.47178 1.55545 1.79366 2.51455 2.54715 3.12773 3.35251 3.38122 3.53780 3.64337 3.67338 3.77571 3.82787 4.00817 4.04723 4.18305 4.24441 4.37166 4.44627 4.51656 4.56369 4.57654 4.72068 4.77028 4.77667 4.81288 4.92004 4.95778 5.05572 5.11874 5.22955 5.26289 5.34149 5.40505 5.47856 5.48604 5.57087 6.23539 6.25524 6.66255 6.93830 7.30923 8.08125 8.29721 9.28529 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.003299 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.751145 B = 8484.398318 C = 9756.671501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.094 3.906 6 N -0.595 5.595 7 C 0.545 3.455 8 O -0.561 6.561 9 C -0.084 4.084 10 C -0.120 4.120 11 C 0.114 3.886 12 N -0.469 5.469 13 C 0.118 3.882 14 C -0.072 4.072 15 Cl -0.054 7.054 16 C 0.128 3.872 17 C -0.089 4.089 18 H 0.044 0.956 19 C 0.157 3.843 20 N -0.749 5.749 21 C -0.244 4.244 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.286 1.286 27 H -0.298 1.298 28 H -0.265 1.265 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.180 0.820 37 H 0.213 0.787 38 H 0.188 0.812 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.369 0.631 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 4.345 28.056 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.027 4.027 6 N -0.327 5.327 7 C 0.332 3.668 8 O -0.439 6.439 9 C -0.096 4.096 10 C -0.140 4.140 11 C -0.042 4.042 12 N -0.178 5.178 13 C -0.039 4.039 14 C -0.102 4.102 15 Cl -0.025 7.025 16 C 0.006 3.994 17 C -0.108 4.108 18 H 0.062 0.938 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.213 1.213 27 H -0.225 1.225 28 H -0.190 1.190 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.197 0.803 37 H 0.230 0.770 38 H 0.205 0.795 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.790 3.820 28.074 28.735 hybrid contribution -0.463 -0.553 -2.779 2.871 sum 4.327 3.267 25.295 25.870 Atomic orbital electron populations 1.21859 0.94464 1.01472 1.02520 1.21092 0.96350 0.99890 0.92270 0.89020 1.21992 0.94359 1.00963 0.98785 1.22349 0.95087 1.01135 0.84079 1.48130 1.41548 1.34158 1.08820 1.18637 0.79942 0.79756 0.88474 1.90890 1.61831 1.56917 1.34221 1.20277 1.00910 0.93305 0.95101 1.22749 0.96677 1.01881 0.92701 1.23579 0.93225 0.91830 0.95601 1.67818 1.14504 1.04013 1.31446 1.23066 0.92502 1.01641 0.86738 1.22421 1.02865 0.90211 0.94720 1.98441 1.85747 1.56964 1.61361 1.21475 0.94082 0.98653 0.85211 1.21560 0.93952 0.99337 0.95978 0.93765 1.20922 0.97141 0.93988 0.84863 1.42695 1.65128 1.29249 1.02049 1.19666 1.26734 1.06182 0.84957 0.90201 1.25653 1.01652 0.97963 1.01939 1.69879 1.44383 1.18978 1.29074 0.85104 0.78227 0.76680 0.79539 1.21321 1.22485 1.18969 0.94014 0.90047 0.93114 0.93200 0.86668 0.88113 0.87532 0.80315 0.77023 0.79528 0.89922 0.93019 0.94989 0.95430 0.79921 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.81 71.98 0.63 -2.35 16 2 C -0.08 -1.61 2.22 -10.76 -0.02 -1.64 16 3 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 4 C -0.12 -1.92 5.37 30.68 0.16 -1.76 16 5 C 0.09 1.41 5.29 86.36 0.46 1.87 16 6 N -0.59 -15.76 2.97 -822.05 -2.45 -18.21 16 7 C 0.54 17.12 6.86 86.85 0.60 17.72 16 8 O -0.56 -24.19 15.33 -3.80 -0.06 -24.25 16 9 C -0.08 -1.93 4.87 -19.87 -0.10 -2.03 16 10 C -0.12 -1.56 7.65 22.63 0.17 -1.39 16 11 C 0.11 1.18 11.17 84.65 0.95 2.12 16 12 N -0.47 -7.31 10.33 -195.91 -2.02 -9.33 16 13 C 0.12 2.09 10.99 84.73 0.93 3.02 16 14 C -0.07 -1.70 6.37 22.71 0.14 -1.55 16 15 Cl -0.05 -1.57 27.33 -2.72 -0.07 -1.64 16 16 C 0.13 4.30 5.53 86.36 0.48 4.78 16 17 C -0.09 -2.86 1.92 -10.72 -0.02 -2.88 16 18 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 19 C 0.16 6.26 5.41 86.38 0.47 6.73 16 20 N -0.75 -39.97 5.38 -343.44 -1.85 -41.81 16 21 C -0.24 -14.10 9.99 84.03 0.84 -13.26 16 22 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 23 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 24 N -0.97 -63.55 13.06 21.65 0.28 -63.27 16 25 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.19 6.30 -2.39 -0.02 1.18 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.17 5.10 -2.39 -0.01 1.16 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.18 1.27 7.36 -2.91 -0.02 1.25 16 37 H 0.21 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 2.33 6.20 -2.39 -0.01 2.31 16 41 H 0.03 1.26 6.15 -2.39 -0.01 1.25 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.37 21.83 6.89 -92.71 -0.64 21.19 16 44 H 0.25 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -82.23 366.74 2.41 -79.83 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.39 Total: 23.71 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.16 Total: 5.02 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -6.03 Total: -132.63 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.25 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.64 kcal Total: -82.23 2.41 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133139305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.624 kcal (2) G-P(sol) polarization free energy of solvation -82.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds