Wall clock time and date at job start Tue Mar 31 2020 20:11:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08997 * 109.46218 * 2 1
4 4 C 1.53047 * 109.44768 * 119.96500 * 2 1 3
5 5 C 1.52765 * 109.38137 * 181.25329 * 4 2 1
6 6 N 1.46928 * 109.00737 * 305.58906 * 5 4 2
7 7 C 1.34773 * 120.62991 * 233.57806 * 6 5 4
8 8 O 1.21548 * 120.00493 * 183.08719 * 7 6 5
9 9 C 1.47846 * 119.99746 * 3.09927 * 7 6 5
10 10 C 1.39565 * 120.55628 * 130.87523 * 9 7 6
11 11 N 1.31657 * 120.59642 * 180.25549 * 10 9 7
12 12 C 1.31949 * 121.89284 * 359.74878 * 11 10 9
13 13 C 1.38426 * 121.06454 * 359.97343 * 12 11 10
14 14 Cl 1.73591 * 120.36140 * 180.02562 * 13 12 11
15 15 C 1.38508 * 119.27263 * 0.02562 * 13 12 11
16 16 C 1.46921 * 118.73764 * 53.31429 * 6 5 4
17 17 C 1.53040 * 109.46058 * 240.02666 * 2 1 3
18 18 H 1.08996 * 109.49846 * 298.57929 * 17 2 1
19 19 C 1.52996 * 109.49623 * 58.67888 * 17 2 1
20 20 N 1.46506 * 109.47119 * 184.83782 * 19 17 2
21 21 C 1.36934 * 120.00042 * 179.97438 * 20 19 17
22 22 H 1.07997 * 120.00226 * 0.02562 * 21 20 19
23 23 C 1.38813 * 119.99825 * 179.97438 * 21 20 19
24 24 N 1.31620 * 120.00132 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 119.99947 * 180.02562 * 23 21 20
26 26 H 1.48506 * 109.47115 * 359.97438 * 25 23 21
27 27 H 1.48501 * 109.47285 * 119.99985 * 25 23 21
28 28 H 1.48498 * 109.47277 * 240.00153 * 25 23 21
29 29 H 1.09008 * 109.46990 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47462 * 299.97048 * 1 2 3
31 31 H 1.08994 * 109.47034 * 59.97257 * 1 2 3
32 32 H 1.08999 * 109.49943 * 301.32855 * 4 2 1
33 33 H 1.09001 * 109.49462 * 61.39795 * 4 2 1
34 34 H 1.09000 * 109.51034 * 185.70745 * 5 4 2
35 35 H 1.08998 * 109.42719 * 65.42703 * 5 4 2
36 36 H 1.08005 * 119.70143 * 359.97438 * 10 9 7
37 37 H 1.08007 * 119.46369 * 179.97438 * 12 11 10
38 38 H 1.08009 * 120.86010 * 179.97438 * 15 13 12
39 39 H 1.08996 * 109.59179 * 66.42615 * 16 6 5
40 40 H 1.09004 * 109.58269 * 186.71055 * 16 6 5
41 41 H 1.09001 * 109.47111 * 304.83537 * 19 17 2
42 42 H 1.08997 * 109.47635 * 64.83788 * 19 17 2
43 43 H 0.97001 * 119.99499 * 359.97438 * 20 19 17
44 44 H 0.96999 * 119.99997 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0395 -0.7208 1.2502
5 6 3.5669 -0.6927 1.2646
6 7 4.0676 -1.2493 0.0004
7 6 4.9610 -2.2584 0.0005
8 8 5.4101 -2.6727 -1.0502
9 6 5.3946 -2.8616 1.2788
10 6 5.3924 -4.2471 1.4464
11 7 5.7736 -4.7849 2.5861
12 6 6.1740 -4.0483 3.6050
13 6 6.2108 -2.6673 3.5173
14 17 6.7414 -1.7161 4.8689
15 6 5.8196 -2.0529 2.3392
16 6 3.5714 -0.6890 -1.2639
17 6 2.0398 -0.7209 -1.2500
18 1 1.6976 -1.7557 -1.2382
19 6 1.5031 -0.0189 -2.4989
20 7 1.8953 -0.7752 -3.6908
21 6 1.5246 -0.3354 -4.9335
22 1 0.9435 0.5692 -5.0350
23 6 1.8967 -1.0518 -6.0628
24 7 2.6054 -2.1540 -5.9391
25 14 1.3917 -0.4515 -7.7581
26 1 0.6054 0.8014 -7.6256
27 1 2.6055 -0.1908 -8.5729
28 1 0.5621 -1.4879 -8.4234
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5133 0.8902
31 1 -0.3633 0.5142 -0.8897
32 1 1.6569 -0.2207 2.1399
33 1 1.6968 -1.7555 1.2387
34 1 3.9342 -1.2911 2.0982
35 1 3.9095 0.3365 1.3719
36 1 5.0707 -4.8837 0.6354
37 1 6.4779 -4.5308 4.5223
38 1 5.8378 -0.9773 2.2428
39 1 3.9145 0.3404 -1.3670
40 1 3.9438 -1.2836 -2.0982
41 1 0.4158 0.0367 -2.4455
42 1 1.9160 0.9882 -2.5556
43 1 2.4176 -1.5875 -3.5996
44 1 2.8657 -2.6543 -6.7282
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001133165959.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:11:59
Heat of formation + Delta-G solvation = 5.749220 kcal
Electronic energy + Delta-G solvation = -26996.575128 eV
Core-core repulsion = 23167.935291 eV
Total energy + Delta-G solvation = -3828.639838 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.19633 -39.76345 -37.98962 -37.11078 -35.16954 -33.88475 -33.01874 -31.91668
-31.56780 -29.84887 -28.32445 -25.95885 -25.00005 -24.04123 -23.22758 -23.06988
-21.29330 -20.37209 -19.45649 -17.77667 -17.52547 -17.08765 -16.99260 -16.22491
-15.52038 -15.10626 -14.88866 -14.70676 -14.38881 -14.21716 -13.98645 -13.80081
-13.56097 -13.23945 -13.06031 -12.97628 -12.67950 -12.55896 -12.46324 -11.96419
-11.80412 -11.72960 -11.59022 -11.03664 -10.94345 -10.83973 -10.67536 -10.49602
-10.35711 -10.22830 -10.14114 -9.95993 -9.69641 -9.58622 -9.42764 -8.86205
-8.63729 -6.88564 -5.71925 -3.01646 0.24873 0.51009 1.47294 2.50344
2.80960 3.22967 3.45738 3.50743 3.53528 3.89683 4.11041 4.14346
4.28469 4.55063 4.63214 4.68001 4.75611 4.83788 4.86489 5.06962
5.18241 5.27192 5.28729 5.42744 5.56535 5.59367 5.62844 5.65414
5.74852 5.85388 5.88599 5.92305 5.98396 6.11386 6.18656 6.28235
6.40043 6.49524 6.53214 6.77746 6.85740 7.25394 7.34361 7.73240
8.03009 8.45765 9.56944 10.14469 10.48478 11.50408
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.017083 B = 0.002743 C = 0.002489
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.637688 B =10206.072228 C =11244.979239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.085 4.085
3 H 0.072 0.928
4 C -0.129 4.129
5 C 0.096 3.904
6 N -0.600 5.600
7 C 0.558 3.442
8 O -0.512 6.512
9 C -0.157 4.157
10 C 0.155 3.845
11 N -0.466 5.466
12 C 0.129 3.871
13 C -0.097 4.097
14 Cl -0.048 7.048
15 C -0.039 4.039
16 C 0.120 3.880
17 C -0.102 4.102
18 H 0.075 0.925
19 C 0.159 3.841
20 N -0.733 5.733
21 C -0.241 4.241
22 H 0.070 0.930
23 C -0.013 4.013
24 N -0.929 5.929
25 Si 0.905 3.095
26 H -0.281 1.281
27 H -0.292 1.292
28 H -0.292 1.292
29 H 0.053 0.947
30 H 0.049 0.951
31 H 0.066 0.934
32 H 0.075 0.925
33 H 0.067 0.933
34 H 0.083 0.917
35 H 0.073 0.927
36 H 0.174 0.826
37 H 0.170 0.830
38 H 0.153 0.847
39 H 0.069 0.931
40 H 0.106 0.894
41 H 0.028 0.972
42 H 0.019 0.981
43 H 0.384 0.616
44 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.414 1.758 25.797 26.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.104 4.104
3 H 0.090 0.910
4 C -0.167 4.167
5 C -0.026 4.026
6 N -0.333 5.333
7 C 0.344 3.656
8 O -0.387 6.387
9 C -0.162 4.162
10 C -0.003 4.003
11 N -0.174 5.174
12 C -0.029 4.029
13 C -0.126 4.126
14 Cl -0.020 7.020
15 C -0.066 4.066
16 C -0.001 4.001
17 C -0.121 4.121
18 H 0.093 0.907
19 C 0.031 3.969
20 N -0.378 5.378
21 C -0.372 4.372
22 H 0.088 0.912
23 C -0.209 4.209
24 N -0.577 5.577
25 Si 0.737 3.263
26 H -0.206 1.206
27 H -0.219 1.219
28 H -0.219 1.219
29 H 0.073 0.927
30 H 0.068 0.932
31 H 0.085 0.915
32 H 0.093 0.907
33 H 0.086 0.914
34 H 0.101 0.899
35 H 0.091 0.909
36 H 0.191 0.809
37 H 0.187 0.813
38 H 0.170 0.830
39 H 0.088 0.912
40 H 0.125 0.875
41 H 0.046 0.954
42 H 0.036 0.964
43 H 0.219 0.781
44 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 4.619 0.816 25.282 25.713
hybrid contribution -0.038 1.108 -0.833 1.386
sum 4.581 1.923 24.449 24.948
Atomic orbital electron populations
1.21878 0.94829 1.02022 1.01776 1.21099 0.96114 0.99364 0.93783
0.90979 1.21914 0.94296 1.01792 0.98693 1.21963 0.95368 0.99255
0.86058 1.48110 1.42313 1.34655 1.08215 1.17976 0.79853 0.79879
0.87923 1.90910 1.54778 1.61157 1.31873 1.21092 1.04054 0.95747
0.95319 1.23118 0.91170 0.91316 0.94672 1.67955 1.10600 1.38916
0.99930 1.23029 0.93355 0.88480 0.98040 1.21971 1.05591 0.93667
0.91325 1.98400 1.88629 1.71662 1.43283 1.21747 0.93483 1.01349
0.90047 1.21826 0.93852 0.99355 0.85086 1.21725 0.94229 1.00894
0.95291 0.90666 1.20719 0.96886 0.94041 0.85262 1.42422 1.65269
1.29291 1.00812 1.19229 1.27846 1.06421 0.83738 0.91202 1.24756
1.00809 0.97532 0.97819 1.69679 1.42261 1.17366 1.28417 0.86146
0.77632 0.77712 0.84852 1.20615 1.21879 1.21911 0.92743 0.93197
0.91547 0.90687 0.91415 0.89908 0.90902 0.80851 0.81336 0.82959
0.91230 0.87535 0.95444 0.96358 0.78147 0.93521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.64 8.81 37.16 0.33 -1.31 16
2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16
3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
4 C -0.13 -1.20 5.34 -26.83 -0.14 -1.34 16
5 C 0.10 0.89 5.34 -3.93 -0.02 0.87 16
6 N -0.60 -7.85 2.98 -174.14 -0.52 -8.36 16
7 C 0.56 8.13 7.28 -12.33 -0.09 8.04 16
8 O -0.51 -9.85 16.46 5.32 0.09 -9.76 16
9 C -0.16 -1.76 5.04 -104.82 -0.53 -2.29 16
10 C 0.15 1.72 10.90 -17.13 -0.19 1.54 16
11 N -0.47 -4.88 10.34 -12.88 -0.13 -5.01 16
12 C 0.13 1.06 10.97 -17.43 -0.19 0.87 16
13 C -0.10 -0.77 6.34 -39.41 -0.25 -1.02 16
14 Cl -0.05 -0.33 28.98 -51.86 -1.50 -1.84 16
15 C -0.04 -0.35 7.29 -38.84 -0.28 -0.63 16
16 C 0.12 1.91 5.51 -3.71 -0.02 1.88 16
17 C -0.10 -1.57 1.92 -90.50 -0.17 -1.74 16
18 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
19 C 0.16 3.06 5.41 -4.04 -0.02 3.04 16
20 N -0.73 -18.48 5.38 -59.91 -0.32 -18.80 16
21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16
22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16
24 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16
25 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16
26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
29 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16
30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
31 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16
32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
34 H 0.08 0.65 4.53 -51.93 -0.24 0.42 16
35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16
37 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16
38 H 0.15 1.11 7.05 -52.48 -0.37 0.74 16
39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
40 H 0.11 2.14 6.23 -51.93 -0.32 1.82 16
41 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16
42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
43 H 0.38 10.39 6.89 -40.82 -0.28 10.10 16
44 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 368.62 15.07 5.56 5.56
Total: -1.00 -33.14 368.62 -9.22 -42.36
By element:
Atomic # 1 Polarization: 12.89 SS G_CDS: -6.05 Total: 6.84 kcal
Atomic # 6 Polarization: 1.37 SS G_CDS: -2.03 Total: -0.66 kcal
Atomic # 7 Polarization: -59.87 SS G_CDS: -0.25 Total: -60.12 kcal
Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal
Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal
Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.14 -9.22 -42.36 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133165959.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal
(2) G-P(sol) polarization free energy of solvation -33.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds