Wall clock time and date at job start Tue Mar 31 2020 20:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46218 * 2 1 4 4 C 1.53047 * 109.44768 * 119.96500 * 2 1 3 5 5 C 1.52765 * 109.38137 * 181.25329 * 4 2 1 6 6 N 1.46928 * 109.00737 * 305.58906 * 5 4 2 7 7 C 1.34773 * 120.62991 * 233.57806 * 6 5 4 8 8 O 1.21548 * 120.00493 * 183.08719 * 7 6 5 9 9 C 1.47846 * 119.99746 * 3.09927 * 7 6 5 10 10 C 1.39565 * 120.55628 * 130.87523 * 9 7 6 11 11 N 1.31657 * 120.59642 * 180.25549 * 10 9 7 12 12 C 1.31949 * 121.89284 * 359.74878 * 11 10 9 13 13 C 1.38426 * 121.06454 * 359.97343 * 12 11 10 14 14 Cl 1.73591 * 120.36140 * 180.02562 * 13 12 11 15 15 C 1.38508 * 119.27263 * 0.02562 * 13 12 11 16 16 C 1.46921 * 118.73764 * 53.31429 * 6 5 4 17 17 C 1.53040 * 109.46058 * 240.02666 * 2 1 3 18 18 H 1.08996 * 109.49846 * 298.57929 * 17 2 1 19 19 C 1.52996 * 109.49623 * 58.67888 * 17 2 1 20 20 N 1.46506 * 109.47119 * 184.83782 * 19 17 2 21 21 C 1.36934 * 120.00042 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00226 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99825 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47115 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47285 * 119.99985 * 25 23 21 28 28 H 1.48498 * 109.47277 * 240.00153 * 25 23 21 29 29 H 1.09008 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47462 * 299.97048 * 1 2 3 31 31 H 1.08994 * 109.47034 * 59.97257 * 1 2 3 32 32 H 1.08999 * 109.49943 * 301.32855 * 4 2 1 33 33 H 1.09001 * 109.49462 * 61.39795 * 4 2 1 34 34 H 1.09000 * 109.51034 * 185.70745 * 5 4 2 35 35 H 1.08998 * 109.42719 * 65.42703 * 5 4 2 36 36 H 1.08005 * 119.70143 * 359.97438 * 10 9 7 37 37 H 1.08007 * 119.46369 * 179.97438 * 12 11 10 38 38 H 1.08009 * 120.86010 * 179.97438 * 15 13 12 39 39 H 1.08996 * 109.59179 * 66.42615 * 16 6 5 40 40 H 1.09004 * 109.58269 * 186.71055 * 16 6 5 41 41 H 1.09001 * 109.47111 * 304.83537 * 19 17 2 42 42 H 1.08997 * 109.47635 * 64.83788 * 19 17 2 43 43 H 0.97001 * 119.99499 * 359.97438 * 20 19 17 44 44 H 0.96999 * 119.99997 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 3.5669 -0.6927 1.2646 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2584 0.0005 8 8 5.4101 -2.6727 -1.0502 9 6 5.3946 -2.8616 1.2788 10 6 5.3924 -4.2471 1.4464 11 7 5.7736 -4.7849 2.5861 12 6 6.1740 -4.0483 3.6050 13 6 6.2108 -2.6673 3.5173 14 17 6.7414 -1.7161 4.8689 15 6 5.8196 -2.0529 2.3392 16 6 3.5714 -0.6890 -1.2639 17 6 2.0398 -0.7209 -1.2500 18 1 1.6976 -1.7557 -1.2382 19 6 1.5031 -0.0189 -2.4989 20 7 1.8953 -0.7752 -3.6908 21 6 1.5246 -0.3354 -4.9335 22 1 0.9435 0.5692 -5.0350 23 6 1.8967 -1.0518 -6.0628 24 7 2.6054 -2.1540 -5.9391 25 14 1.3917 -0.4515 -7.7581 26 1 0.6054 0.8014 -7.6256 27 1 2.6055 -0.1908 -8.5729 28 1 0.5621 -1.4879 -8.4234 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 1.6569 -0.2207 2.1399 33 1 1.6968 -1.7555 1.2387 34 1 3.9342 -1.2911 2.0982 35 1 3.9095 0.3365 1.3719 36 1 5.0707 -4.8837 0.6354 37 1 6.4779 -4.5308 4.5223 38 1 5.8378 -0.9773 2.2428 39 1 3.9145 0.3404 -1.3670 40 1 3.9438 -1.2836 -2.0982 41 1 0.4158 0.0367 -2.4455 42 1 1.9160 0.9882 -2.5556 43 1 2.4176 -1.5875 -3.5996 44 1 2.8657 -2.6543 -6.7282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133165959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:58 Heat of formation + Delta-G solvation = -15.824635 kcal Electronic energy + Delta-G solvation = -26997.510641 eV Core-core repulsion = 23167.935291 eV Total energy + Delta-G solvation = -3829.575350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11784 -40.72746 -39.17254 -37.72885 -36.70699 -35.28843 -33.88363 -33.48658 -32.39568 -31.42269 -29.35853 -27.49612 -25.95951 -25.16881 -24.62240 -24.02873 -22.61358 -21.50902 -20.52196 -19.17699 -18.60852 -18.27635 -17.92638 -17.31263 -16.75175 -16.35713 -16.16977 -15.66383 -15.56651 -15.34884 -15.27663 -15.10314 -14.62279 -14.41014 -14.31031 -14.09059 -14.00645 -13.65240 -13.14795 -13.11574 -13.05799 -12.82018 -12.67085 -12.64277 -12.32450 -12.15780 -12.03164 -11.91182 -11.81434 -11.54297 -11.33899 -11.21455 -10.95368 -10.91209 -10.60827 -10.16704 -9.76021 -8.99217 -7.94407 -5.24316 -0.52956 -0.22104 0.82619 1.42059 1.45415 1.47058 1.57067 1.78753 2.41816 2.55356 3.09216 3.30697 3.38881 3.49300 3.52173 3.64944 3.76219 3.82419 3.94194 4.00620 4.08414 4.21144 4.24845 4.37502 4.50676 4.57702 4.60721 4.67929 4.73118 4.77442 4.80934 4.91431 4.96195 5.06003 5.12105 5.15899 5.23478 5.26609 5.38771 5.48655 5.49132 5.57439 6.21707 6.26593 6.56172 6.91930 7.32121 8.09074 8.30516 9.29223 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002743 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.637688 B =10206.072228 C =11244.979239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.088 0.912 4 C -0.123 4.123 5 C 0.091 3.909 6 N -0.595 5.595 7 C 0.555 3.445 8 O -0.575 6.575 9 C -0.167 4.167 10 C 0.145 3.855 11 N -0.481 5.481 12 C 0.136 3.864 13 C -0.090 4.090 14 Cl -0.029 7.029 15 C -0.029 4.029 16 C 0.127 3.873 17 C -0.088 4.088 18 H 0.050 0.950 19 C 0.157 3.843 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.294 1.294 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.025 0.975 43 H 0.370 0.630 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 3.938 29.292 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.030 4.030 6 N -0.326 5.326 7 C 0.343 3.657 8 O -0.455 6.455 9 C -0.172 4.172 10 C -0.012 4.012 11 N -0.189 5.189 12 C -0.022 4.022 13 C -0.119 4.119 14 Cl 0.000 7.000 15 C -0.056 4.056 16 C 0.004 3.996 17 C -0.108 4.108 18 H 0.069 0.931 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.221 1.221 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.180 0.820 37 H 0.216 0.784 38 H 0.190 0.810 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.202 0.798 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.078 3.057 28.848 29.295 hybrid contribution 0.124 0.475 -1.755 1.823 sum 4.201 3.532 27.093 27.643 Atomic orbital electron populations 1.21855 0.94317 1.01646 1.02464 1.21092 0.96458 0.99776 0.92360 0.89365 1.21909 0.94069 1.01298 0.98780 1.22339 0.95483 1.00866 0.84323 1.48159 1.41558 1.34113 1.08729 1.18505 0.79310 0.79512 0.88388 1.90875 1.57153 1.63037 1.34389 1.20712 1.06167 0.95846 0.94508 1.23010 0.91813 0.91359 0.95050 1.67990 1.11352 1.39467 1.00106 1.23544 0.91647 0.88839 0.98188 1.21949 1.04704 0.93730 0.91472 1.98417 1.88313 1.71148 1.42121 1.21878 0.92324 1.02035 0.89341 1.21488 0.94131 0.98744 0.85194 1.21569 0.93708 0.99664 0.95873 0.93106 1.20921 0.97209 0.93936 0.84872 1.42691 1.65063 1.29324 1.02019 1.19686 1.26548 1.06154 0.84961 0.90271 1.25637 1.01679 0.98037 1.01862 1.69867 1.44339 1.19042 1.29003 0.85052 0.77050 0.77690 0.79845 1.18598 1.22244 1.22140 0.93690 0.90197 0.93125 0.86883 0.92553 0.88021 0.88112 0.81998 0.78435 0.81000 0.90366 0.92734 0.94841 0.95661 0.79825 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.81 71.98 0.63 -2.26 16 2 C -0.08 -1.60 2.23 -10.77 -0.02 -1.63 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -1.87 5.34 30.53 0.16 -1.71 16 5 C 0.09 1.40 5.34 86.22 0.46 1.86 16 6 N -0.59 -15.56 2.98 -823.15 -2.45 -18.01 16 7 C 0.56 16.94 7.28 86.79 0.63 17.57 16 8 O -0.57 -24.19 16.46 -3.87 -0.06 -24.26 16 9 C -0.17 -3.73 5.04 -20.00 -0.10 -3.83 16 10 C 0.14 3.31 10.90 85.04 0.93 4.24 16 11 N -0.48 -9.64 10.34 -194.66 -2.01 -11.65 16 12 C 0.14 1.90 10.97 84.72 0.93 2.83 16 13 C -0.09 -1.16 6.34 22.38 0.14 -1.02 16 14 Cl -0.03 -0.29 28.98 -2.72 -0.08 -0.37 16 15 C -0.03 -0.45 7.29 22.75 0.17 -0.28 16 16 C 0.13 4.20 5.51 86.36 0.48 4.68 16 17 C -0.09 -2.77 1.92 -10.72 -0.02 -2.79 16 18 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 19 C 0.16 6.15 5.41 86.38 0.47 6.62 16 20 N -0.75 -39.30 5.38 -343.45 -1.85 -41.14 16 21 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 22 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 24 N -0.97 -62.66 13.06 21.65 0.28 -62.38 16 25 Si 0.97 47.57 29.55 68.60 2.03 49.60 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 29 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.16 6.30 -2.39 -0.02 1.15 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.24 4.53 -2.39 -0.01 1.23 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.17 1.91 7.05 -2.91 -0.02 1.89 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 2.41 6.23 -2.39 -0.01 2.39 16 41 H 0.03 1.30 6.15 -2.39 -0.01 1.28 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.37 21.38 6.89 -92.71 -0.64 20.74 16 44 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -77.12 368.62 2.40 -74.72 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.39 Total: 26.53 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.16 Total: 6.96 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -6.03 Total: -133.18 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -77.12 2.40 -74.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.893 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds