Wall clock time and date at job start Tue Mar 31 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46218 * 2 1 4 4 C 1.53047 * 109.44768 * 119.96500 * 2 1 3 5 5 C 1.52765 * 109.38137 * 181.25329 * 4 2 1 6 6 N 1.46928 * 109.00737 * 305.58906 * 5 4 2 7 7 C 1.34773 * 120.62991 * 233.57806 * 6 5 4 8 8 O 1.21548 * 120.00493 * 183.08719 * 7 6 5 9 9 C 1.47846 * 119.99746 * 3.09927 * 7 6 5 10 10 C 1.39565 * 120.55628 * 130.87523 * 9 7 6 11 11 N 1.31657 * 120.59642 * 180.25549 * 10 9 7 12 12 C 1.31949 * 121.89284 * 359.74878 * 11 10 9 13 13 C 1.38426 * 121.06454 * 359.97343 * 12 11 10 14 14 Cl 1.73591 * 120.36140 * 180.02562 * 13 12 11 15 15 C 1.38508 * 119.27263 * 0.02562 * 13 12 11 16 16 C 1.46921 * 118.73764 * 53.31429 * 6 5 4 17 17 C 1.53040 * 109.46058 * 240.02666 * 2 1 3 18 18 H 1.08996 * 109.49846 * 298.57929 * 17 2 1 19 19 C 1.52996 * 109.49623 * 58.67888 * 17 2 1 20 20 N 1.46506 * 109.47119 * 184.83782 * 19 17 2 21 21 C 1.36934 * 120.00042 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00226 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99825 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47285 * 119.99985 * 25 23 21 28 28 H 1.48498 * 109.47277 * 240.00153 * 25 23 21 29 29 H 1.09008 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47462 * 299.97048 * 1 2 3 31 31 H 1.08994 * 109.47034 * 59.97257 * 1 2 3 32 32 H 1.08999 * 109.49943 * 301.32855 * 4 2 1 33 33 H 1.09001 * 109.49462 * 61.39795 * 4 2 1 34 34 H 1.09000 * 109.51034 * 185.70745 * 5 4 2 35 35 H 1.08998 * 109.42719 * 65.42703 * 5 4 2 36 36 H 1.08005 * 119.70143 * 359.97438 * 10 9 7 37 37 H 1.08007 * 119.46369 * 179.97438 * 12 11 10 38 38 H 1.08009 * 120.86010 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.59179 * 66.42615 * 16 6 5 40 40 H 1.09004 * 109.58269 * 186.71055 * 16 6 5 41 41 H 1.09001 * 109.47111 * 304.83537 * 19 17 2 42 42 H 1.08997 * 109.47635 * 64.83788 * 19 17 2 43 43 H 0.97001 * 119.99499 * 359.97438 * 20 19 17 44 44 H 0.96999 * 119.99997 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5669 -0.6927 1.2646 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2584 0.0005 8 8 5.4101 -2.6727 -1.0502 9 6 5.3946 -2.8616 1.2788 10 6 5.3924 -4.2471 1.4464 11 7 5.7736 -4.7849 2.5861 12 6 6.1740 -4.0483 3.6050 13 6 6.2108 -2.6673 3.5173 14 17 6.7414 -1.7161 4.8689 15 6 5.8196 -2.0529 2.3392 16 6 3.5714 -0.6890 -1.2639 17 6 2.0398 -0.7209 -1.2500 18 1 1.6976 -1.7557 -1.2382 19 6 1.5031 -0.0189 -2.4989 20 7 1.8953 -0.7752 -3.6908 21 6 1.5246 -0.3354 -4.9335 22 1 0.9435 0.5692 -5.0350 23 6 1.8967 -1.0518 -6.0628 24 7 2.6054 -2.1540 -5.9391 25 14 1.3917 -0.4515 -7.7581 26 1 0.6054 0.8014 -7.6256 27 1 2.6055 -0.1908 -8.5729 28 1 0.5621 -1.4879 -8.4234 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 1.6569 -0.2207 2.1399 33 1 1.6968 -1.7555 1.2387 34 1 3.9342 -1.2911 2.0982 35 1 3.9095 0.3365 1.3719 36 1 5.0707 -4.8837 0.6354 37 1 6.4779 -4.5308 4.5223 38 1 5.8378 -0.9773 2.2428 39 1 3.9145 0.3404 -1.3670 40 1 3.9438 -1.2836 -2.0982 41 1 0.4158 0.0367 -2.4455 42 1 1.9160 0.9882 -2.5556 43 1 2.4176 -1.5875 -3.5996 44 1 2.8657 -2.6543 -6.7282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133165959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:59 Heat of formation + Delta-G solvation = 5.749220 kcal Electronic energy + Delta-G solvation = -26996.575128 eV Core-core repulsion = 23167.935291 eV Total energy + Delta-G solvation = -3828.639838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19633 -39.76345 -37.98962 -37.11078 -35.16954 -33.88475 -33.01874 -31.91668 -31.56780 -29.84887 -28.32445 -25.95885 -25.00005 -24.04123 -23.22758 -23.06988 -21.29330 -20.37209 -19.45649 -17.77667 -17.52547 -17.08765 -16.99260 -16.22491 -15.52038 -15.10626 -14.88866 -14.70676 -14.38881 -14.21716 -13.98645 -13.80081 -13.56097 -13.23945 -13.06031 -12.97628 -12.67950 -12.55896 -12.46324 -11.96419 -11.80412 -11.72960 -11.59022 -11.03664 -10.94345 -10.83973 -10.67536 -10.49602 -10.35711 -10.22830 -10.14114 -9.95993 -9.69641 -9.58622 -9.42764 -8.86205 -8.63729 -6.88564 -5.71925 -3.01646 0.24873 0.51009 1.47294 2.50344 2.80960 3.22967 3.45738 3.50743 3.53528 3.89683 4.11041 4.14346 4.28469 4.55063 4.63214 4.68001 4.75611 4.83788 4.86489 5.06962 5.18241 5.27192 5.28729 5.42744 5.56535 5.59367 5.62844 5.65414 5.74852 5.85388 5.88599 5.92305 5.98396 6.11386 6.18656 6.28235 6.40043 6.49524 6.53214 6.77746 6.85740 7.25394 7.34361 7.73240 8.03009 8.45765 9.56944 10.14469 10.48478 11.50408 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002743 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.637688 B =10206.072228 C =11244.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.096 3.904 6 N -0.600 5.600 7 C 0.558 3.442 8 O -0.512 6.512 9 C -0.157 4.157 10 C 0.155 3.845 11 N -0.466 5.466 12 C 0.129 3.871 13 C -0.097 4.097 14 Cl -0.048 7.048 15 C -0.039 4.039 16 C 0.120 3.880 17 C -0.102 4.102 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.028 0.972 42 H 0.019 0.981 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 1.758 25.797 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.333 5.333 7 C 0.344 3.656 8 O -0.387 6.387 9 C -0.162 4.162 10 C -0.003 4.003 11 N -0.174 5.174 12 C -0.029 4.029 13 C -0.126 4.126 14 Cl -0.020 7.020 15 C -0.066 4.066 16 C -0.001 4.001 17 C -0.121 4.121 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.191 0.809 37 H 0.187 0.813 38 H 0.170 0.830 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.619 0.816 25.282 25.713 hybrid contribution -0.038 1.108 -0.833 1.386 sum 4.581 1.923 24.449 24.948 Atomic orbital electron populations 1.21878 0.94829 1.02022 1.01776 1.21099 0.96114 0.99364 0.93783 0.90979 1.21914 0.94296 1.01792 0.98693 1.21963 0.95368 0.99255 0.86058 1.48110 1.42313 1.34655 1.08215 1.17976 0.79853 0.79879 0.87923 1.90910 1.54778 1.61157 1.31873 1.21092 1.04054 0.95747 0.95319 1.23118 0.91170 0.91316 0.94672 1.67955 1.10600 1.38916 0.99930 1.23029 0.93355 0.88480 0.98040 1.21971 1.05591 0.93667 0.91325 1.98400 1.88629 1.71662 1.43283 1.21747 0.93483 1.01349 0.90047 1.21826 0.93852 0.99355 0.85086 1.21725 0.94229 1.00894 0.95291 0.90666 1.20719 0.96886 0.94041 0.85262 1.42422 1.65269 1.29291 1.00812 1.19229 1.27846 1.06421 0.83738 0.91202 1.24756 1.00809 0.97532 0.97819 1.69679 1.42261 1.17366 1.28417 0.86146 0.77632 0.77712 0.84852 1.20615 1.21879 1.21911 0.92743 0.93197 0.91547 0.90687 0.91415 0.89908 0.90902 0.80851 0.81336 0.82959 0.91230 0.87535 0.95444 0.96358 0.78147 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.81 37.16 0.33 -1.31 16 2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.20 5.34 -26.83 -0.14 -1.34 16 5 C 0.10 0.89 5.34 -3.93 -0.02 0.87 16 6 N -0.60 -7.85 2.98 -174.14 -0.52 -8.36 16 7 C 0.56 8.13 7.28 -12.33 -0.09 8.04 16 8 O -0.51 -9.85 16.46 5.32 0.09 -9.76 16 9 C -0.16 -1.76 5.04 -104.82 -0.53 -2.29 16 10 C 0.15 1.72 10.90 -17.13 -0.19 1.54 16 11 N -0.47 -4.88 10.34 -12.88 -0.13 -5.01 16 12 C 0.13 1.06 10.97 -17.43 -0.19 0.87 16 13 C -0.10 -0.77 6.34 -39.41 -0.25 -1.02 16 14 Cl -0.05 -0.33 28.98 -51.86 -1.50 -1.84 16 15 C -0.04 -0.35 7.29 -38.84 -0.28 -0.63 16 16 C 0.12 1.91 5.51 -3.71 -0.02 1.88 16 17 C -0.10 -1.57 1.92 -90.50 -0.17 -1.74 16 18 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.06 5.41 -4.04 -0.02 3.04 16 20 N -0.73 -18.48 5.38 -59.91 -0.32 -18.80 16 21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.65 4.53 -51.93 -0.24 0.42 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.15 1.11 7.05 -52.48 -0.37 0.74 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 2.14 6.23 -51.93 -0.32 1.82 16 41 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.39 6.89 -40.82 -0.28 10.10 16 44 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.14 368.62 -9.22 -42.36 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.05 Total: 6.84 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.03 Total: -0.66 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.25 Total: -60.12 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.14 -9.22 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds